Development of novel methods for sequence comparison in the era of massive DNA sequencing data
Project/Area Number |
22310124
|
Research Category |
Grant-in-Aid for Scientific Research (B)
|
Allocation Type | Single-year Grants |
Section | 一般 |
Research Field |
System genome science
|
Research Institution | National Institute of Advanced Industrial Science and Technology (2012) Kyoto University (2010-2011) |
Principal Investigator |
GOTOH Osamu 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 招聘研究員 (40142111)
|
Co-Investigator(Kenkyū-buntansha) |
ICHINOSE Natsuhiro 京都大学, 情報研究科, 助教 (70302750)
|
Project Period (FY) |
2010 – 2012
|
Project Status |
Completed (Fiscal Year 2012)
|
Budget Amount *help |
¥18,330,000 (Direct Cost: ¥14,100,000、Indirect Cost: ¥4,230,000)
Fiscal Year 2012: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2011: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2010: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
|
Keywords | 次世代シークエンサー / アラインメント / ゲノム / RNA-Seq / 比較ゲノム / スプライシング / アルゴリズム / アセスメント / 配列比較 / アライメント / 遺伝子発見 / 選択的スプライシング / 生物進化 |
Research Abstract |
We focused on middle-to-long DNA reads generated by new generation sequencers, and developed a computer program named “Spaln” that maps and spliced-align a set of transcripts onto reference genomic sequences. When tested on full length cDNA or protein ami
|
Report
(4 results)
Research Products
(39 results)
-
-
-
-
[Journal Article] Identification of a new clock-related element EL-box involved in circadian regulation by BMAL1/CLOCK and HES12012
Author(s)
Ueshima, T., Kawamoto, T., Honda, K.K, Noshiro, M., Fujimoto, K., Nakao, S., Ichinose, N., Hashimoto, S., Gotoh, O., Kato, Y
-
Journal Title
Gene
Volume: 510 (2)
Issue: 2
Pages: 118-125
DOI
Related Report
Peer Reviewed
-
-
-
-
-
-
[Presentation] Detection of splice junctions from mid-to-long RNA-seq reads by Spaln2012
Author(s)
Zeng, C., Iwata, H., Ichinose, N., Yata, T., Gotoh, O
Organizer
GIW 2012
Place of Presentation
National Cheng Kung University, Tainan, Taiwan
Related Report
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-