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TAKENAKA Yoichi  竹中 要一

… Alternative Names

竹中 要一  タケナカ ヨウイチ

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Researcher Number 00324830
Other IDs
  • ORCIDhttps://orcid.org/0000-0003-3286-2265
Affiliation (Current) 2025: 関西大学, 総合情報学部, 教授
Affiliation (based on the past Project Information) *help 2017 – 2022: 関西大学, 総合情報学部, 教授
2010 – 2016: 大阪大学, 情報科学研究科, 准教授
2013: 大阪大学, 大学院情報科学研究科, 准教授
2007 – 2012: 大阪大学, 大学院・情報科学研究科, 准教授
2007 – 2008: Osaka University, 情報科学研究科, 准教授 … More
2006: 大阪大学, 大学院情報科学研究科, 助教授
2004 – 2005: 大阪大学, 大学院・情報科学研究科, 助教授
2002 – 2003: 大阪大学, 情報科学研究科, 助教授
2001: 大阪大学, 基礎工学研究科, 助手 Less
Review Section/Research Field
Principal Investigator
Bioinformatics/Life informatics / Life / Health / Medical informatics / 基礎ゲノム科学 / Developmental biology
Except Principal Investigator
Science and Engineering / Basic Section 59040:Nutrition science and health science-related / Fundamental law / Applied health science / System genome science / Library and information science/Humanistic social informatics
Keywords
Principal Investigator
バイオインフォマティクス / 生物情報学 / ゲノム / アライメント / 発現プロファイル / 遺伝子 / Devide & Reconstruction / 小観測点 / 大規模 / インタラクティブ性 … More / 変数選択 / 因果関係 / 大規模データ / 一塩基多型 / 遺伝子制御ネットワーク / ベイジアンネットワーク / ゲノムマッピング / ガロア拡大体 / DNA配列 / 次世代シークエンサー / 完全線形符号 / 対立染色体配列 / 対立染色体 / 次世代シーケンサー / 生体生命情報学 / 種間比較 / 組織特異性 / CAGE / バイオインフォマティク / 相互情報量 / DNA / カーネル関数 / 発現パターン / クラスタリング / cDNA … More
Except Principal Investigator
エピジェネティクス / 一卵性双生児 / 生活習慣病 / 臨床検査 / 双生児 / エピゲノム / バイオインフォマティクス / 異種データベース / 情報システム / データグリッド / 臨床検査値 / 免疫グロブリン / 甲状腺機能 / HbA1c / eQTL / eQTM / 脂質代謝 / 遺伝要因 / 環境要因 / アディポネクチン / 法令語語彙のオントロジー / 法令翻訳辞書 / 国際共同研究 / 法令語彙のオントロジー / 漢字文化圏 / 比較法 / 性差 / 遺伝子型 / DNAメチル化 / 甲状腺疾患 / 遺伝因子 / 環境因子 / 甲状腺 / 自己免疫疾患 / 自己抗体 / 遺伝子発現解析 / 遺伝子発現プロファイル / 遺伝子制御ネットワーク / ベイジアンネットワーク / 細胞分化 / 遺伝子ネットワーク / フライメント / 地方分権 / 例規 / アライメント / 自動抽出 / 計算機 / 条例 / 道州制 / 都道府県 / 言語処理 / 大規模ファルシステム / ワークフロー / Webサービス / 大規模ファイルシステム / 情報検索 Less
  • Research Projects

    (13 results)
  • Research Products

    (132 results)
  • Co-Researchers

    (8 People)
  •  Environmental factors influencing lifestyle-related diseases based on epigenomic information and clinical laboratory values of twins.

    • Principal Investigator
      WATANABE Mikio
    • Project Period (FY)
      2019 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 59040:Nutrition science and health science-related
    • Research Institution
      Osaka University
  •  Creation of a research base through a comparison of the terminology of six basics laws in East Asian jurisdictions

    • Principal Investigator
      Matsuura Yoshiharu
    • Project Period (FY)
      2017 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Fundamental law
    • Research Institution
      Nagoya University
  •  Rigorous analysis of epigenetic factors associating with the clinical course of diseases using discordant monozygotic twin pairs

    • Principal Investigator
      WATANABE Mikio
    • Project Period (FY)
      2016 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Applied health science
    • Research Institution
      Osaka University
  •  Proposal of interactive large scale Bayesian network estimation method and its application to biological dataPrincipal Investigator

    • Principal Investigator
      takenaka yoichi
    • Project Period (FY)
      2015 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Kansai University
      Osaka University
  •  Faster genome mapping method using 4-ary Perfect Linear CodePrincipal Investigator

    • Principal Investigator
      takenaka yoichi
    • Project Period (FY)
      2012 – 2015
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Osaka University
  •  Development of Gene Regulatory Network Analysis Methods for Revealing Cell Differentiation Processes

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      2010 – 2012
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      System genome science
    • Research Institution
      Osaka University
  •  Accuracy improvement of allele and gene expression analyses by next generation sequencerPrincipal Investigator

    • Principal Investigator
      TAKENAKA Yoichi
    • Project Period (FY)
      2010 – 2012
    • Research Category
      Grant-in-Aid for Young Scientists (A)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Osaka University
  •  Computer based methods for automatic sampling and correspondence table generation for similar regulations among multiple municipalities

    • Principal Investigator
      WAKAO Takeshi
    • Project Period (FY)
      2009 – 2013
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Library and information science/Humanistic social informatics
    • Research Institution
      Dokkyo University
  •  データグリッドによる異分野科学データベース統合技術の開発

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      2007 – 2008
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Osaka University
  •  Tissue Specific Analysis of Human and Mouse using CAGE absolute gene expression profilesPrincipal Investigator

    • Principal Investigator
      TAKENAKA Yoichi
    • Project Period (FY)
      2007 – 2009
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      基礎ゲノム科学
    • Research Institution
      Osaka University
  •  異分野科学データベースからの大量情報統合技術の開発

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      2006
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Osaka University
  •  相互情報量に基づいた遺伝子配列アライメントの高速化手法に関する研究Principal Investigator

    • Principal Investigator
      竹中 要一
    • Project Period (FY)
      2003 – 2005
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Osaka University
  •  幾何構造を利用したクラスタリングによるcDNAの組織別発現パターン解析Principal Investigator

    • Principal Investigator
      竹中 要一
    • Project Period (FY)
      2001 – 2002
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Developmental biology
    • Research Institution
      Osaka University

All 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 Other

All Journal Article Presentation

  • [Journal Article] Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells2018

    • Author(s)
      Takenaka Yoichi、Mikami Kazuma、Seno Shigeto、Matsuda Hideo
    • Journal Title

      BMC Bioinformatics

      Volume: 19 Issue: S4

    • DOI

      10.1186/s12859-018-2072-y

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Journal Article] Genotype-based epigenetic differences in monozygotic twins discordant for positive anti-thyroglobulin autoantibodies.2018

    • Author(s)
      Watanabe, M., Takenaka, Y., Honda, C., Osaka Twin Research Group, Iwatani, Y.
    • Journal Title

      Thyroid

      Volume: 28 Pages: 110-123

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16H03261
  • [Journal Article] Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells2018

    • Author(s)
      Yoichi Takenaka, Kazuma Mikami, Shigeto Seno, Hideo Matsuda
    • Journal Title

      BMC bioinformatics

      Volume: 19

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Journal Article] Genotype-Based Epigenetic Differences in Monozygotic Twins Discordant for Positive Antithyroglobulin Autoantibodies2018

    • Author(s)
      Watanabe Mikio、Takenaka Yoichi、Honda Chika、Osaka Twin Research Group、Iwatani Yoshinori
    • Journal Title

      Thyroid

      Volume: 28 Issue: 1 Pages: 110-123

    • DOI

      10.1089/thy.2017.0273

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17H04111, KAKENHI-PROJECT-15K00402, KAKENHI-PROJECT-16H03261
  • [Journal Article] Chromatin 3D reconstruction from chromosomal contacts using a genetic algorithm2018

    • Author(s)
      Viacheslav Kapilevich, Shigeto Seno, Hideo Matsuda, Yoichi Takenaka
    • Journal Title

      IEEE/ACM Transactions on Computational Biology and Bioinformatics

      Volume: - Issue: 5 Pages: 1-1

    • DOI

      10.1109/tcbb.2018.2814995

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00403, KAKENHI-PROJECT-15K00402
  • [Journal Article] Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution2016

    • Author(s)
      Yoichi Takenaka, Shigeto Seno, Hideo Matsuda
    • Journal Title

      J. Bioinformatics and Computational Biology

      Volume: 13 Issue: 05 Pages: 1543002-1543020

    • DOI

      10.1142/s0219720015430027

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-15K00402, KAKENHI-PROJECT-24700294, KAKENHI-PROJECT-26280106
  • [Journal Article] Metagenome fragment classification based on multiple motif-occurrence profiles2014

    • Author(s)
      Naoki Matsushita, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      PeerJ

      Volume: 2: e559 Pages: 1-13

    • DOI

      10.7717/peerj.559

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-24650155, KAKENHI-PROJECT-24700294, KAKENHI-PROJECT-26280106
  • [Journal Article] n estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles2013

    • Author(s)
      Ryo Araki, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      Gene

      Volume: Volume 518, Isusue 1 Pages: 17-25

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Journal Article] An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles2013

    • Author(s)
      Ryo Araki, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      Gene

      Volume: Vol.518 Issue: 1 Pages: 17-25

    • DOI

      10.1016/j.gene.2012.11.090

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125, KAKENHI-PROJECT-22680023, KAKENHI-PROJECT-24650155, KAKENHI-PROJECT-24700294
  • [Journal Article] 複数時系列遺伝子発現プロファイルを利用した遺伝子制御ネットワーク推定の精度向上手法2013

    • Author(s)
      渡邉之人, 瀬尾茂人, 竹中要一, 松田秀雄
    • Journal Title

      情報処理学会論文誌 数理モデル化と応用

      Volume: 6 Pages: 151-162

    • NAID

      110009550160

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Journal Article] A method for isoform prediction from RNA-Seq data by iterative mapping2012

    • Author(s)
      Tomoshige Ohno, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics

      Volume: Vol.5 Pages: 27-33

    • NAID

      130002124175

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Journal Article] A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping2012

    • Author(s)
      Tomoshige Ohno, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics

      Volume: 5 Issue: 0 Pages: 27-33

    • DOI

      10.2197/ipsjtbio.5.27

    • NAID

      130002124175

    • ISSN
      1882-6679
    • Language
      English
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Journal Article] 地方自治体の例規比較に用いる条文対応表の作成支援2012

    • Author(s)
      竹中要一, 若尾岳志
    • Journal Title

      自然言語処理

      Volume: Vol. 19 Num.3 Pages: 193-212

    • NAID

      10031117753

    • Data Source
      KAKENHI-PROJECT-21500253
  • [Journal Article] An Estimation Method for Inference of Gene Regulatory Network Using Bayesian Network with Uniting of Partial Problems2012

    • Author(s)
      Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      BMC Genetics

      Volume: Vol. 13(suppl 1)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Journal Article] 地方自治体の例規比較に用いる条文対応表の作成支援2012

    • Author(s)
      竹中要一、若尾岳志
    • Journal Title

      自然言語処理

      Volume: Vol.19 No.3 Pages: 193-212

    • NAID

      10031117753

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21500253
  • [Journal Article] An estimation method for inference of gene regulatory network using Bayesian network with uniting of partial problems2012

    • Author(s)
      Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      BMC Genomics

      Volume: Vol.13 Issue: Suppl 1 Pages: S12-S12

    • DOI

      10.1186/1471-2164-13-s1-s12

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125, KAKENHI-PROJECT-22680023
  • [Journal Article] 細胞分化クロストークのモデル化と細胞分化クロストーク遺伝子の推定手法2011

    • Author(s)
      吉澤陽志、瀬尾茂人、竹中要一、松田秀雄
    • Journal Title

      情報処理学会論文誌 数理モデル化と応用(TOM)

      Volume: Vol. 4, No. 4 Pages: 59-68

    • NAID

      40019257169

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Journal Article] Perfect Hamming code with a hash table for faster genome mapping2011

    • Author(s)
      Yoichi Takenaka
    • Journal Title

      BMC Genomics

      Volume: Vol.12 Issue: Suppl 3 Pages: S8-S8

    • DOI

      10.1186/1471-2164-12-s3-s8

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125, KAKENHI-PROJECT-22680023
  • [Journal Article] Inference of S-system Models of Gene Regulatory Networks using Immune Algorithm2011

    • Author(s)
      Tomoyoshi Nakayama, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      Journal of Bioinformatics and Computational Biology

      Volume: Vol. 9(suppl 01)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Journal Article] 細胞分化クロストークのモデル化と細胞分化クロストーク遺伝子の推定手法2011

    • Author(s)
      吉澤陽志、瀬尾茂人、竹中要一、松田秀雄
    • Journal Title

      情報処理学会論文誌数理モデル化と応用(TOM)

      Volume: 4 Pages: 59-68

    • NAID

      40019257169

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Journal Article] 細胞分化クロストークのモデル化と細胞分化クロストーク遺伝子の推定手法2011

    • Author(s)
      吉澤陽志, 瀬尾茂人, 竹中要一, 松田秀雄
    • Journal Title

      情報処理学会論文誌 数理モデル化と応用

      Volume: 4巻 Pages: 59-68

    • NAID

      40019257169

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Journal Article] Inference of S-system models of gene regulatory networks using immune algorithm2011

    • Author(s)
      Tomoyoshi Nakayama, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      Journal of Bioinformatics and Computational Biology

      Volume: Vol.9 Issue: supp01 Pages: 75-86

    • DOI

      10.1142/s0219720011005768

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Journal Article] Gene expression profile prospectively predicts peritoneal relapse after curative surgery of gastric cancer2010

    • Author(s)
      A.Takeno, I.Takemasa, S.Seno, M.Yamasaki, M.Motoori, H.Miyata, K.Nakajima, S.Takiguchi, Y.Fujiwara, T.Nishida, T.Okayama, K.Matsubara, Y.Takenaka, H.Matsuda, M.Monden, M.Mori, Y.Doki
    • Journal Title

      Annals of Surgical Oncology

      Volume: Vol.17 Pages: 1033-1042

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Journal Article] The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line2009

    • Author(s)
      Harukazu Suzuki, Alistair R R Forrest,Erik van Nimwegen, Carsten O Daub, PiotrJ Balwierz, Katharine M Irvine, TimoLassmann, Timothy Ravasi, Yuki Hasegawa,Michiel J L de Hoon, Shintaro Katayama,Kate Schroder, Piero Carninci, YasuhiroTomaru, Mutsumi Kanamori-Katayama,Atsutaka Kubosaki, Altuna Akalin,Yoshinari Ando, Erik Arner, Maki Asada,Hiroshi Asahara, Timothy Bailey, VladimirB Bajic, Denis Bauer, Anthony G Beckhouse,intracellularjunctioncell-cell adhegapjunction rensjunctiondesmosome tight junctionplasmodesma subapical complexapical complexconnexsoncomplexspot adherensjunctionzonulaadherensfasciaadherensinter cellularcanaliculus468403112717929278233802138114420133588193782742632424GO term liverlungNicolas Bertin, Johan Bjoerkegren, FrankBrombacher, Erika Bulger, Alistair M Chalk,Joe Chiba, Nicole Cloonan, Adam Dawe,Josee Dostie, Paer G Engstroem, MagbubahEssack, Geoffrey J Faulkner, J Lynn Fink,David Fredman, Ko Fujimori, Masaaki Furuno,Takashi Gojobori, Julian Gough, Sean MGrimmond, Mika Gustafsson, MegumiHashimoto, Takehiro Hashimoto, MarikoHatakeyama, Susanne Heinze, Winston Hide,Oliver Hofmann, Michael Hoernquist,Lukasz Huminieck, Kazuho Ikeo, NaokoImamoto, Satoshi Inoue, Yusuke Inoue,Ryoko Ishihara, Takao Iwayanagi, AndersJacobsen, Mandeep Kaur, Hideya Kawaji,Markus C Kerr1, Ryuichiro Kimura, SyuheiKimura, Yasumasa Kimura, Hiroaki Kitano,Hisashi Koga, Toshio Kojima, Shinji Kondo,Takeshi Konno, Anders Krogh, Adele Kruger,Ajit Kumar, Boris Lenhard, AndreasLennartsson, Morten Lindow, Marina Lizio,Cameron MacPherson, Norihiro Maeda,Christopher A Maher, Monique Maqungo,Jessica Mar, Nicholas A Matigian, HideoMatsuda, John S Mattick, Stuart Meier, SeiMiyamoto, Etsuko Miyamoto-Sato, KazuhikoNakabayashi, Yutaka Nakachi, Mika Nakano,Sanne Nygaard, Toshitsugu Okayama,Yasushi Okazaki, Haruka Okuda-Yabukami,Valerio Orlando, Jun Otomo, MikhailPachkov, Nikolai Petrovsky, CharlesPlessy, John Quackenbush, AleksandarRadovanovic, Michael Rehli, Rintaro Saito,Albin Sandelin, Sebastian Schmeier,Christian Schoenbach, Ariel S Schwartz,Colin A Semple, Miho Sera, Jessica Severin,Katsuhiko Shirahige, Cas Simons, George St.Laurent, Masanori Suzuki, Takahiro Suzuki,Matthew J Sweet, Ryan J Taft, Shizu Takeda,Yoichi Takenaka, Kai Tan, Martin S Taylor,Rohan D Teasdale, Jesper Tegne'r, SarahTeichmann, Eivind Valen, Claes Wahlestedt,Kazunori Waki, Andrew Waterhouse,Christine A Wells, Ole Winther, Linda Wu,Kazumi Yamaguchi, Hiroshi Yanagawa, JunYasuda, Mihaela Zavolan, David A Hume,Takahiro Arakawa, Shiro Fukuda, KengoImamura, Chikatoshi Kai, Ai Kaiho, TsugumiKawashima, Chika Kawazu, Yayoi Kitazume,Miki Kojima, Hisashi Miura, KayokoMurakami, Mitsuyoshi Murata, NorikoNinomiya, Hiromi Nishiyori, Shohei Noma,Chihiro Ogawa, Takuma Sano, ChristopheSimon, Michihira Tagami, Yukari Takahashi,Jun Kawai, Yoshihide Hayashizaki
    • Journal Title

      Nature Genetics Vol.41,No.5

      Pages: 553-562

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19710166
  • [Journal Article] A Distributed-Processing System for Accelerating Biological Research using Data-Staging2008

    • Author(s)
      Y., Kido・S., Seno・S., Date・Y., Takenaka・H., Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics (印刷中)

    • NAID

      110006684910

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Journal Article] A Distributed-Processing System for Accelerating Biological Research using Data-Staging2008

    • Author(s)
      Yoshiyuki Kido, Shigeto Seno, Susumu Date, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics Vol.49,No.SIG5(TBIO4)

      Pages: 58-64

    • NAID

      110006684910

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19710166
  • [Journal Article] A Combination Method of the Tanimoto Coefficient and Proximity Measure of Random Forest for Compound Activity Prediction2008

    • Author(s)
      G., Kawamura・S., Seno・Y., Takenaka・H., Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics (印刷中)

    • NAID

      110006824830

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Journal Article] Tissue-specific functions based on information content of gene ontology using cap analysis gene expression2007

    • Author(s)
      Sami Maekawa, Atsuko Matsumoto, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      Medical and Biological Engineering and Computing Vol.45,No.11

      Pages: 1029-1036

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19710166
  • [Journal Article] Inference of Transcriptional Regulatory Networks using CAGE Transcriptome Dataset of Mus musculus2006

    • Author(s)
      K.Taki, Y.Takenaka, H.Matsuda
    • Journal Title

      Proceedings of World Congress on Medical Physics and Biomedical Engineering (CD-ROM)

    • Data Source
      KAKENHI-PROJECT-18049053
  • [Journal Article] Extraction of Functionally Similar Bioinformatics Workflows2006

    • Author(s)
      J.Seo, S.Seno, Y.Takenaka, H.Matsuda
    • Journal Title

      Proceedings of International Workshop on Dstibute Applications, Web Services, Tools and GRID Infrastructures for Bioinformatics 6

      Pages: 70-74

    • Data Source
      KAKENHI-PROJECT-18049053
  • [Journal Article] 遺伝子発現プロファイルを用いた遺伝子制御ネットワーク推定のためのバイクラスタリングの応用2006

    • Author(s)
      瀧浩平, 竹中要一, 松田秀雄
    • Journal Title

      情報処理学会論文誌 : 数理モデル化と応用 47・15

      Pages: 118-128

    • Data Source
      KAKENHI-PROJECT-18049053
  • [Journal Article] A Method for Exploring Tissue-Specific Functions based on Information Content of Gene Ontology Terms using CAGE Tags2006

    • Author(s)
      S.Maekawa, A.Matsumoto, Y.Takenaka, H.Matsuda
    • Journal Title

      Proceedings of World Congress on Medical Physics and Biomedical Engineering (CD-ROM)

    • Data Source
      KAKENHI-PROJECT-18049053
  • [Journal Article] Retrieving Functionally Similar Bioinformatics Workflows using TF-IDF Filtering

    • Author(s)
      J.Seo, S.Seno, Y.Takenaka, H.Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics (印刷中)

    • NAID

      110006595438

    • Data Source
      KAKENHI-PROJECT-18049053
  • [Presentation] 明治民法と各国民法との条文類似関係にもとづく立脚点の解析2020

    • Author(s)
      小山凱丈, 佐野智也, 竹中要一
    • Organizer
      言語処理学会第26回年次大会(NLP2020)
    • Data Source
      KAKENHI-PROJECT-17H00952
  • [Presentation] 明治民法制定時における日仏民法条文の参照関係再推定2019

    • Author(s)
      小山凱丈, 佐野智也, 竹中要一
    • Organizer
      言語処理学会第25回年次大会(NLP2019)
    • Data Source
      KAKENHI-PROJECT-17H00952
  • [Presentation] Transition of regulatory force toward the gene expressions during osteoblast cell differentiation2019

    • Author(s)
      Yoichi Takenaka
    • Organizer
      Pacific Symposium on Biocomputing (PSB)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Genotype-based epigenetic factors in identical twins discordant for positive TgAb2018

    • Author(s)
      Watanabe, M., Takenaka, Y., Honda, C., Osaka Twin Research Group, Iwatani, Y.
    • Organizer
      AACC Annual Meeting & Clinical Lab Expo 2018
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Genotype-based epigenetic factors in identical twins discordant for positive TgAb2018

    • Author(s)
      Watanabe, M., Takenaka, Y., Honda, C., Osaka Twin Research Group, Iwatani, Y.
    • Organizer
      AACC Annual Meeting & Clinical Lab Expo 2018, Chicago, Jul 31st, 2018
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H03261
  • [Presentation] TgAb出現が一致しない一卵性双生児ペアを対象とした、自己抗体出現に関するエピゲノム要因の解析2018

    • Author(s)
      渡邉幹夫、竹中要一、本多智佳、大阪ツインリサーチグループ、岩谷良則
    • Organizer
      第61回日本甲状腺学会学術集会
    • Data Source
      KAKENHI-PROJECT-16H03261
  • [Presentation] Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells2018

    • Author(s)
      Yoichi Takenaka, Kazuma Mikami, Shigeto Seno, Hideo Matsuda
    • Organizer
      The 16th Asia Pacific Bioinformatics Conference (APBC2018)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Genotype-based epigenetic factors in identical twins discordant for positive TgAb2018

    • Author(s)
      Watanabe, M., Takenaka, Y., Honda, C., Osaka Twin Research Group, Iwatani, Y.
    • Organizer
      AACC Annual Meeting & Clinical Lab Expo 2018
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H03261
  • [Presentation] Nonconvex Discrete Optimization Approach for High Dimensional Regression2018

    • Author(s)
      Nakagawa Y., Hanada Y., Takenaka, Y., Edirishinghe C.
    • Organizer
      INFORMS annual meeting 2018
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] TgAb出現が一致しない一卵性双生児ペアを対象とした、自己抗体出現に関するエピゲノム要因の解析2018

    • Author(s)
      渡邉幹夫、竹中要一、本多智佳、大阪ツインリサーチグループ、岩谷良則、
    • Organizer
      第61回日本甲状腺学会学術集会(川越)、2018.11.23
    • Data Source
      KAKENHI-PROJECT-16H03261
  • [Presentation] Functional analysis of metagenome using composition- based method2018

    • Author(s)
      Meya Cho, Shigeto Seno, Hideo Matsuda and Yoichi Takenaka
    • Organizer
      The 16th Asia Pacific Bioinformatics Conference
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Missing value imputation for gene expression data with Deep Learning2018

    • Author(s)
      Kazumasa Saito, Shigeto Seno, Hideo Matsuda and Yoichi Takenaka
    • Organizer
      The 16th Asia Pacific Bioinformatics Conference
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Genotype specific for monozygotic twins discordant for anti-thyrogrobulin autoantibody (TgAb) positivity.2017

    • Author(s)
      Watanabe, M., Takenaka, Y., Honda, C., Osaka Twin Research Group, Iwatani, Y.
    • Organizer
      The 16th Congress of the International Society for Twin Studies (ISTS), Madrid, Nov. 16-18, 2017
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H03261
  • [Presentation] Clustering of cells for single cell analysis using Latent Dirichlet Allocation2017

    • Author(s)
      Mitsuhiro Eto, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      ISMB/ECCB 2017
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] A method for reducing false positives of target genes of microRNAs by combining two prediction tools2016

    • Author(s)
      Hideo Matsuda, Junko Tsuda, Shigeto Seno, Yoichi Takenaka
    • Organizer
      International Conference on Intelligent Systems for Molecular Biology (ISMB2016)
    • Place of Presentation
      Orlando, Florida, USA
    • Year and Date
      2016-07-10
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] 乳癌データベースを用いた遺伝子発現プロファイルの数値変換の検討2016

    • Author(s)
      草田義昭, 瀬尾茂人, 竹中要一, 野口眞三郎, 松田秀雄
    • Organizer
      第45回バイオ情報学研究発表会 2016-BIO-45-7
    • Place of Presentation
      JAIST
    • Year and Date
      2016-03-18
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Detect the time point when organisms toggle gene regulatory networks from their expression profiles2016

    • Author(s)
      Yoichi Takenaka
    • Organizer
      Study Sessions on Bioinformatics and Related Topics, IFrec Osaka University
    • Place of Presentation
      IFrec Osaka
    • Year and Date
      2016-02-04
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Comparative analysis of transformation methods for gene expression profiles in breast cancer datasets2016

    • Author(s)
      Yoshiaki Sota, Shigeto Seno, Yoichi Takenaka, Shinzaburo Noguchi, Hideo Matsuda
    • Organizer
      IEEE 16th International Conference on Bioinformatics and Bioengineering (BIBE 2016)
    • Place of Presentation
      Splendor Hotel, Taichung, Taiwan
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Bayesian Network Inference from gene expression profiles with a small number of samples2016

    • Author(s)
      Kazumasa Saito, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 20th Annual International Conference on Research in Computational Molecular Biology, RECOMB2016
    • Place of Presentation
      Loews, Santa Monica, CA, USA
    • Year and Date
      2016-04-18
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Dynamic Analysis of Gene Regulations using Leaving-One-Out Expression Profile,2016

    • Author(s)
      Yoichi Takenaka, Shgeto Seno, Hideo Matsuda
    • Organizer
      The 20th Annual International Conference on Research in Computational Molecular Biology,
    • Place of Presentation
      LA Santa Monica
    • Year and Date
      2016-04-18
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] 小サンプル数データに対するベイジアンネットワークのスコアベース構造学習改善手法2016

    • Author(s)
      齋藤和正, 瀬尾茂人, 竹中要一, 松田秀雄
    • Organizer
      第45回バイオ情報学研究発表会 2016-BIO-45-1
    • Place of Presentation
      JAIST
    • Year and Date
      2016-03-18
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] An accurate estimation method for expression profiles of novel transcripts from RNA-Seq data2016

    • Author(s)
      Fuki Iwasaki, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      International Conference on Intelligent Systems for Molecular Biology (ISMB2016)
    • Place of Presentation
      Orlando, Florida, USA
    • Year and Date
      2016-07-10
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Bayesian Network Inference from gene expression profiles with a small number of samples2016

    • Author(s)
      Kazumasa Saito, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 20th Annual International Conference on Research in Computational Molecular Biology,
    • Place of Presentation
      LA Santa Monica
    • Year and Date
      2016-04-18
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Dynamic Analysis of Gene Regulations using Leaving-One-Out Expression Profile2016

    • Author(s)
      Yoichi Takenaka, Shigeto Seno, Hideo Matsuda
    • Organizer
      The 20th Annual International Conference on Research in Computational Molecular Biology, RECOMB2016
    • Place of Presentation
      Loews, Santa Monica, CA, USA
    • Year and Date
      2016-04-18
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Detecting the shifts of gene regulatory networks during time-course experiments with a single time point temporal resolution2015

    • Author(s)
      Yoichi Takenaka, Shigeto Seno, Hideo Matsuda
    • Organizer
      GIW/InCoB2015
    • Place of Presentation
      Odaiba, Tokyo
    • Year and Date
      2015-09-09
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] Identification of the state-change-time-point of gene regulations from time-course experiments2015

    • Author(s)
      Yoichi Takenaka
    • Organizer
      The second workshop on Advanced Methodologies for Bayesian Networks
    • Place of Presentation
      Yokohama
    • Year and Date
      2015-11-16
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] ダイナミックベイジアンネットワークを用いた遺伝子制御ネットワーク推定の部分問題化による近似解法2015

    • Author(s)
      上木怜, 瀬尾茂人, 竹中要一, 松田秀雄
    • Organizer
      情報処理学会研究報告, 第42回バイオ情報学研究会
    • Place of Presentation
      OIST
    • Year and Date
      2015-06-23
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] 風が吹くといつ桶屋は儲かるの? 遺伝子発現制御の時間変化解析2015

    • Author(s)
      竹中要一
    • Organizer
      第4回NGS現場の会
    • Place of Presentation
      つくば
    • Year and Date
      2015-07-01
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] 共通k-mer種別数に基づくメタゲノム分類手法2015

    • Author(s)
      吉田拓真, 瀬尾茂人, 竹中要一, 松田秀雄
    • Organizer
      第4回NGS現場の会
    • Place of Presentation
      つくば
    • Year and Date
      2015-07-01
    • Data Source
      KAKENHI-PROJECT-15K00402
  • [Presentation] 共通k-mer種別数に基づくメタゲノム分類手法2015

    • Author(s)
      吉田拓真, 瀬尾茂人, 竹中要一, 松田秀雄
    • Organizer
      第4回NGS現場の会
    • Place of Presentation
      つくば国際会議場 (茨城県つくば市)
    • Year and Date
      2015-07-01
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] 都道府県に共通する例規の自動抽出2014

    • Author(s)
      竹中要一, 若尾岳志
    • Organizer
      言語処理学会第20回年次大会
    • Place of Presentation
      北海道大学(B6-4)
    • Year and Date
      2014-03-20
    • Data Source
      KAKENHI-PROJECT-21500253
  • [Presentation] Multiplication of Motif Occurrence Profiles for Metagenome Fragment Classification2013

    • Author(s)
      Naoki Matsushita, Hiromi Daiyasu, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      35th Annual International IEEE EMBS Conference
    • Place of Presentation
      Osaka JAPAN
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] Integrative prediction of miRNA-mRNA interactions from high-throughput sequencing data2013

    • Author(s)
      Tomoshige Ohno, Shigeto Seno, Hiromi Daiyasu, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      RECOMB/ISCB Conference on Regulatory and Systems Genomics, with DREAM Challenges 2013
    • Place of Presentation
      Toronto, CANADA
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] Gene Set Enrichment Analysis for a Long Time Series Gene Expression Profile2013

    • Author(s)
      Yuta Okuma, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 2013 World Congress in Computer Science Computer Engineering and Applied Computing (BIOCOMP'13)
    • Place of Presentation
      Las Vegas,USA
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] Gene Set Enrichment Analysis for Time-Series Gene Expression Profile2013

    • Author(s)
      Yuta Okuma, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      35th Annual International IEEE EMBS Conference
    • Place of Presentation
      Osaka JAPAN
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] 長いリードを計算機で扱うのに完全線形符号が効果的だと思うのです2013

    • Author(s)
      竹中要一, 瀬尾茂人, 松田秀雄
    • Organizer
      第三回NGS現場の会
    • Place of Presentation
      Kobe JAPAN
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] 多次元尺度構成法によるリード分類結果の視覚化2013

    • Author(s)
      吉田拓真, 竹中要一, 瀬尾茂人, 松田秀雄
    • Organizer
      第三回NGS現場の会
    • Place of Presentation
      Kobe JAPAN
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] Reconstruction of Dynamic Gene Regulatory Networks for Cell Differentiation by Separation of Time-course Data2013

    • Author(s)
      Tomoyoshi Nakayama, Hiromi Daiyasu, Shigeto Seno, Yoichi Takenaka
    • Organizer
      The 2013 World Congress in Computer Science Computer Engineering and Applied Computing (BIOCOMP'13)
    • Place of Presentation
      Las Vegas, USA
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] Improvement of the Accuracy of Mapping by Composing Alleles2013

    • Author(s)
      奥田華代,竹中要一,大野朋重,瀬尾茂人,松田秀雄
    • Organizer
      理学会 第75回全国大会
    • Place of Presentation
      東北大学川内キャンパス 宮城
    • Year and Date
      2013-03-06
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] 複数時系列遺伝子発現プロファイルを利用した遺伝子制御ネットワーク推定の精度向上手法2013

    • Author(s)
      渡邉之人,瀬尾茂人,竹中要一,松田秀雄
    • Organizer
      情報処理学会研究報告 第92回数理モデル化と問題解決
    • Place of Presentation
      佐賀県武雄市 武雄市文化会館
    • Year and Date
      2013-02-27
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] A Method of Sequence Analysis for High-Throughput Sequencer Data Based on Shifted Short Read Clustering2013

    • Author(s)
      Kensuke Suzuki, Daisuke Ueta, Shigeto Seno, Yoichi Takenaka
    • Organizer
      The 2013 World Congress in Computer Science Computer Engineering and Applied Computing (BIOCOMP'13)
    • Place of Presentation
      Las Vegas USA
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] All the 1+3n one-mismatch sequences of n-mer DNA are involved in 22.2+0.00879n strings of Perfect Linear Code words on DNA2012

    • Author(s)
      Yoichi Takenaka, Shigeto Seno, Hideo Matsuda
    • Organizer
      International Conference on Intelligent Systems for Molecular Biology (ISMB2012)
    • Place of Presentation
      Longbeach CA USA
    • Year and Date
      2012-07-17
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles2012

    • Author(s)
      Ryo Araki, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Proceedings of the 2012 International Conference on 図 2 細胞分化系列における発現解析手法図 3 アイソフォームと発現量の同時推定法 Genome Informatics (GIW2012)
    • Place of Presentation
      Tainan, TAIWAN
    • Year and Date
      2012-12-13
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Bayes-based inference of gene regulatory network for multiple time series gene expression profile, Joint Conference on Informatics is Biology2012

    • Author(s)
      Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Medicine and Pharmacology (日本バイオインフォマティクス学会 2012年年会 生命医薬情報学連合大会)
    • Place of Presentation
      Tower hall Funabori, Tokyo
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Comparison of Gene Expressions measured by RNA-seq and Microarray for Transcriptome Analysis of Adipose Tissues, Joint Conference on Informatics is Biology2012

    • Author(s)
      Masakazu Sugiyama, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Medicine and Pharmacology (日本バイオインフォマティクス学会 2012年年会生命医薬情報学連合大会)
    • Place of Presentation
      Tower hall Funabori, Tokyo
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Perfect linear code reduces the solution space of genome mapping from 1+3n to 22.2 + 0.00879n to find one-mismatch for n-mer short reads2012

    • Author(s)
      Yoichi Takenaka
    • Organizer
      Special Interest Group Meetings of High-Throughput Sequencing at International Conference on Intelligent Systems for Molecular Biology
    • Place of Presentation
      CA USA
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] An Estimation Method for Inference of Gene Regulatory Network Using Bayesian Network with Uniting of Partial Problems2012

    • Author(s)
      Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The tenth Asia Pacific Bioinformatics Conference (APBC2012)
    • Place of Presentation
      Melbourne, Australia
    • Year and Date
      2012-01-17
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Perfect linear code reduces the solution space of genome mapping from 1+3n to 22.2 + 0.00879n to find one-mismatch for n-mer short reads2012

    • Author(s)
      Yoichi Takenaka, Shigeto Seno, Hideo Matsuda
    • Organizer
      Special Interest Group Meetings of High-Throughput Sequencing at International Conference on Intelligent Systems for Molecular Biology (ISMB2012)
    • Place of Presentation
      Longbeach CA USA
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Transcript-Type Dependent Normalization of Expression Levels in RNA-Seq Data for Non-Coding RNA Analysis, Joint Conference on Informatics is Biology2012

    • Author(s)
      Tomoshige Ohno, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Medicine and Pharmacology (日本バイオインフォマティクス学会 2012年年会 生命医薬情報学連合大会)
    • Place of Presentation
      Tower hall Funabori, Tokyo
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Perfect linear code reduces the solution space of genome mapping from 1+3n to 22.2 + 0.00879n to find one-mismatch for n-mer short reads2012

    • Author(s)
      Yoichi Takenaka
    • Organizer
      Special Interest Group Meetings of High-Throughput Sequencing at International Conference on Intelligent Systems for Molecular Biology (ISMB2012)
    • Place of Presentation
      CA USA
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] Estimate Dynamic Gene Regulatory Networks in Adipocyte Differentiation for Detecting Changes of Gene Regulations by Splitting Time Course Data2012

    • Author(s)
      Tomoyoshi Nakayama, Yoshiyuki Kido,Hiromi Daiyasu, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      23rd International Conference on Genome Informatics(GIW2012)
    • Place of Presentation
      National Cheng Kung University, Tainan, Taiwan
    • Year and Date
      2012-12-13
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Estimation of Dynamic Gene Regulatory Networks for Cell Differentiation by Splitting Time Course Data, Joint Conference on Informatics is Biology2012

    • Author(s)
      Tomoyoshi Nakayama, Yoshiyuki Kido, Hiromi Daiyasu, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Medicine and Pharmacology (日本バイオインフォマティクス学会 2012年年会 生命医薬情報学連合大会)
    • Place of Presentation
      Tower hall Funabori, Tokyo
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Perfect Hamming code with Burrow-Wheeler translation for genome mapping2011

    • Author(s)
      Yoichi Takenaka, Shigeto Seno, Hideo Matsuda
    • Organizer
      InCoB/ISCB Asia 2011
    • Place of Presentation
      Kuala Lumpur MALAYSIA
    • Year and Date
      2011-12-01
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Direct unique gene regulatory networks along dendrogram of cell differentiation2011

    • Author(s)
      Ryo Araki, Yoichi Takenaka, Tomoshige Ohno, Yukito Watanabe, Shigeto Seno, Hideo Matsuda
    • Organizer
      InCoB/ISCB-Asia Joint Conference 2011
    • Place of Presentation
      Renaissance Hotel, Kuala Lumpur, Malaysia
    • Year and Date
      2011-11-30
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Network analysis for time-series expression profile using nested effects models2011

    • Author(s)
      Tatsuya Kitaguchi, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 2011 Joint Conference of CBI and JSBi (CBI/JSBi2011)
    • Place of Presentation
      Kobe International Conference Center, Hyogo.
    • Year and Date
      2011-11-08
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Sequence determination and expression estimation of alleles from RNA-Seq data2011

    • Author(s)
      Yoichi Takenaka, Tomoshige Ohno, Kayo Okuda, Shigeto Seno, Hideo Matsuda
    • Organizer
      InCoB/ISCB Asia 2011
    • Place of Presentation
      Kuala Lumpur MALAYSIA
    • Year and Date
      2011-11-30
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Perfect Hamming code with a hash table for faster genome mapping2011

    • Author(s)
      Yoichi Takenaka, Shigeto Seno and Hideo Matsuda
    • Organizer
      Asia Pacific Bioinformatics Network's 10th InCoB - 1st ISCB Asia Joint Conference 2011 (InCoB/ISCB Asia 2011)
    • Place of Presentation
      Kuala Lumpur MALAYSIA
    • Year and Date
      2011-11-30
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] 地方自治体の例規比較に用いる条文対応表の自動生成2011

    • Author(s)
      竹中要一、若尾岳志
    • Organizer
      言語処理学会 第17回年次大会
    • Place of Presentation
      豊橋技術科学大学
    • Year and Date
      2011-03-09
    • Data Source
      KAKENHI-PROJECT-21500253
  • [Presentation] A Directed Graphical Gaussian Model for Inferring Gene Regulatory Networks2011

    • Author(s)
      Tomoshige Ohno, Kiyoshi Yoshizawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2011)
    • Place of Presentation
      Austria Center Vienna, Vienna, Austria
    • Year and Date
      2011-07-19
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] A method for risk predicition of a serious disease using rule-based analysis2011

    • Author(s)
      Masakazu Sugiyama, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      ISMB/ECCB 2011
    • Place of Presentation
      ウィーン オーストリー
    • Year and Date
      2011-07-18
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] A Method for Inference of Gene Regulatory Network based on Bayesian Network with Uniting of Partial Problems2011

    • Author(s)
      Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      ISMB/ECCB 2011
    • Place of Presentation
      ウィーン オーストリー
    • Year and Date
      2011-07-17
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Perfect Hamming Code as Hash key for Fast Genome Mapping2011

    • Author(s)
      Yoichi Takenaka, Shigeto Seno, Hideo Matsuda
    • Organizer
      ISMB/ECCB 2011
    • Place of Presentation
      ウィーン オーストリー
    • Year and Date
      2011-07-18
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Perfect Hamming Code as Hash key for Fast Genome Mapping2011

    • Author(s)
      Yoichi Takenaka, Shigeto Seno, Hideo Matsuda
    • Organizer
      ISMB/ECCB 2011
    • Place of Presentation
      Vienna Australia
    • Year and Date
      2011-07-18
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] A Directed Graphical Gaussian Model for Inferring Gene Regulatory Networks2011

    • Author(s)
      Tomoshige Ohno, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      ISMB/ECCB 2011
    • Place of Presentation
      ウィーン オーストリー
    • Year and Date
      2011-07-18
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Inference of S-system Models of Gene Regulatory Networks using Immune Algorithm2011

    • Author(s)
      Tomoyoshi Nakayama, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Proceedings of the 2011 International Conference on Genome Informatics (GIW2011)
    • Place of Presentation
      Busan, KOREA
    • Year and Date
      2011-12-06
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Feature selection for specifying experimental conditions that activate gene transcriptions2011

    • Author(s)
      Sho Ohsuga, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      ISMB/ECCB 2011
    • Place of Presentation
      ウィーン オーストリー
    • Year and Date
      2011-07-18
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] 地方自治体の例規比較に用いる条文対応表の自動生成2011

    • Author(s)
      竹中要一, 若尾岳志
    • Organizer
      言語処理学会第17回年次大会発表論文集
    • Place of Presentation
      豊橋技術科学大学(p.520-523 (D2-5))
    • Year and Date
      2011-03-09
    • Data Source
      KAKENHI-PROJECT-21500253
  • [Presentation] Mutation-aware clustering with error correction for short-read genome mapping2011

    • Author(s)
      Daisuke Ueta, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 2011 Jointa Conference of CBI&JSBi
    • Place of Presentation
      Kobe
    • Year and Date
      2011-11-08
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] A Method for Inference of Gene Regulatory Network based on Bayesian Network with Uniting of Partial Problems2011

    • Author(s)
      Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2011)
    • Place of Presentation
      Austria Center Vienna, Vienna, Austria.
    • Year and Date
      2011-07-18
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] A Directed Graphical Gaussian Model for Inferring Gene Regulatory Networks2011

    • Author(s)
      Tomoshige Ohno, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      ISMB/ECCB 2011
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2011-07-18
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] A Method for Inference of Gene Regulatory Network based on Bayesian Network with Uniting of Partial Problems2011

    • Author(s)
      Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      ISMB/ECCB 2011
    • Place of Presentation
      Vienna, Austri
    • Year and Date
      2011-07-17
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] A Metadata Management System for Composing Bioinformatics Workflows2010

    • Author(s)
      Takuya Ishibashi, Yoshiyuki Kido, Takanori Fukumoto, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      9th International Conference on Bioinformatics
    • Place of Presentation
      東京
    • Year and Date
      2010-09-28
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] An estimation method of S-system model of gene regulatory networks using immune algorithm2010

    • Author(s)
      T.Nakayama, S.Seno, Y.Takenaka, H.Matsuda
    • Organizer
      International Conference on Intelligent Sysmtes for Molecular Biology (ISMB2010)
    • Place of Presentation
      Hynes Convention Center, Boston (USA)
    • Year and Date
      2010-07-12
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Revealing regulatory relationships of crosstalk with multiple time-series gene expression profiles2010

    • Author(s)
      Kiyoshi Yoshizawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Annual Conference of the Japanese Society for Bioinformatics
    • Place of Presentation
      福岡
    • Year and Date
      2010-12-13
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Revealing regulatory relationships of crosstalk with multiple time-series gene expression profiles2010

    • Author(s)
      Kiyoshi Yoshizawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 2010 Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)
    • Place of Presentation
      Centennial Hall, Kyushu University School of Medicine, Fukuoka.
    • Year and Date
      2010-12-13
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] An Improved RNA-Seq Analysis Method for Isoform Prediction by Iterative Mapping2010

    • Author(s)
      Tomoshige Ohno, Motokazu Ishikawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Proceedings of the 2010 International Conference on Genome Informatics (GIW2010)
    • Place of Presentation
      Hangzhou
    • Year and Date
      2010-12-16
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Revealing regulatory relationships of crosstalk with multiple time-series gene expression profiles2010

    • Author(s)
      K.Yoshizawa, S.Seno, Y.Takenaka, H.Matsuda
    • Organizer
      Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)
    • Place of Presentation
      九州大学医学部百年講堂、福岡県
    • Year and Date
      2010-12-13
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] A method for detecting structural variants from massive paired end genome sequences by mapping signatures2010

    • Author(s)
      Daisuke Ueta, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Proceedings of the 18th Annual International Conference on Intelligent Sysmtes for Molecular Biology (ISMB2010)
    • Place of Presentation
      Boston
    • Year and Date
      2010-07-11
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] A bootstrapping method of S-system model for estimating timeline gene regulatory networks2010

    • Author(s)
      Tomoyoshi Nakayama, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Annual Conference of the Japanese Society for Bioinformatics
    • Place of Presentation
      福岡
    • Year and Date
      2010-12-13
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] An Improved RNA-Seq analysis method for Isoform prediction by Iterative Mapping2010

    • Author(s)
      Ohno T, …, Takenaka Y., et.al
    • Organizer
      International Conference on Genome Informatics
    • Place of Presentation
      中国・杭州
    • Year and Date
      2010-12-16
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] Revealing regulatory relationships of crosstalk with multiple time-series gene expression profiles2010

    • Author(s)
      Kiyoshi Yoshizawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Proceedings of the 2010 Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)
    • Place of Presentation
      Fukuoka
    • Year and Date
      2010-12-13
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] A Method for Analyzing Gene Expression Profiles based on the Underlying Structures2009

    • Author(s)
      Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Proceedings of 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB2009)
    • Place of Presentation
      Stockholm, Sweden
    • Year and Date
      2009-06-29
    • Data Source
      KAKENHI-PROJECT-19710166
  • [Presentation] Architecture of an Efficient Data Transfer System and Manager for Genome-wide Analysis Workflows2008

    • Author(s)
      J. Seo, Y. Kido, S. Seno, Y. Takenaka, H. Matsuda
    • Organizer
      3rd MEI International Symposium
    • Place of Presentation
      サンフランシスコ、アメリカ
    • Year and Date
      2008-12-02
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] Tissue specificity measured by differences in information content between target tissue and whole tissue2008

    • Author(s)
      Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Proceedings of 16th International Conference on Intelligent Systems for Molecular Biology (ISMB2008)
    • Place of Presentation
      Toronto
    • Year and Date
      2008-07-21
    • Data Source
      KAKENHI-PROJECT-19710166
  • [Presentation] An Efficient Data Transfer, on Workflows for Genome-wide Analysis2008

    • Author(s)
      J. Seo, Y. Kido, S. Seno, Y. Takenaka, H. Matsuda
    • Organizer
      An Efficient Data Transfer, on Workflows for Genome-wide Analysis
    • Place of Presentation
      千里中央、大阪
    • Year and Date
      2008-12-16
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] A Method for Making a New Reference Set of PDB Entries for Retrieving Protein 3D Structures with Structural Annotations2008

    • Author(s)
      M. Hamada, Y. Kido, S. Seno, H. Daiyasu, Y. Takenaka. H. Matsuda
    • Organizer
      Annual Conf Japanese Society for Bioinformatics
    • Place of Presentation
      千里中央、大阪
    • Year and Date
      2008-12-15
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] Tissue specificity measured by differences in information content between target tissue and whole tissue2008

    • Author(s)
      Yoichi Takenaka
    • Organizer
      International Society for Computational Biology 2008
    • Place of Presentation
      Toronto, Canada
    • Year and Date
      2008-07-20
    • Data Source
      KAKENHI-PROJECT-19710166
  • [Presentation] A Data Transmission Method for Web Services in Bioinformatics Workflows2008

    • Author(s)
      J. Seo, S. Seno, Y. Takenaka, H. Matsuda
    • Organizer
      Intl Conf Intelligent Systems for Molecular Biology
    • Place of Presentation
      トロント、カナダ
    • Year and Date
      2008-07-21
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] A Method for Analysis of Tissue-Specific Transcriptional Control Using Distributions of Transcription Starting Sites2008

    • Author(s)
      Mitsuru Jikeya, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics (JSBi2008)
    • Place of Presentation
      Senri-Chuo
    • Year and Date
      2008-12-15
    • Data Source
      KAKENHI-PROJECT-19710166
  • [Presentation] A Method for Reducing Bounds of Compound Search by Dividing Structure Key2008

    • Author(s)
      T. Shimizu, Y. Kido, S. Seno, Y. Takenaka, H. Matsuda
    • Organizer
      Annual Conf Japanese Society for Bioinformatics
    • Place of Presentation
      千里中央、大阪
    • Year and Date
      2008-12-16
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] GO based Tissue Specific Functions of Mouse using Countable Gene Expression Profiles2007

    • Author(s)
      Yoichi Takenaka, Akiko Matsumoto, Hideo Matsuda
    • Organizer
      Genome Informatics
    • Place of Presentation
      Singapore
    • Year and Date
      2007-12-04
    • Data Source
      KAKENHI-PROJECT-19710166
  • [Presentation] GO based Tissue Specific Functions of Mouse using Countable Gene Ex pression Profiles2007

    • Author(s)
      Yoichi Takenaka
    • Organizer
      18th International Conference on Genome Infomatics
    • Place of Presentation
      シンガポール
    • Year and Date
      2007-12-04
    • Data Source
      KAKENHI-PROJECT-19710166
  • [Presentation] A Method for Retrieving Functionally Similar Bioinformatics Workflows2007

    • Author(s)
      J., Seo・S., Seno・Y., Takenaka・H., Matsuda
    • Organizer
      Annual Conference of Japanese Society for Bioinformatics
    • Place of Presentation
      東京,日本科学未来館
    • Year and Date
      2007-12-17
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] ゲノムマッピング: Burrows-Wheeler transformの次のアルゴリズム

    • Author(s)
      竹中要一
    • Organizer
      NGS現場の会 第二回研究会
    • Place of Presentation
      大阪
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] 都道府県に共通する例規の自動抽出

    • Author(s)
      竹中要一、若尾岳志
    • Organizer
      言語処理学会第20回年次大会
    • Place of Presentation
      北海道大学
    • Data Source
      KAKENHI-PROJECT-21500253
  • [Presentation] All the 1+3n one-mismatch sequences of n-mer DNA are involved in 22.2+0.00879n strings of Perfect Linear Code words on DNA

    • Author(s)
      Yoichi Takenaka
    • Organizer
      International Conference on Intelligent Systems for Molecular Biology (ISMB2012)
    • Place of Presentation
      CA USA
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] Chronological analysis of regulatory strength on gene regulatory networks

    • Author(s)
      Yoichi Takenaka, Shigeto Seno and Hideo Matsuda
    • Organizer
      ECCB 2014
    • Place of Presentation
      Boston
    • Year and Date
      2014-07-07 – 2014-07-10
    • Data Source
      KAKENHI-PROJECT-24650155
  • [Presentation] ゲノムマッピング: Burrows-Wheeler transformの次のアルゴリズム

    • Author(s)
      竹中要一
    • Organizer
      NGS現場の会
    • Place of Presentation
      大阪
    • Data Source
      KAKENHI-PROJECT-22680023
  • [Presentation] All the 1+3n one-mismatch sequences of n-mer DNA are involved in 22.2+0.00879n strings of Perfect Linear Code words on DNA

    • Author(s)
      Yoichi Takenaka
    • Organizer
      International Conference on Intelligent Systems for Molecular Biology (ISMB2012)
    • Place of Presentation
      CA USA
    • Data Source
      KAKENHI-PROJECT-22680023
  • 1.  MATSUDA Hideo (50183950)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 26 results
  • 2.  WATANABE Mikio (50294088)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 7 results
  • 3.  WAKAO Takeshi (50388328)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 6 results
  • 4.  Matsuura Yoshiharu (40104830)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 5.  佐野 智也 (30419428)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 6.  中村 誠 (50377438)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 7.  岩谷 良則
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 8.  瀬尾 茂人
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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