Mamitsuka Hiroshi 馬見塚拓

… Alternative Names

馬見塚拓マミツカヒロシ

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Researcher Number	00346107
Other IDs
Affiliation (Current)	2025: 京都大学, 化学研究所, 教授
Affiliation (based on the past Project Information) *help	2012 – 2025: 京都大学, 化学研究所, 教授 2003 – 2004: 京都大学, 化学研究所, 客員助教授
Review Section/Research Field	Principal Investigator Basic Section 61030:Intelligent informatics-related / Biological Sciences / Medium-sized Section 61:Human informatics and related fields / Basic Section 51030:Pathophysiologic neuroscience-related / Intelligent informatics / Intelligent informatics Except Principal Investigator Broad Section E / Intelligent informatics
Keywords	Principal Investigator 機械学習 / プロテオーム / 生体生命情報学 / バイオインフォマティクス / 知識発見とデータマイニング / アルゴリズム / 高次元機械学習 / データマイニング / 協調行列分解 / 行列分解 / ゲノム / 人工知能 / グラフマイニング … More Except Principal Investigator … More 機能性高分子 / TERP / ポリマーリサイクル / 自己修復性材料 / 有機テルル / 多分岐ポリマー / 修復性材料 / 絡み合い / 制御ラジカル重合 / デンドリマー / 超分岐ポリマー / 頻出パターンマイニング / ゲノム情報処理 / シーケンスマイニング / 知識発見とデータマイニング Less

グラフ深層学習による超高速物理シミュレーションの実現:システム生物学への展開Principal Investigator
- Principal Investigator
  
  馬見塚拓
- Project Period (FY)
  2025 – 2029
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 61:Human informatics and related fields
- Research Institution
  Kyoto University
Latent data structure estimation through integrating diverse dataPrincipal Investigator
- Principal Investigator
  
  馬見塚拓
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 61030:Intelligent informatics-related
- Research Institution
  Kyoto University
Development of new fabrication methods of polymer materials based on the structurally controlled hyperbranched polymers
- Principal Investigator
  
  山子茂
- Project Period (FY)
  2021 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Review Section
  
  Broad Section E
- Research Institution
  Kyoto University
Developing machine learning based bioinformatics to decipher hidden biology of depression symptomsPrincipal Investigator
- Principal Investigator
  
  馬見塚拓
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for JSPS Fellows
- Review Section
  
  Basic Section 51030:Pathophysiologic neuroscience-related
- Research Institution
  Kyoto University
Efficient estimation of data structure from multiple tensorsPrincipal Investigator
- Principal Investigator
  
  Mamitsuka Hiroshi
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 61030:Intelligent informatics-related
- Research Institution
  Kyoto University
Estimating the factor structure in multiple matricesPrincipal Investigator
- Principal Investigator
  
  Mamitsuka Hiroshi
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Intelligent informatics
- Research Institution
  Kyoto University
Analysis of Repetition Structure in Huge Sequences
- Principal Investigator
  
  Nakamura Atsuyoshi
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Intelligent informatics
- Research Institution
  Hokkaido University
Estimating data structure embedded in semi-structured dataPrincipal Investigator
- Principal Investigator
  
  Mamitsuka Hiroshi
- Project Period (FY)
  2012 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Intelligent informatics
- Research Institution
  Kyoto University
生体内化合物の効率的な比較、探索、発見アルゴリズムの開発Principal Investigator
- Principal Investigator
  
  馬見塚拓
- Project Period (FY)
  2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University
生体高分子と結合する低分子化合物の効率的な比較、探索、発見アルゴリズムの開発Principal Investigator
- Principal Investigator
  
  馬見塚拓
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University

[Book] Machine Learning for Marketing2019
- Author(s)
  Hiroshi Mamitsuka
- Total Pages
  237
- Publisher
  Global Data Science Publishing
- ISBN
  9784991044526
- Data Source
  KAKENHI-PROJECT-16H02868
[Book] Textbook of Machine Learning and Data Mining: with Bioinformatics Applications2018
- Author(s)
  Hiroshi Mamitsuka
- Total Pages
  388
- Publisher
  Global Data Science Publishing
- ISBN
  9784991044502
- Data Source
  KAKENHI-PROJECT-16H02868
[Book] Data Mining for Systems Biology2018
- Author(s)
  Hiroshi Mamitsuka
- Total Pages
  243
- Publisher
  Springer
- ISBN
  9781493985609
- Data Source
  KAKENHI-PROJECT-16H02868
[Book] Data Mining for Systems Biology: Methods and Protocols2013
- Author(s)
  Mamitsuka, H., DeLisi, C., and Kanehisa, M.
- Total Pages
  279
- Publisher
  Springer
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] CoPolDB: a copolymerization database for radical polymerization2024
- Author(s)
  Takahashi Kei-ichiro、Mamitsuka Hiroshi、Tosaka Masatoshi、Zhu Nanyi、Yamago Shigeru
- Journal Title
  
  Polymer Chemistry
  
  Volume: 15 Issue: 10 Pages: 965-971
- DOI
  10.1039/d3py01372c
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21H05027
[Journal Article] Graph Network-Based Simulation of Multicellular Dynamics Driven by Concentrated Polymer Brush-Modified Cellulose Nanofibers2024
- Author(s)
  Yoshikawa Chiaki、Nguyen Duc Anh、Nakaji-Hirabayashi Tadashi、Takigawa Ichigaku、Mamitsuka Hiroshi
- Journal Title
  
  ACS Biomaterials Science and Engineering
  
  Volume: 10 Issue: 4 Pages: 2165-2176
- DOI
  10.1021/acsbiomaterials.3c01888
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19KK0368, KAKENHI-PROJECT-21K12041, KAKENHI-PROJECT-21H05027, KAKENHI-PROJECT-23K23401, KAKENHI-PROJECT-23K25205
[Journal Article] Central-Smoothing Hypergraph Neural Networks for Predicting Drug?Drug Interactions2023
- Author(s)
  Nguyen Duc Anh、Nguyen Canh Hao、Mamitsuka Hiroshi
- Journal Title
  
  IEEE Transactions on Neural Networks and Learning Systems
  
  Volume: 0 Issue: 8 Pages: 1-6
- DOI
  10.1109/tnnls.2023.3261860
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22K12150, KAKENHI-PROJECT-19H04169
[Journal Article] DeepMHCI: an anchor position-aware deep interaction model for accurate MHC-I peptide binding affinity prediction2023
- Author(s)
  Qu Wei、You Ronghui、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Bioinformatics
  
  Volume: 39 Issue: 9
- DOI
  10.1093/bioinformatics/btad551
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24901, KAKENHI-PROJECT-21H05027
[Journal Article] Multiplicative Sparse Tensor Factorization for Multi-View Multi-Task Learning2023
- Author(s)
  Wang Xinyi、Sun Lu、Nguyen Canh Hao、Mamitsuka Hiroshi
- Journal Title
  
  Proceedings of the 26th European Conference on Artificial Intelligence (ECAI 2023)
  
  Volume: - Pages: 2560-2567
- DOI
  10.3233/faia230561
- ISBN
  9781643684369, 9781643684376
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24901, KAKENHI-PROJECT-21H05027
[Journal Article] DIVERSE: Bayesian Data IntegratiVE Learning for Precise Drug ResponSE Prediction2022
- Author(s)
  Paltun Betul Guvenc、Kaski Samuel、Mamitsuka Hiroshi
- Journal Title
  
  IEEE/ACM Transactions on Computational Biology and Bioinformatics
  
  Volume: 19 Issue: 4 Pages: 2197-2207
- DOI
  10.1109/tcbb.2021.3065535
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] SPARSE: a sparse hypergraph neural network for learning multiple types of latent combinations to accurately predict drug?drug interactions2022
- Author(s)
  Nguyen Duc Anh、Nguyen Canh Hao、Petschner Peter、Mamitsuka Hiroshi
- Journal Title
  
  Bioinformatics
  
  Volume: 38 Issue: Supplement_1 Pages: i333-i341
- DOI
  10.1093/bioinformatics/btac250
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K12150, KAKENHI-PROJECT-21H05027, KAKENHI-PROJECT-20F20809, KAKENHI-PROJECT-19H04169
[Journal Article] DeepMHCII: a novel binding core-aware deep interaction model for accurate MHC-II peptide binding affinity prediction2022
- Author(s)
  You Ronghui、Qu Wei、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Bioinformatics
  
  Volume: 38 Issue: Supplement_1 Pages: i220-i228
- DOI
  10.1093/bioinformatics/btac225
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21H05027, KAKENHI-PROJECT-19H04169
[Journal Article] Sc2Mol: a scaffold-based two-step molecule generator with variational autoencoder and transformer2022
- Author(s)
  Liao Zhirui、Xie Lei、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Bioinformatics
  
  Volume: 39 Issue: 1
- DOI
  10.1093/bioinformatics/btac814
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169, KAKENHI-PROJECT-23K24901, KAKENHI-PROJECT-21H05027
[Journal Article] Machine learning approaches for drug combination therapies2021
- Author(s)
  G?ven??Paltun Bet?l、Kaski Samuel、Mamitsuka Hiroshi
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 22 Issue: 6
- DOI
  10.1093/bib/bbab293
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] Reshaped tensor nuclear norms for higher order tensor completion2021
- Author(s)
  Wimalawarne Kishan、Mamitsuka Hiroshi
- Journal Title
  
  Machine Learning
  
  Volume: 110 Issue: 3 Pages: 507-531
- DOI
  10.1007/s10994-020-05927-y
- NAID
  120007002690
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean2021
- Author(s)
  Kaneko Hiroto、Blanc-Mathieu Romain、Endo Hisashi、Chaffron Samuel、Delmont Tom O.、Gaia Morgan、Henry Nicolas、Hern?ndez-Vel?zquez Rodrigo、Nguyen Canh Hao、Mamitsuka Hiroshi、Forterre Patrick、Jaillon Olivier、de Vargas Colomban、Sullivan Matthew B.、Suttle Curtis A.、Guidi Lionel、Ogata Hiroyuki
- Journal Title
  
  iScience
  
  Volume: 24 Issue: 1 Pages: 102002-102002
- DOI
  10.1016/j.isci.2020.102002
- NAID
  120006951684
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K15895, KAKENHI-INTERNATIONAL-16K21723, KAKENHI-PLANNED-16H06437, KAKENHI-ORGANIZER-16H06429, KAKENHI-PROJECT-19H05667, KAKENHI-PROJECT-18H02279, KAKENHI-PROJECT-19H04169
[Journal Article] Crop loss identification at field parcel scale using satellite remote sensing and machine learning2021
- Author(s)
  Hiremath Santosh、Wittke Samantha、Palosuo Taru、Kaivosoja Jere、Tao Fulu、Proll Maximilian、Puttonen Eetu、Peltonen-Sainio Pirjo、Marttinen Pekka、Mamitsuka Hiroshi
- Journal Title
  
  PLOS ONE
  
  Volume: 16 Issue: 12 Pages: e0251952-e0251952
- DOI
  10.1371/journal.pone.0251952
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] HPODNets: deep graph convolutional networks for predicting human protein?phenotype associations2021
- Author(s)
  Liu Lizhi、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Bioinformatics
  
  Volume: 38 Issue: 3 Pages: 799-808
- DOI
  10.1093/bioinformatics/btab729
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21H05027, KAKENHI-PROJECT-19H04169
[Journal Article] Drug3D-DTI: Improved Drug-target Interaction Prediction by Incorporating Spatial Information of Small Molecules2021
- Author(s)
  Liao Zhirui、Huang Xiaodi、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2021)
  
  Volume: - Pages: 340-347
- DOI
  10.1109/bibm52615.2021.9669707
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] XGSEA: CROSS-species gene set enrichment analysis via domain adaptation2021
- Author(s)
  Cai Menglan、Hao Nguyen Canh、Mamitsuka Hiroshi、Li Limin
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 22 Issue: 5
- DOI
  10.1093/bib/bbaa406
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction2021
- Author(s)
  You Ronghui、Yao Shuwei、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Bioinformatics
  
  Volume: 37 Issue: Supplement_1 Pages: i262-i271
- DOI
  10.1093/bioinformatics/btab270
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] Learning subtree pattern importance for Weisfeiler-Lehman based graph kernels2021
- Author(s)
  Nguyen Dai Hai、Nguyen Canh Hao、Mamitsuka Hiroshi
- Journal Title
  
  Machine Learning
  
  Volume: 110 Issue: 7 Pages: 1587-1607
- DOI
  10.1007/s10994-021-05991-y
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K11434, KAKENHI-PROJECT-19H04169
[Journal Article] Machine Learning for Metabolic Identification2021
- Author(s)
  Nguyen Dai Hai、Nguyen Canh Hao、Mamitsuka Hiroshi
- Journal Title
  
  Creative Complex Systems
  
  Volume: - Pages: 329-350
- DOI
  10.1007/978-981-16-4457-3_20
- ISBN
  9789811644566, 9789811644573
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] HPOFiller: identifying missing protein?phenotype associations by graph convolutional network2021
- Author(s)
  Liu Lizhi、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Bioinformatics
  
  Volume: 37 Issue: 19 Pages: 3328-3336
- DOI
  10.1093/bioinformatics/btab224
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] Learning on Hypergraphs with Sparsity2020
- Author(s)
  Nguyen Hao Canh、Mamitsuka Hiroshi
- Journal Title
  
  IEEE Transactions on Pattern Analysis and Machine Intelligence
  
  Volume: 1 Pages: 1-1
- DOI
  10.1109/tpami.2020.2974746
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K11434, KAKENHI-PROJECT-19H04169
[Journal Article] Scaled Coupled Norms and Coupled Higher-Order Tensor Completion2020
- Author(s)
  Wimalawarne Kishan、Yamada Makoto、Mamitsuka Hiroshi
- Journal Title
  
  Neural Computation
  
  Volume: 32 Issue: 2 Pages: 447-484
- DOI
  10.1162/neco_a_01254
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H02868, KAKENHI-PROJECT-19H04169
[Journal Article] Scalable Probabilistic Matrix Factorization with Graph-Based Priors2020
- Author(s)
  Strahl Jonathan、Peltonen Jaakko、Mamitsuka Hirsohi、Kaski Samuel
- Journal Title
  
  Proceedings of the AAAI Conference on Artificial Intelligence
  
  Volume: 34 Issue: 04 Pages: 5851-5858
- DOI
  10.1609/aaai.v34i04.6043
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] HPOLabeler: improving prediction of human protein?phenotype associations by learning to rank2020
- Author(s)
  Liu Lizhi、Huang Xiaodi、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Bioinformatics
  
  Volume: 36 Issue: 14 Pages: 4180-4188
- DOI
  10.1093/bioinformatics/btaa284
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] BERTMeSH: deep contextual representation learning for large-scale high-performance MeSH indexing with full text2020
- Author(s)
  You Ronghui、Liu Yuxuan、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Bioinformatics
  
  Volume: 37 Issue: 5 Pages: 684-692
- DOI
  10.1093/bioinformatics/btaa837
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] Efficiently Enumerating Substrings with Statistically Significant Frequencies of Locally Optimal Occurrences in Gigantic String2020
- Author(s)
  Nakamura Atsuyoshi、Takigawa Ichigaku、Mamitsuka Hiroshi
- Journal Title
  
  Proceedings of the AAAI Conference on Artificial Intelligence
  
  Volume: 34 Issue: 04 Pages: 5240-5247
- DOI
  10.1609/aaai.v34i04.5969
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] Scalable Probabilistic Matrix Factorization with Graph-Based Priors.2020
- Author(s)
  Strahl, J., Peltonen, J., Mamitsuka, H. and Kaski, S.
- Journal Title
  
  Proceedings of the 34th AAAI Conference on Artificial Intelligence (AAAI 2020)
  
  Volume: -
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] AttentionXML: Label Tree-based Attention-Aware Deep Model for High-Performance Extreme Multi-Label Text Classification.2019
- Author(s)
  You, R., Dai, S., Zhang, Z., Mamitsuka, H. and Zhu, S.
- Journal Title
  
  Proceedings of the 33rd Annual Conference on Neural Information Processing Systems (NeurIPS 2019)
  
  Volume: - Pages: 5820-5830
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] Modelling G×E with historical weather information improves genomic prediction in new environments2019
- Author(s)
  Gillberg Jussi、Marttinen Pekka、Mamitsuka Hiroshi、Kaski Samuel
- Journal Title
  
  Bioinformatics
  
  Volume: 35 Issue: 20 Pages: 4045-4052
- DOI
  10.1093/bioinformatics/btz197
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] ADAPTIVE: leArning DAta-dePendenT, concIse molecular VEctors for fast, accurate metabolite identification from tandem mass spectra2019
- Author(s)
  Dai Hai Nguyen, Canh Hao Nguyen, Hiroshi Mamitsuka
- Journal Title
  
  Bioinformatics
  
  Volume: 35 Issue: 14 Pages: 164-172
- DOI
  10.1093/bioinformatics/btz319
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19J14714, KAKENHI-PROJECT-19H04169
[Journal Article] NetGO: improving large-scale protein function prediction with massive network information2019
- Author(s)
  You Ronghui、Yao Shuwei、Xiong Yi、Huang Xiaodi、Sun Fengzhu、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 47 Issue: W1 Pages: W379-W387
- DOI
  10.1093/nar/gkz388
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] A survey on adverse drug reaction studies: data, tasks and machine learning methods2019
- Author(s)
  Nguyen Duc Anh、Nguyen Canh Hao、Mamitsuka Hiroshi
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 1 Issue: 1 Pages: 1-1
- DOI
  10.1093/bib/bbz140
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K11434, KAKENHI-PROJECT-19H04169
[Journal Article] Fast and Robust Multi-View Multi-Task Learning via Group Sparsity2019
- Author(s)
  Sun Lu、Nguyen Canh Hao、Mamitsuka Hiroshi
- Journal Title
  
  Proceedings of the 28th International Joint Conference on Artificial Intelligence (IJCAI 2019)
  
  Volume: - Pages: 3499-3505
- DOI
  10.24963/ijcai.2019/485
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H02868, KAKENHI-PROJECT-19H04169
[Journal Article] HPOAnnotator: improving large-scale prediction of HPO annotations by low-rank approximation with HPO semantic similarities and multiple PPI networks2019
- Author(s)
  Gao Junning、Liu Lizhi、Yao Shuwei、Huang Xiaodi、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  BMC Medical Genomics
  
  Volume: 12 Issue: S10 Pages: 187-187
- DOI
  10.1186/s12920-019-0625-1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] Multiplicative Sparse Feature Decomposition for Efficient Multi-View Multi-Task Learning2019
- Author(s)
  Sun Lu、Nguyen Canh Hao、Mamitsuka Hiroshi
- Journal Title
  
  Proceedings of the 28th International Joint Conference on Artificial Intelligence (IJCAI 2019)
  
  Volume: - Pages: 3506-3512
- DOI
  10.24963/ijcai.2019/486
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H02868, KAKENHI-PROJECT-19H04169
[Journal Article] FullMeSH: improving large-scale MeSH indexing with full text2019
- Author(s)
  Dai Suyang、You Ronghui、Lu Zhiyong、Huang Xiaodi、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Bioinformatics
  
  Volume: 36 Issue: 5 Pages: 1533-1541
- DOI
  10.1093/bioinformatics/btz756
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04169
[Journal Article] Improving drug response prediction by integrating multiple data sources: matrix factorization, kernel and network-based approaches2019
- Author(s)
  Guvenq Paltun Betel、Mamitsuka Hiroshi、Kaski Samuel
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: - Issue: 1 Pages: 346-359
- DOI
  10.1093/bib/bbz153
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868, KAKENHI-PROJECT-19H04169
[Journal Article] GOLabeler: improving sequence-based large-scale protein function prediction by learning to rank2018
- Author(s)
  You Ronghui、Zhang Zihan、Xiong Yi、Sun Fengzhu、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Bioinformatics
  
  Volume: 34 Issue: 14 Pages: 2465-2473
- DOI
  10.1093/bioinformatics/bty130
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] MeSHLabeler and DeepMeSH: Recent Progress in Large-Scale MeSH Indexing2018
- Author(s)
  Peng Shengwen、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Methods in Molecular Biology
  
  Volume: 1807 Pages: 203-209
- DOI
  10.1007/978-1-4939-8561-6_15
- NAID
  120006552926
- ISBN
  9781493985609, 9781493985616
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] SiBIC: A Tool for Generating a Network of Biclusters Captured by Maximal Frequent Itemset Mining2018
- Author(s)
  Takahashi Kei-ichiro、duVerle David A.、Yotsukura Sohiya、Takigawa Ichigaku、Mamitsuka Hiroshi
- Journal Title
  
  Methods in Molecular Biology
  
  Volume: 1807 Pages: 95-111
- DOI
  10.1007/978-1-4939-8561-6_8
- NAID
  120006552927
- ISBN
  9781493985609, 9781493985616
- Open Access
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] SIMPLE: Sparse Interaction Model over Peaks of moLEcules for fast, interpretable metabolite identification from tandem mass spectra2018
- Author(s)
  Nguyen Dai Hai、Nguyen Canh Hao、Mamitsuka Hiroshi
- Journal Title
  
  Bioinformatics
  
  Volume: 34 Issue: 13 Pages: i323-i332
- DOI
  10.1093/bioinformatics/bty252
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K11434, KAKENHI-PROJECT-16H02868
[Journal Article] Efficient Convex Completion of Coupled Tensors using Coupled Nuclear Norms.2018
- Author(s)
  Wimalawarme, K. and Mamitsuka, H.
- Journal Title
  
  Proceedings of the Thirty-Second Annual Conference on Neural Information Processing Systems (NeurIPS 2018)
  
  Volume: - Pages: 6902-6910
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] Factor Analysis on a Graph2018
- Author(s)
  Karasuyama, M. and Mamitsuka, H.
- Journal Title
  
  Proceedings of the 21st International Conference on Artificial Intelligence and Statistics (AISTATS 2018) (JMLR Workshop and Conference Proceedings (PMLR))
  
  Volume: 84 Pages: 1117-1126
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] DrugE-Rank: Predicting Drug-Target Interactions by Learning to Rank2018
- Author(s)
  Deng Jieyao、Yuan Qingjun、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Methods in Molecular Biology
  
  Volume: 1807 Pages: 195-202
- DOI
  10.1007/978-1-4939-8561-6_14
- NAID
  120006552925
- ISBN
  9781493985609, 9781493985616
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] Efficient Convex Completion of Coupled Tensors using Coupled Nuclear Norms2018
- Author(s)
  Wimalawarne Kishan, Mamitsuka Hiroshi
- Journal Title
  
  Proceedings of the Thirty-Second Annual Conference on Neural Information Processing Systems (NeurIPS 2018)
  
  Volume: - Pages: 6902-6910
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] Factor Analysis on a Graph.2018
- Author(s)
  Karasuyama, M. and Mamitsuka, H.
- Journal Title
  
  Proceedings of the 21st International Conference on Artificial Intelligence and Statistics (AISTATS 2018)
  
  Volume: - Pages: 1117-1126
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data2018
- Author(s)
  Yamada Makoto、Tang Jiliang、Lugo-Martinez Jose、Hodzic Ermin、Shrestha Raunak、Ouyang Hua、Radivojac Predrag、Sahinalp Cenk、Menczer Filippo、Chang Yi、Saha Avishek、Mamitsuka Hiroshi、Yin Dawei
- Journal Title
  
  IEEE Transactions on Knowledge and Data Engineering
  
  Volume: n/a Issue: 7 Pages: 1-1
- DOI
  10.1109/tkde.2018.2789451
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K16114, KAKENHI-PROJECT-16H02868
[Journal Article] AiProAnnotator: Low-rank Approximation with network side information for high-performance, large-scale human Protein abnormality Annotator2018
- Author(s)
  Gao Junning、Yao Shuwei、Mamitsuka Hiroshi、Zhu Shanfeng
- Journal Title
  
  Proceedings of the 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2018)
  
  Volume: - Pages: 13-20
- DOI
  10.1109/bibm.2018.8621517
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] Convex Coupled Matrix and Tensor Completion2018
- Author(s)
  Wimalawarne Kishan、Yamada Makoto、Mamitsuka Hiroshi
- Journal Title
  
  Neural Computation
  
  Volume: 30 Issue: 11 Pages: 3095-3127
- DOI
  10.1162/neco_a_01123
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] Exploring Phenotype Patterns of Breast Cancer within Somatic Mutations: a Modicum in the Intrinsic Code2017
- Author(s)
  Yotsukura Sohiya, Karasuyama Masayuki, Takigawa Ichigaku, and Mamitsuka Hiroshi
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 18 Pages: bbw040-bbw040
- DOI
  10.1093/bib/bbw040
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-14J00381, KAKENHI-PROJECT-16H02868
[Journal Article] Adaptive Edge Weighting for Graph-Based Learning Algorithms2017
- Author(s)
  M. Karasuyama, and H. Mamitsuka,
- Journal Title
  
  Machine Learning
  
  Volume: 106 Issue: 2 Pages: 307-335
- DOI
  10.1007/s10994-016-5607-3
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26730120, KAKENHI-PROJECT-16H02868
[Journal Article] Generalized sparse learning of linear models over the complete subgraph feature set2017
- Author(s)
  Takigawa I, Mamitsuka H
- Journal Title
  
  IEEE Transactions on Pattern Analysis and Machine Intelligence
  
  Volume: 36(3) Issue: 3 Pages: 617-624
- DOI
  10.1109/tpami.2016.2567399
- NAID
  120006382284
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26330242, KAKENHI-PROJECT-16H02868
[Journal Article] Convex Factorization Machine for Toxicogenomics Prediction2017
- Author(s)
  Yamada Makoto、Lian Wenzhao、Goyal Amit、Chen Jianhui、Wimalawarne Kishan、Khan Suleiman A.、Kaski Samuel、Mamitsuka Hiroshi、Chang Yi
- Journal Title
  
  Proceedings of the Twenty-third ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD 2017)
  
  Volume: - Pages: 1215-1224
- DOI
  10.1145/3097983.3098103
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Journal Article] Mining approximate patterns with frequent locally optimal occurrences2016
- Author(s)
  Nakamura A, Takigawa I, Tosaka H, Kudo M, Mamitsuka H
- Journal Title
  
  Discrete Applied Mathematics
  
  Volume: 200 Pages: 123-152
- DOI
  10.1016/j.dam.2015.07.002
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26330242, KAKENHI-PUBLICLY-26120503, KAKENHI-PROJECT-24300054, KAKENHI-PROJECT-25280079, KAKENHI-PROJECT-15H02719
[Journal Article] Current Status and Prospects of Computational Resources for Natural Product Dereplication: A Review.2016
- Author(s)
  Mohamed, A., Nguyen, C. H. and Mamitsuka, H.
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 17 Issue: 2 Pages: 309-321
- DOI
  10.1093/bib/bbv042
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] Computational Recognition for Long Non-coding RNA (lncRNA): Software and Databases.2016
- Author(s)
  Yotsukura, S., duVerle D., Hancock, T., Natsume-Kitatani, Y. and Mamitsuka, H.
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: unassigned Issue: 1 Pages: 9-27
- DOI
  10.1093/bib/bbv114
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-14J00381, KAKENHI-PROJECT-16H02868
[Journal Article] MeSHSim: An R/Bioconductor Package for Measuring Semantic Similarity over MeSH Headings and MEDLINE Documents2015
- Author(s)
  Zhou, J., Shui, Y., Peng, S., Li, X., Mamitsuka, H. and Zhu, S.
- Journal Title
  
  Journal of Bioinformatics and Computational Biology
  
  Volume: 13 Issue: 06 Pages: 1542002-1542002
- DOI
  10.1142/s0219720015420020
- NAID
  120006654075
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] Non-negative Matrix Factorization with Auxiliary Information on Overlapping Groups2015
- Author(s)
  Motoki Shiga, Hiroshi Mamitsuka
- Journal Title
  
  IEEE Transactions on Knowledge and Data Engineering
  
  Volume: 27 Issue: 6 Pages: 1615-1628
- DOI
  10.1109/tkde.2014.2373361
- NAID
  120005663300
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25870322, KAKENHI-PROJECT-24300054
[Journal Article] BMExpert: Mining MEDLINE for Finding Experts in Biomedical Domains Based on Language Model.2015
- Author(s)
  Wang, B., Chen, X., Mamitsuka, H. and Zhu, S.
- Journal Title
  
  IEEE/ACM Transactions on Computational Biology and Bioinformatics
  
  Volume: 12 Issue: 6 Pages: 1286-1294
- DOI
  10.1109/tcbb.2015.2430338
- NAID
  120006654074
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] MeSHLabeler: Improving the Accuracy of Large-scale MeSH indexing by Integrating Diverse Evidence.2015
- Author(s)
  Liu, K., Peng, S., Wu, J., Zhai, C., Mamitsuka H. and Zhu S.
- Journal Title
  
  Bioinformatics
  
  Volume: 31 Issue: 12 Pages: i339-i347
- DOI
  10.1093/bioinformatics/btv237
- NAID
  120005980853
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] Evaluation of Serum-based Cancer Biomarkers: A Brief Review from a Clinical and Computational Viewpoint2015
- Author(s)
  Yotsukura, S. and Mamitsuka, H.
- Journal Title
  
  Critical Reviews in Oncology/Hematology
  
  Volume: 93 Issue: 2 Pages: 103-115
- DOI
  10.1016/j.critrevonc.2014.10.002
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-14J00381, KAKENHI-PROJECT-24300054
[Journal Article] NetPathMiner:R/Bioconductor Package for Network Path Mining through Gene Expression2014
- Author(s)
  Mohamed, A., Hancock, T., Nguyen, C. H. and Mamitsuka, H.
- Journal Title
  
  Bioinformatics
  
  Volume: 30 Issue: 21 Pages: 3139-3141
- DOI
  10.1093/bioinformatics/btu501
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] Selecting Graph Cut Solutions via Global Graph Similarity2014
- Author(s)
  Nguyen, C. H., Wicker, N. and Mamitsuka, H.
- Journal Title
  
  IEEE Transactions on Neural Networks and Learning Systems
  
  Volume: 25 Issue: 7 Pages: 1407-1412
- DOI
  10.1109/tnnls.2013.2292975
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] Detecting Differentially Coexpressed Genes from Labeled Expression Data:A Brief Review2014
- Author(s)
  Kayano, M., Shiga, M. and Mamitsuka, H.
- Journal Title
  
  IEEE/ACM Transactions on Computational Biology and Bioinformatics
  
  Volume: 11 Issue: 1 Pages: 154-167
- DOI
  10.1109/tcbb.2013.2297921
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24300054, KAKENHI-PROJECT-24700290
[Journal Article] SIBIC : A Web Server for Generating Gene Set Seiworks Based on Blelusters Obtained by Maximal Frequent Itemsel Mining2013
- Author(s)
  Keiichio Takahashi. Ichigaku Takigawa and Hiroshi Mamitsuka
- Journal Title
  
  PLOS ONE
  
  Volume: 8(12) Issue: 12 Pages: e82890-e82890
- DOI
  10.1371/journal.pone.0082890
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J04552, KAKENHI-PROJECT-23710233, KAKENHI-PROJECT-24300054
[Journal Article] A New Dissimilarity Measure for Comparing Labeled Graphs2013
- Author(s)
  Wicker, N., Nguyen, C. H. and Mamitsuka, H.
- Journal Title
  
  Linear Algebra and its Applications
  
  Volume: 438 Issue: 5 Pages: 2331-2338
- DOI
  10.1016/j.laa.2012.10.021
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] Efficient Semi-supervised MEDLINE Document Clustering with MeSH Semantic and Global Content Constraints2013
- Author(s)
  Gu, J., Feng, W., Zeng, J., Mamitsuka, H. and Zhu, S.
- Journal Title
  
  IEEE Transactions on Cybernetics
  
  Volume: 43 Issue: 4 Pages: 1265-1276
- DOI
  10.1109/tsmcb.2012.2227998
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] Multiple Graph Label Propagation by Sparse Integration2013
- Author(s)
  Karasuyama, M. and Mamitsuka, H.
- Journal Title
  
  IEEE Transactions on Neural Networks and Learning Systems
  
  Volume: 24 Issue: 12 Pages: 1999-2012
- DOI
  10.1109/tnnls.2013.2271327
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24300054, KAKENHI-PROJECT-24800036
[Journal Article] An In Silico Model for Interpreting Polypharmacological Relationships in Drug-Target Networks2013
- Author(s)
  Ichigaku Takigawa, Koji Tsuda, Hiroshi Mamitsuka
- Journal Title
  
  Methods in Molecular Biology (In Silico Models for Drug Discovery)
  
  Volume: 993 Pages: 67-80
- DOI
  10.1007/978-1-62703-342-8_5
- ISBN
  9781627033411, 9781627033428
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23710233, KAKENHI-PROJECT-24300054
[Journal Article] Fast Algorithms for Finding a Minimum Repetition Representation of Strings and Trees2013
- Author(s)
  Nakamura, A., Saito, T., Takigawa, I., Kudo, M. and Mamitsuka, H.
- Journal Title
  
  Discrete Applied Mathematics
  
  Volume: 161 Issue: 10-11 Pages: 1556-1575
- DOI
  10.1016/j.dam.2012.12.013
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] Graph mining: procedure, application to drug discovery and recent advances2013
- Author(s)
  Ichigaku Takigawa, Hiroshi Mamitsuka
- Journal Title
  
  Drug Discovery Today
  
  Volume: 18: 1-2 Issue: 1-2 Pages: 50-57
- DOI
  10.1016/j.drudis.2012.07.016
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23710233, KAKENHI-PROJECT-24300054
[Journal Article] Identifying Pathways of Coordinated Gene Expression2013
- Author(s)
  Timothy Hancock, Ichigaku Takigawa, Hiroshi Mamitsuka
- Journal Title
  
  Methods in Molecular Biology (Data Mining for Systems Biology)
  
  Volume: 939 Pages: 69-85
- DOI
  10.1007/978-1-62703-107-3_7
- ISBN
  9781627031066, 9781627031073
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23710233, KAKENHI-PROJECT-24300054
[Journal Article] Similarity-based machine learning methods for predicting drug.target interactions : a brief review2013
- Author(s)
  Ding H, Takigawa I, Mamitsuka H, Zhu S
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: (印刷中・先行オンライン出版済) Issue: 5 Pages: 737-747
- DOI
  10.1093/bib/bbt056
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23710233, KAKENHI-PROJECT-24300054
[Journal Article] Latent Feature Kernels for Link Prediction on Sparse Graphs2012
- Author(s)
  Nguhen, C. H. and Mamitsuka, H.
- Journal Title
  
  LEEE Transactions on Neural Networks and Learning Systems
  
  Volume: 23 Issue: 11 Pages: 1793-1804
- DOI
  10.1109/tnnls.2012.2215337
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24300054
[Journal Article] A Hierarchical Mixture of Markov Models for Finding Biologically Active Paths using Gene Expression and Protein Classes2004
- Author(s)
  Mamitsuka, H., Okuno, Y.
- Journal Title
  
  Proceedings of the IEEE Computational Systems Bioinforimatics Conference (CSB 2004)
  
  Pages: 341-352
- Data Source
  KAKENHI-PROJECT-16014211
[Presentation] ラジカル共重合におけるモノマー反応性比の機械学習を用いた理解と予測2022
- Author(s)
  登阪雅聡, 朱南屹, 山子茂, 馬見塚拓
- Organizer
  第71回高分子年次大会
- Data Source
  KAKENHI-PROJECT-21H05027
[Presentation] Scalable Probabilistic Matrix Factorization with Graph-Based Priors.2020
- Author(s)
  Strahl, J., Peltonen, J., Mamitsuka, H. and Kaski, S.
- Organizer
  34th AAAI Conference on Artificial Intelligence (AAAI 2020)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Presentation] Multiplicative Sparse Feature Decomposition for Efficient Multi-View Multi-Task Learning.2019
- Author(s)
  Sun Lu、Nguyen Canh Hao、Mamitsuka Hiroshi
- Organizer
  28th International Joint Conference on Artificial Intelligence (IJCAI 2019)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Presentation] Fast and Robust Multi-View Multi-Task Learning via Group Sparsity2019
- Author(s)
  Sun Lu、Nguyen Canh Hao、Mamitsuka Hiroshi
- Organizer
  28th International Joint Conference on Artificial Intelligence (IJCAI 2019)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Presentation] Efficient Convex Completion of Coupled Tensors using Coupled Nuclear Norms.2018
- Author(s)
  Wimalawarme, K. and Mamitsuka, H.
- Organizer
  Thirty-Second Annual Conference on Neural Information Processing Systems (NeurIPS 2018)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Presentation] AiProAnnotator: Low-rank Approximation with network side information for high-performance, large-scale human Protein abnormality Annotator2018
- Author(s)
  Gao Junning、Yao Shuwei、Mamitsuka Hiroshi、Zhu Shanfeng
- Organizer
  2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2018)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Presentation] Factor Analysis on a Graph.2018
- Author(s)
  Karasuyama, M. and Mamitsuka, H.
- Organizer
  Proceedings of the 21st International Conference on Artificial Intelligence and Statistics (AISTATS 2018)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Presentation] Factor Analysis on a Graph2018
- Author(s)
  Karasuyama, M. and Mamitsuka, H.
- Organizer
  21st International Conference on Artificial Intelligence and Statistics (AISTATS 2018)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Presentation] Efficient Convex Completion of Coupled Tensors using Coupled Nuclear Norms2018
- Author(s)
  Wimalawarne Kishan, Mamitsuka Hiroshi
- Organizer
  Thirty-Second Annual Conference on Neural Information Processing Systems (NeurIPS 2018)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02868
[Presentation] MeSHLabeler: Improving the Accuracy of Large-scale MeSH indexing by Integrating Diverse Evidence2015
- Author(s)
  Liu, K., Peng, S., Wu, J., Zhai, C., Mamitsuka H. and Zhu S.
- Organizer
  23rd International Conference on Intelligent Systems for Molecular Biology (ISMB/ECCB 2015)
- Place of Presentation
  Dublin, Ireland
- Year and Date
  2015-07-10
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Collaborative matrix factorization for predicting drug-target interactions2015
- Author(s)
  Mamitsuka, H.
- Organizer
  CIM Workshop on Machine Learning
- Place of Presentation
  Uppsala, Sweden
- Year and Date
  2015-10-08
- Invited
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Instance-wise Weighted Nonnegative Matrix Factorization for Aggregating Partitions with Locally Reliable Clusters.2015
- Author(s)
  Zheng, X., Zhu, S., Gao, J. and Mamitsuka, H.
- Organizer
  24th International Joint Conference on Artificial Intelligence (IJCAI 2015)
- Place of Presentation
  Buenos Aires, Argentina
- Year and Date
  2015-07-25
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Collaborative Matrix Factorization for Predicting Drug-Target Interactions2014
- Author(s)
  Mamitsuka, H.
- Organizer
  Trends in Machine Learning
- Place of Presentation
  Kyoto University, Japan
- Invited
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Mining Metabolic Pathways through Gene Expression2013
- Author(s)
  Mamitsuka, H.
- Organizer
  Kyoto University--Koc University Symposium ``New Frontiers in Health Sciences & Technologies''
- Place of Presentation
  Kyoto University, Japan
- Invited
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Manifold-based Similarity Adaptation for Label Propagation2013
- Author(s)
  Karasuyama, M. and Mamitsuka, H.
- Organizer
  Twenty-Seventh Annual Conference on Neural Information Processing Systems (NIPS 2013)
- Place of Presentation
  Lake Tahoe, NV, USA
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Variational Bayes Co-clustering with Auxiliary Information2013
- Author(s)
  Shiga, M. and Mamitsuka, H.
- Organizer
  4th MultiClust Workshop on Multiple Clusterings, Multi-view Data, and Multi-source Knowledge-driven Clustering (MultiClust 2013)
- Place of Presentation
  Chicago, IL, USA
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Machine Learning for Bioinformatics2013
- Author(s)
  Mamitsuka, H.
- Organizer
  FASEB Science and Research Conference, The Biology of Calpains in Health and Disease
- Place of Presentation
  Saxtons River, VT, USA
- Invited
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Collaborative Matrix Factorization with Multiple Similarities for Predicting Drug-Target Interactions2013
- Author(s)
  Zheng, X., Ding, H., Mamitsuka, H. and Zhu, S.
- Organizer
  Nineteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (KDD 2013)
- Place of Presentation
  Chicago, IL, USA
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Mining Significant Substructure Pairs from Drug-Target Network2013
- Author(s)
  馬見塚　拓
- Organizer
  日本バイオインフォマティクス学会第１７回創薬インフォマティクス研究会
- Place of Presentation
  産業技術総合研究所臨海副都心センター別館
- Invited
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Efficiently Detecting Switching Mechanisms in Gene Expression2013
- Author(s)
  Mamitsuka, H.
- Organizer
  23rd International Conference on Genome Informatics (GIW 2013)
- Place of Presentation
  Matrix, Biopolis, Singpore
- Invited
- Data Source
  KAKENHI-PROJECT-24300054
[Presentation] Learning kernel-based feature representation for gene essentiality prediction
- Author(s)
  Karasuyama, M. and Mamitsuka, H.
- Organizer
  DREAM Challenges and Cytoscape Workshops
- Place of Presentation
  San Diego, CA, USA
- Year and Date
  2014-11-09 – 2014-11-14
- Data Source
  KAKENHI-PROJECT-24300054

1. Takigawa Ichigaku (10374597)

# of Collaborated Projects: 2 results

# of Collaborated Products: 7 results
2. 山口敦子 (10346108)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. Hancock Timothy (80600709)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
4. Shiga Motoki (20437263)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
5. Tsuda Koji (90357517)

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# of Collaborated Products: 0 results
6. Kayano Mitsunori (20590095)

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# of Collaborated Products: 1 results
7. Nguyen Canh Hao (90626889)

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# of Collaborated Products: 10 results
8. Nakamura Atsuyoshi (50344487)

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9. KUDO Mineichi (60205101)

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10. KIDA Takuya (70343316)

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11. OKUBO Yoshiaki (40271639)

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12. 山子茂 (30222368)

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13. 遊佐真一 (00301432)

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14. 竹中幹人 (30222102)

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15. PETSCHNER PETER

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16. KARASUYAMA Masayuki

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
17. YOSHIKAWA Chiaki

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# of Collaborated Products: 1 results
18. 遠藤寿

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# of Collaborated Products: 1 results
19. NGUYEN DaiーHai

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
20. 山田誠

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Mamitsuka Hiroshi 馬見塚 拓

馬見塚 拓 マミツカ ヒロシ

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グラフ深層学習による超高速物理シミュレーションの実現:システム生物学への展開Principal Investigator

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Latent data structure estimation through integrating diverse dataPrincipal Investigator

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Development of new fabrication methods of polymer materials based on the structurally controlled hyperbranched polymers

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Developing machine learning based bioinformatics to decipher hidden biology of depression symptomsPrincipal Investigator

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Efficient estimation of data structure from multiple tensorsPrincipal Investigator

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Estimating the factor structure in multiple matricesPrincipal Investigator

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Analysis of Repetition Structure in Huge Sequences

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Estimating data structure embedded in semi-structured dataPrincipal Investigator

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生体内化合物の効率的な比較、探索、発見アルゴリズムの開発Principal Investigator

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生体高分子と結合する低分子化合物の効率的な比較、探索、発見アルゴリズムの開発Principal Investigator

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[Book] Machine Learning for Marketing2019

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[Book] Textbook of Machine Learning and Data Mining: with Bioinformatics Applications2018

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[Book] Data Mining for Systems Biology2018

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Mamitsuka Hiroshi 馬見塚拓

馬見塚拓マミツカヒロシ