Fujiwara Shin-ichi 藤原伸一

… Alternative Names

藤原伸一フジワラシンイチ

FUJIWARA Shin-ichi 藤原伸一

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Researcher Number	00362880
Other IDs
Affiliation (Current)	2025: 鳥取大学, 医学部, 准教授
Affiliation (based on the past Project Information) *help	2023: 鳥取大学, 医学部, 准教授 2015 – 2017: 鳥取大学, 医学部, 准教授 2011 – 2012: 鳥取大学, 医学部, 講師 2010: 鳥取大学, 医学部, 助教 2007 – 2008: 鳥取大学, 医学部, 助教 2005 – 2006: Tottori University, Faculty of Medicine, Research Associate, 医学部, 助手 2004: 国立大学法人鳥取大学, 医学部, 助手
Review Section/Research Field	Principal Investigator Basic Section 62010:Life, health and medical informatics-related / Life / Health / Medical informatics / Drug development chemistry Except Principal Investigator Bioinformatics/Life informatics / Life / Health / Medical informatics / Science and Engineering
Keywords	Principal Investigator 分子動力学 / MM/GBSA / プロトン化状態 / タンパク質 / 結合自由エネルギー / 分子シミュレーション / アミノ酸 / pH依存性 / pH / リガンド / ドッキングシミュレーション / 構造活性相関 / ヒト血清アルブミン … More Except Principal Investigator … More 分子動力学計算 / 高速多重極法 / 周期境界条件 / 頑健性 / 欠損値・欠測値 / 重ね合わせ / 立体構造 / 作業用共分散 / 占有率 / 共分散 / 構造重ね合わせ / fast multipole method / periodic boundary conditions / membrane proteins / molecular dynamics calculation / 薬物動態学 / 擬二次元周期性 / 膜タンパク質 / 生体生命情報学 / 蛋白質 / 生体分子 / 統計数学 / 反作用場法 / 生体超分子系 / 分子動力学 / コンピュータシミュレーション / 並列分散計算 / 薬物動態 / 並列分散処理 / クラスタ計算 / 専用計算機 / 計算グリッド Less

pH-dependent binding free energy calculations using molecular simulationsPrincipal Investigator
- Principal Investigator
  
  藤原伸一
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Tottori University
Binding free energy calculation based on various protonation statesPrincipal Investigator
- Principal Investigator
  
  Fujiwara Shin-ichi
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Tottori University
Robust methods for analyzing trajectories for protein dynamics
- Principal Investigator
  
  Amisaki Takashi
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Tottori University
Comparisons of three-dimensional structures of proteins using hierarchical models and regularization for between-protein variations
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Tottori University
Development of fast multipole reaction field methods for accurate simulations of super biomolecules
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  2006 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Tottori University
タンパク質の構造と機能の予測のための計算資源提供型広域計算
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Tottori University
分子情報科学的手法によるヒト血清アルブミン-薬物結合解析に関する研究Principal Investigator
- Principal Investigator
  
  藤原伸一
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Drug development chemistry
- Research Institution
  Tottori University
Fast algorithms for accurate molecular dynamics simulations of membrane proteins
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  National University Corporation Tottori University

All 2017 2013 2011 2008 2007 2006 2005

All Journal Article Presentation

[Journal Article] Fatty acid binding to serum albumin: Molecular simulation approaches.2013
- Author(s)
  Fujiwara S
- Journal Title
  
  Biochim Biophys Acta
  
  Volume: 1830 Issue: 12 Pages: 5427-5434
- DOI
  10.1016/j.bbagen.2013.03.032
- NAID
  120006724720
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22500275
[Journal Article] Fatty acid binding to serum albumin: Molecular simulation approaches2013
- Author(s)
  S. Fujiwara and T. Amisaki
- Journal Title
  
  Biochim. Biophys. Acta
- NAID
  120006724720
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22500275
[Journal Article] Steric and allosteric effects of fatty acids on the binding of warfarin to human serum albumin revealed by molecular dynamics and free energy calculations2011
- Author(s)
  S. Fujiwara and T. Amisaki
- Journal Title
  
  Chem. Pharm. Bull.
  
  Volume: 59 Pages: 860-867
- NAID
  130000748020
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22500275
[Journal Article] Steric and Allosteric Effects of Fatty Acids on the Binding of Warfarin to Human Serum Albumin Revealed by Molecular Dynamics and Free Energy Calculations2011
- Author(s)
  Fujiwara, S.
- Journal Title
  
  Chemical and Pharmaceutical Bulletin
  
  Volume: 59 Issue: 7 Pages: 860-867
- DOI
  10.1248/cpb.59.860
- NAID
  130000748020
- ISSN
  0009-2363, 1347-5223
- Language
  English
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22500275
[Journal Article] Identification of High Affinity Fatty Acid Bindng Sites on Human Serum Albumin by MM-PBSA Method2008
- Author(s)
  Fujiwara, S
- Journal Title
  
  Biophysical Journal 94
  
  Pages: 95-103
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18500226
[Journal Article] Identification of high affinity fatty acid binding sites on human serum albumin by MM-PBSA method2008
- Author(s)
  S. Fujiwara and T. Amisaki
- Journal Title
  
  Biophys. J. 94
  
  Pages: 95-103
- NAID
  120006724722
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18500226
[Journal Article] Molecular dynamics study of conformational changes in human serum albumin by binding of fatty acids2006
- Author(s)
  Fujiwara, S.
- Journal Title
  
  Proteins : Structure, Function, and Bioinformatics 64・3
  
  Pages: 730-739
- NAID
  120006724724
- Data Source
  KAKENHI-PROJECT-18500226
[Journal Article] Molecular dynamics study of conformational changes in human serum albumin by binding of fatty acids2006
- Author(s)
  S. Fujiwara and T. Amisaki
- Journal Title
  
  Proteins 64
  
  Pages: 730-739
- NAID
  120006724724
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18500226
[Journal Article] Molecular dynamics study of conformational changes in human serum albumin by binding of fatty acids2006
- Author(s)
  S.Fujiwara
- Journal Title
  
  PROTEINS : Structure, Function, and Bioinformatics (掲載決定)
- NAID
  120006724724
- Data Source
  KAKENHI-PROJECT-16016265
[Journal Article] Implementation and Evaluation of Multiple GridRPC Services for Molecular Dynamics Simulations of Proteins2006
- Author(s)
  T. Amisaki and S. Fujiwara
- Journal Title
  
  IPSJ Transactions on Advanced Computing Systems 47
  
  Pages: 182-192
- NAID
  130000058309
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18500226
[Journal Article] Molecular dynamics study of conformational changes in human serum albumin by bindins of fatty acids2005
- Author(s)
  Fujiwara S et al.
- Journal Title
  
  Proceeding of the Australian Physiological Society 36
  
  Pages: 54-54
- Data Source
  KAKENHI-PROJECT-16790082
[Presentation] pH一定の分子動力学シミュレーションによって発生させたアミノ酸の様々なプロトン化状態に基づく結合自由エネルギー計算2017
- Author(s)
  藤原　伸一、網崎　孝志
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-15K16084
[Presentation] Regression method for comparison of multiple protein conformations2017
- Author(s)
  網崎孝志、藤原伸一
- Organizer
  日本生物物理学会第55回年会（熊本大学）
- Data Source
  KAKENHI-PROJECT-15K00404
[Presentation] 分子動力学シミュレーションによるhMTH1-8-oxo-dGMP間相互作用の解析2008
- Author(s)
  藤原伸一
- Organizer
  日本薬学会第128年会
- Place of Presentation
  横浜市
- Year and Date
  2008-03-28
- Data Source
  KAKENHI-PROJECT-18500226
[Presentation] 分子動力学シミュレーションによるhMTH1-8-oxo-dGMP 間相互作用の解析2008
- Author(s)
  藤原伸一、石飛文規、片倉和哉、網崎孝志、山縣ゆり子
- Organizer
  日本薬学会第128年会
- Place of Presentation
  パシフィコ横浜会議センター
- Year and Date
  2008-03-27
- Data Source
  KAKENHI-PROJECT-18500226
[Presentation] MM-PBSA 法によるヒト血清アルブミンの脂肪酸強結合部位の同定2007
- Author(s)
  藤原伸一、網崎孝志
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  パシフィコ横浜会議センター
- Year and Date
  2007-12-22
- Data Source
  KAKENHI-PROJECT-18500226
[Presentation] MM-PBSA 法によるヒト血清アルブミンの脂肪酸強結合部位の同定2007
- Author(s)
  藤原伸一、網崎孝志
- Organizer
  日本薬学会第127 年会
- Place of Presentation
  富山
- Year and Date
  2007-03-29
- Data Source
  KAKENHI-PROJECT-18500226
[Presentation] MM-PBSA法によるヒト血清アルブミンの脂肪酸強結合部位の同定2007
- Author(s)
  藤原伸一
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜市
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18500226
[Presentation] 酸化ヌクレオチド分解酵素ヒトMTH1の分子動力学シミュレーションによるダイナミクス解析2006
- Author(s)
  石飛文規、片倉和哉、藤原伸一、網崎孝志、山縣ゆり子
- Organizer
  第20回分子シミュレーション討論
- Place of Presentation
  仙台国際センター
- Year and Date
  2006-11-28
- Data Source
  KAKENHI-PROJECT-18500226

1. AMISAKI Takashi (20231996)

# of Collaborated Projects: 6 results

# of Collaborated Products: 11 results

Fujiwara Shin-ichi 藤原 伸一

藤原 伸一 フジワラ シンイチ

FUJIWARA Shin-ichi 藤原 伸一

Research Projects

Research Products

Co-Researchers

pH-dependent binding free energy calculations using molecular simulationsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Binding free energy calculation based on various protonation statesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Robust methods for analyzing trajectories for protein dynamics

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Comparisons of three-dimensional structures of proteins using hierarchical models and regularization for between-protein variations

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of fast multipole reaction field methods for accurate simulations of super biomolecules

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

タンパク質の構造と機能の予測のための計算資源提供型広域計算

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

分子情報科学的手法によるヒト血清アルブミン-薬物結合解析に関する研究Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Fast algorithms for accurate molecular dynamics simulations of membrane proteins

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Fatty acid binding to serum albumin: Molecular simulation approaches.2013

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Fatty acid binding to serum albumin: Molecular simulation approaches2013

Author(s)

Journal Title

NAID

Data Source

[Journal Article] Steric and allosteric effects of fatty acids on the binding of warfarin to human serum albumin revealed by molecular dynamics and free energy calculations2011

Author(s)

Journal Title

NAID

Data Source

[Journal Article] Steric and Allosteric Effects of Fatty Acids on the Binding of Warfarin to Human Serum Albumin Revealed by Molecular Dynamics and Free Energy Calculations2011

Author(s)

Journal Title

DOI

NAID

ISSN

Language

Data Source

[Journal Article] Identification of High Affinity Fatty Acid Bindng Sites on Human Serum Albumin by MM-PBSA Method2008

Author(s)

Fujiwara Shin-ichi 藤原伸一

藤原伸一フジワラシンイチ

FUJIWARA Shin-ichi 藤原伸一