Shiwa Yuh 志波優

… Alternative Names

志波優シワユウ

SHIWA Yuh 志波優

SHIWA Yu 志波優

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Researcher Number	00647753
Other IDs
Affiliation (Current)	2025: 東京農業大学, 生命科学部, 准教授
Affiliation (based on the past Project Information) *help	2025: 東京農業大学, 生命科学部, 准教授 2020 – 2023: 東京農業大学, 生命科学部, 准教授 2018: 東京農業大学, 生命科学部, 准教授 2017 – 2018: 東京農業大学, 生命科学部, 助教 2015: 岩手医科大学, いわて東北メディカル・メガバンク機構, 講師 2014 – 2015: 岩手医科大学, その他部局等, 講師 2013: 岩手医科大学, その他部局等, 助教
Review Section/Research Field	Principal Investigator Basic Section 43060:System genome science-related / System genome science Except Principal Investigator Basic Section 38060:Applied molecular and cellular biology-related / Cardiovascular medicine
Keywords	Principal Investigator ゲノム / Galaxy / MinION / ナノポアシーケンサー / バイオインフォマティクス / 微生物ゲノム Except Principal Investigator 転写制御 / リボソームタンパク質遺伝子 / 出芽酵母 / FKBP … More / リボソーム / 転写 / 酵母 / 真核生物 / HMGBタンパク質 / TORC1 / ラパマイシン/FK506 / FKBP12 / カンジダグラブラータ / リボソームタンパク質 / 次世代シーケンサー / 白血球 / トランスクリプトーム解析 / DNAメチル / 冠動脈疾患 / バイオマーカー / microRNA / microRNA解析 / 3層オミックス解析 / DNAメチル化解析 / 震災ストレス / 動脈硬化性疾患 / Small RNA / DNAメチル化 Less

バイオエアロゾルからの高感度・高精度ウイルス叢解析技術の開発Principal Investigator
- Principal Investigator
  
  志波優
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Tokyo University of Agriculture
真核生物のリボソーム合成制御の新規機構：ラパマイシン結合タンパク質の真の役割
- Principal Investigator
  
  笠原浩司
- Project Period (FY)
  2023 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 38060:Applied molecular and cellular biology-related
- Research Institution
  Tokyo University of Agriculture
真核生物のリボソーム合成制御の新規機構：ラパマイシン結合タンパク質の真の役割
- Principal Investigator
  
  笠原浩司
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 38060:Applied molecular and cellular biology-related
- Research Institution
  Tokyo University of Agriculture
Development a cloud-based analysis environment that enables bioinformatics analysis for nanopore sequencer in the fieldPrincipal Investigator
- Principal Investigator
  
  SHIWA Yuh
- Project Period (FY)
  2017 – 2018
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  System genome science
- Research Institution
  Tokyo University of Agriculture
The great earthquake stress is associated to dysregulation of atherosclerosis-related genes in general population.
- Principal Investigator
  
  Satoh Mamoru
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Cardiovascular medicine
- Research Institution
  Iwate Medical University

All 2023 2020 2018 2017 2015 2014

All Journal Article Presentation

[Journal Article] TFIID dependency of steady-state mRNA transcription altered epigenetically by simultaneous functional loss of Taf1 and Spt3 is Hsp104-dependent2023
- Author(s)
  Iwami R, Takai N, Matsutani M, Shiwa Y, Kokubo H, Kasahara K, Kokubo T.
- Journal Title
  
  PLoS One
  
  Volume: 18 Issue: 2 Pages: e0281233-e0281233
- DOI
  10.1371/journal.pone.0281233
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K05965, KAKENHI-PROJECT-23K05642
[Journal Article] Fpr1, a primary target of rapamycin, functions as a transcription factor for ribosomal protein genes cooperatively with Hmo1 in Saccharomyces cerevisiae.2020
- Author(s)
  Koji Kasahara, Risa Nakayama, Yuh Shiwa, Yu Kanesaki, Taichiro Ishige, Hirofumi Yoshikawa, Tetsuro Kokubo
- Journal Title
  
  PLoS Genetics
  
  Volume: 16(6) Issue: 6 Pages: e1008865-e1008865
- DOI
  10.1371/journal.pgen.1008865
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K05965, KAKENHI-PROJECT-18K06063
[Journal Article] Adjustment of Cell-Type Composition Minimizes Systematic Bias in Blood DNA Methylation Profiles Derived by DNA Collection Protocols.2015
- Author(s)
  Shiwa Y, Hachiya T, Furukawa R, Ohmomo H, Ono K, Kudo H, Hata J, Hozawa A, Iwasaki M, Matsuda K, Minegishi N, Satoh M, Tanno K, Yamaji T, Wakai K, Hitomi J, Kiyohara Y, Kubo M, Tanaka H, Tsugane S, Yamamoto M, Sobue K, Shimizu A.
- Journal Title
  
  PLoS ONE
  
  Volume: 6 Issue: 1 Pages: 8018-8018
- DOI
  10.1371/journal.pone.0147519
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K09464, KAKENHI-PROJECT-26460776, KAKENHI-PROJECT-26461482, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-24591404, KAKENHI-PROJECT-25461138
[Journal Article] Reduction of systematic bias in transcriptome data from human peripheral blood mononuclear cells for transportation and biobanking.2014
- Author(s)
  Ohmomo H, Hachiya T, Shiwa Y, Furukawa R, Ono K, Ito S, Ishida Y, Satoh M, Hitomi J, Sobue K, Shimizu A.
- Journal Title
  
  PLoS One
  
  Volume: 8 Issue: 8 Pages: e104283-e104283
- DOI
  10.1371/journal.pone.0104283
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-25110728, KAKENHI-PROJECT-25461138
[Presentation] 作ったツール，どうやってユーザーに届ける？～ Galaxy，Docker，クラウドを活用する：Galaxy にツールを実装・公開するまでの流れ2018
- Author(s)
  志波優
- Organizer
  第7回生命医薬情報学連合大会
- Data Source
  KAKENHI-PROJECT-17K18045
[Presentation] ワークフロー共有にGalaxyを利用する2017
- Author(s)
  志波優
- Organizer
  第40回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-17K18045

1. 笠原浩司 (40304159)

# of Collaborated Projects: 2 results

# of Collaborated Products: 2 results
2. Satoh Mamoru (90305996)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. ITOH Tomonori (30347851)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. MAESAWA Chihaya (10326647)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. ISHIKAWA Yuh (20583537)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. HACHIYA Tsuyoshi (20580088)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 祖父江憲治

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
8. 峯岸直子

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Shiwa Yuh 志波 優

志波 優 シワ ユウ

SHIWA Yuh 志波 優

SHIWA Yu 志波 優

Research Projects

Research Products

Co-Researchers

バイオエアロゾルからの高感度・高精度ウイルス叢解析技術の開発Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

真核生物のリボソーム合成制御の新規機構：ラパマイシン結合タンパク質の真の役割

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

真核生物のリボソーム合成制御の新規機構：ラパマイシン結合タンパク質の真の役割

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development a cloud-based analysis environment that enables bioinformatics analysis for nanopore sequencer in the fieldPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

The great earthquake stress is associated to dysregulation of atherosclerosis-related genes in general population.

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] TFIID dependency of steady-state mRNA transcription altered epigenetically by simultaneous functional loss of Taf1 and Spt3 is Hsp104-dependent2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Fpr1, a primary target of rapamycin, functions as a transcription factor for ribosomal protein genes cooperatively with Hmo1 in Saccharomyces cerevisiae.2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Adjustment of Cell-Type Composition Minimizes Systematic Bias in Blood DNA Methylation Profiles Derived by DNA Collection Protocols.2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Reduction of systematic bias in transcriptome data from human peripheral blood mononuclear cells for transportation and biobanking.2014

Author(s)

Journal Title

DOI

Data Source

[Presentation] 作ったツール，どうやってユーザーに届ける？ ～ Galaxy，Docker，クラウドを活用する：Galaxy にツールを実装・公開するまでの流れ2018

Author(s)

Organizer

Data Source

[Presentation] ワークフロー共有にGalaxyを利用する2017

Author(s)

Organizer

Data Source

Shiwa Yuh 志波優

志波優シワユウ

SHIWA Yuh 志波優

SHIWA Yu 志波優

[Presentation] 作ったツール，どうやってユーザーに届ける？～ Galaxy，Docker，クラウドを活用する：Galaxy にツールを実装・公開するまでの流れ2018