Oda Arisa 小田有沙

Researcher Number	00760084
Other IDs
Affiliation (Current)	2025: 東京大学, 大学院総合文化研究科, 助教
Affiliation (based on the past Project Information) *help	2022 – 2024: 東京大学, 大学院総合文化研究科, 助教 2019: 東京大学, 大学院総合文化研究科, 助教 2016 – 2018: 東京大学, 教養学部, 特任助教
Review Section/Research Field	Principal Investigator Transformative Research Areas, Section (III) / Basic Section 38020:Applied microbiology-related / Basic Section 43030:Functional biochemistry-related / System genome science
Keywords	Principal Investigator 酵母 / ストレス応答 / 菌類 / 多細胞 / 培養 / 適応 / 発現制御 / グルコース飢餓ストレス応答

多細胞化の起源を秘める菌類の排他的コミュニケーションの解明Principal Investigator
- Principal Investigator
  
  小田有沙
- Project Period (FY)
  2024 – 2025
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  The University of Tokyo
閉塞系での培養による環境悪化への酵母の適応メカニズムの解析Principal Investigator
- Principal Investigator
  
  小田有沙
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 38020:Applied microbiology-related
- Research Institution
  The University of Tokyo
Identification of novel cell-to-cell signaling substances in yeast stress response and their effects on proliferationPrincipal Investigator
- Principal Investigator
  
  Oda Arisa
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43030:Functional biochemistry-related
- Research Institution
  The University of Tokyo
Macro level cellular adaptation by lncRNA mediated gene regulationPrincipal Investigator
- Principal Investigator
  
  Oda Arisa
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  System genome science
- Research Institution
  The University of Tokyo

All 2022 2018 2017 2016

All Journal Article Presentation

[Journal Article] Autotoxin-mediated latecomer killing in yeast communities2022
- Author(s)
  Oda Arisa H.、Tamura Miki、Kaneko Kunihiko、Ohta Kunihiro、Hatakeyama Tetsuhiro S.
- Journal Title
  
  PLOS Biology
  
  Volume: 20 Issue: 11 Pages: 3001844-3001844
- DOI
  10.1371/journal.pbio.3001844
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K16070, KAKENHI-PLANNED-17H06386
[Journal Article] Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts2022
- Author(s)
  Yoshito Hirata, Arisa H. Oda, Chie Motono, Masanori Shiro, Kunihiro Ohta
- Journal Title
  
  Scientific Reports
  
  Volume: 12-1 Issue: 1 Pages: 11757-11757
- DOI
  10.1038/s41598-022-15038-4
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K12068, KAKENHI-PROJECT-19K16070
[Journal Article] Linear Regression Links Transcriptomic Data and Cellular Raman Spectra2018
- Author(s)
  Kobayashi-Kirschvink, K. J., Nakaoka, H., Oda, A., Kamei, K. F., Nosho, K., Fukushima, H., Kanesaki, Y., Yajima, S., Masaki, H., Ohta, K., Wakamoto, Y.
- Journal Title
  
  Cell Systems
  
  Volume: 7 Issue: 1 Pages: 104-117
- DOI
  10.1016/j.cels.2018.05.015
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15KT0075, KAKENHI-PROJECT-18K05416, KAKENHI-PROJECT-15H05746, KAKENHI-PROJECT-17H03789, KAKENHI-PROJECT-17J07408, KAKENHI-PROJECT-17J08992, KAKENHI-PROJECT-17H03711, KAKENHI-PROJECT-16K18477
[Journal Article] Replication stress induces accumulation of FANCD2 at central region of large fragile genes.2018
- Author(s)
  Okamoto Y, Iwasaki WM, Kugou K, Takahashi KK, Oda A, Sato K, Kobayashi W, Kawai H, Sakasai R, Takaori-Kondo A, Yamamoto T, Kanemaki MT, Taoka M, Isobe T, Kurumizaka H, Innan H, Ohta K, Ishiai M, Takata M.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 46(6) Issue: 6 Pages: 2932-2944
- DOI
  10.1093/nar/gky058
- NAID
  120006488604
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K00547, KAKENHI-PROJECT-26291018, KAKENHI-PLANNED-17H06380, KAKENHI-PLANNED-25116002, KAKENHI-PROJECT-15H01738, KAKENHI-PROJECT-17H01408, KAKENHI-PROJECT-16H07295, KAKENHI-PROJECT-16K15095, KAKENHI-PROJECT-15K16127, KAKENHI-PROJECT-18K11648, KAKENHI-PUBLICLY-18H04719, KAKENHI-PUBLICLY-18H05097, KAKENHI-PROJECT-17H00785, KAKENHI-PROJECT-18H02170, KAKENHI-PROJECT-15H04403, KAKENHI-PROJECT-20K20310, KAKENHI-PROJECT-17H03711, KAKENHI-PROJECT-16K18477
[Journal Article] Phenotypic diversification by enhanced genome restructuring after induction of multiple DNA double-strand breaks2018
- Author(s)
  Muramoto Nobuhiko、Oda Arisa、Tanaka Hidenori、Nakamura Takahiro、Kugou Kazuto、Suda Kazuki、Kobayashi Aki、Yoneda Shiori、Ikeuchi Akinori、Sugimoto Hiroki、Kondo Satoshi、Ohto Chikara、Shibata Takehiko、Mitsukawa Norihiro、Ohta Kunihiro
- Journal Title
  
  Nature Communications
  
  Volume: 9 Issue: 1 Pages: 1995-1995
- DOI
  10.1038/s41467-018-04256-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H03711, KAKENHI-PROJECT-16K18477
[Journal Article] Transcriptomes and Raman spectra are linked linearly through a shared low-dimensional subspace2017
- Author(s)
  Kobayashi-Kirschvink, K. J., Nakaoka, H., Oda, A., Kamei, K. F., Nosho, K., Fukushima, H., Kanesaki, Y., Yajima, S., Masaki, H., Ohta, K., Wakamoto, Y.
- Journal Title
  
  bioRxiv
  
  Volume: NA Pages: 235580-235580
- DOI
  10.1101/235580
- Open Access
- Data Source
  KAKENHI-PROJECT-15KT0075, KAKENHI-PROJECT-16K18477, KAKENHI-PROJECT-26291018, KAKENHI-PROJECT-25711008, KAKENHI-PROJECT-17H03711
[Journal Article] Correlation of Meiotic DSB Formation and Transcription Initiation Around Fission Yeast Recombination Hotspots.2017
- Author(s)
  . Yamada, M. Okamura, H. Murakami, K.Ohta, T. Yamada
- Journal Title
  
  Genetics
  
  Volume: in press Issue: 2 Pages: 801-809
- DOI
  10.1534/genetics.116.197954
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26440186, KAKENHI-PROJECT-16K18477, KAKENHI-PROJECT-17K07392, KAKENHI-PROJECT-26291018, KAKENHI-PLANNED-17H06380, KAKENHI-PROJECT-26440104, KAKENHI-PROJECT-17H03711
[Journal Article] Local potentiation of stress-responsive genes by upstream noncoding transcription.2016
- Author(s)
  Takemata N, Oda A, Yamada T, Galipon J, Miyoshi T, Suzuki Y, Sugano S, Hoffman CS, Hirota K, Ohta K.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 印刷中 Issue: 11 Pages: 5174-89
- DOI
  10.1093/nar/gkw142
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K14443, KAKENHI-PROJECT-26291018, KAKENHI-PLANNED-23114003, KAKENHI-PROJECT-13J08245, KAKENHI-PUBLICLY-16H01314, KAKENHI-PROJECT-16H06306, KAKENHI-PROJECT-16H02957, KAKENHI-PROJECT-16K12598, KAKENHI-PROJECT-16K18471, KAKENHI-PROJECT-16K18477
[Journal Article] Three-dimensional reconstruction of single-cell chromosome structure using recurrence plots2016
- Author(s)
  Hirata Y, Oda A, Ohta K, Aihara K
- Journal Title
  
  Scientific Reports
  
  Volume: 6 Issue: 1 Pages: 34982-34982
- DOI
  10.1038/srep34982
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K18477, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-26291018
[Presentation] CRISPR/dCas9 を用いた転写制御における off-target 解析2018
- Author(s)
  安心院祥、小田有沙、仮屋園遼、太田邦史
- Organizer
  第36回染色体ワークショップ・第17回核ダイナミクス研究会
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] 耐熱性制限酵素による大規模ゲノム再編成2018
- Author(s)
  中村隆宏、小田有沙、村本伸彦、田中秀典,久郷和人、須田一毅、太田邦史
- Organizer
  酵母遺伝学フォーラム第51回研究報告会
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] ヒストンバリアント H2A.Z のクロマチン導入部位決定機構解析2018
- Author(s)
  高橋大輔、北川紗帆、小田有沙、仮屋園遼、尾間由佳子、太田邦史、原田昌彦
- Organizer
  第36回染色体ワークショップ・第17回核ダイナミクス研究会
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] The novel cis-acting element for metabolic stress-induced lncRNA(mlonRNA) and meiotic recombination in fisson yeast.2018
- Author(s)
  S. Senmatsu, R. Asada, A. Oda, C.S. Hoffman, K. Ohta, K. Hirota
- Organizer
  The 11th 3R＆3C Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] TAQing: 制限酵素を用いたゲノムシャッフリング技術2018
- Author(s)
  小田有沙,中村隆宏,村本伸彦,田中秀典,久郷和人,光川典宏,太田邦史
- Organizer
  生命科学系フロンティアミーティング2018（国立遺伝学研究所研究会）
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] TAQing : Artificial Genome Rearrangement by a Restriction Enzyme, Taq??.2018
- Author(s)
  A. Oda, T.Nakamura, N.Muramoto, H.Tanaka, K. Kugou, K.Ohta
- Organizer
  The 11th 3R＆3C Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] metabolic stress-induced lncRNA(mlonRNA)転写を介したクロマチン再編成が、転写と減数分裂期組換えを制御する2018
- Author(s)
  千松賢史、浅田隆大、小田有沙、Charles S Hoffman, 太田邦史、廣田耕志
- Organizer
  第36回染色体ワークショップ・第17回核ダイナミクス研究会
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] Artificial Genome Rearrangement System using a Restriction Enzyme2018
- Author(s)
  Arisa Oda, Takahiro Nakamura, Nobuhiko Muramoto, Hidenori Tanaka,Kazuto Kugou, Kunihiro Ohta
- Organizer
  CSHL meetings 2018, The Biology of Genomes
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] Hi-C データで得られる染色体の距離情報を扱う2018
- Author(s)
  小田有沙、平田祥人、太田邦史、合原一幸
- Organizer
  日本遺伝学会第90回大会
- Invited
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] 3D chromosome structure reconstruction from single-cell Hi-C data using recurrence plots2018
- Author(s)
  Arisa Oda, Yoshito Hirata, Kunihiro Ohta & Kazuyuki Aihara
- Organizer
  6th Annual Winter q-bio Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] Hi-Cのデータから染色体の立体構造を解く2017
- Author(s)
  小田有沙、平田祥人、太田邦史、合原一幸
- Organizer
  2017年度生命科学系学会合同年次大会
- Invited
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] 制限酵素を用いた人為的ゲノム再編誘導2017
- Author(s)
  小田有沙、中村隆宏、村本伸彦、田中秀典、久郷和人、光川典宏、太田邦史
- Organizer
  第35回染色体ワークショップ第16回各ダイナミクス研究会
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] Reconstruction of single-cell chromosome 3D structure using recurrence plots2017
- Author(s)
  Arisa Oda, Yoshito Hirata, Kunihiro Ohta, Kazuyuki Aihara
- Organizer
  winter Qbio 2017
- Place of Presentation
  アメリカ合衆国、Hawaii
- Year and Date
  2017-02-20
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] Transcriptional dynamics of sense and antisense long noncoding RNAs during glucose starvation2017
- Author(s)
  Arisa Oda, Tetsuhiro Hatakeyama, Kunihiko Kaneko & Kunihiro Ohta
- Organizer
  The 9th International Fission Yeast Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] 1細胞Hi-Cデータを用いた染色体三次元構造解析手法2017
- Author(s)
  小田有沙、平田祥人、太田邦史、合原一幸
- Organizer
  染色体ワークショップ
- Place of Presentation
  千葉県木更津市、かずさDNA研究所
- Year and Date
  2017-01-11
- Data Source
  KAKENHI-PROJECT-16K18477
[Presentation] 1細胞Hi-Cによる染色体3次元構造解析手法2016
- Author(s)
  小田有沙、平田祥人、太田邦史、合原一幸
- Organizer
  第39回日本分子生物学会年会
- Place of Presentation
  神奈川県横浜市、パシフィコ横浜
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PROJECT-16K18477

1. Hatakeyama Tetsuhiro S.

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
2. YAMADA Takatomi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
3. SHIRO Masanori

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
4. 若本祐一

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
5. 太田邦史

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
6. 河合秀彦

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Oda Arisa 小田 有沙

Research Projects

Research Products

Co-Researchers

多細胞化の起源を秘める菌類の排他的コミュニケーションの解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

閉塞系での培養による環境悪化への酵母の適応メカニズムの解析Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Identification of novel cell-to-cell signaling substances in yeast stress response and their effects on proliferationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Macro level cellular adaptation by lncRNA mediated gene regulationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Autotoxin-mediated latecomer killing in yeast communities2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Linear Regression Links Transcriptomic Data and Cellular Raman Spectra2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Replication stress induces accumulation of FANCD2 at central region of large fragile genes.2018

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Phenotypic diversification by enhanced genome restructuring after induction of multiple DNA double-strand breaks2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Transcriptomes and Raman spectra are linked linearly through a shared low-dimensional subspace2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Correlation of Meiotic DSB Formation and Transcription Initiation Around Fission Yeast Recombination Hotspots.2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Local potentiation of stress-responsive genes by upstream noncoding transcription.2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Three-dimensional reconstruction of single-cell chromosome structure using recurrence plots2016

Author(s)

Journal Title

DOI

Data Source

[Presentation] CRISPR/dCas9 を用いた転写制御における off-target 解析2018

Author(s)

Organizer

Data Source

[Presentation] 耐熱性制限酵素による大規模ゲノム再編成2018

Author(s)

Oda Arisa 小田有沙