Shimizu Masahiro 清水将裕

Researcher Number	00879869
Affiliation (Current)	2025: 京都大学, 複合原子力科学研究所, 助教
Affiliation (based on the past Project Information) *help	2024: 京都大学, 複合原子力科学研究所, 助教 2020 – 2021: 京都大学, 複合原子力科学研究所, 研究員
Review Section/Research Field	Principal Investigator Basic Section 43040:Biophysics-related / 0701:Biology at molecular to cellular levels, and related fields Except Principal Investigator Basic Section 49050:Bacteriology-related
Keywords	Principal Investigator 小角散乱 / 高速原子間力顕微鏡 / 分子動力学計算 / 亜鉛結合タンパク質 / アンサンブルモデリング / 小角散乱法 / 銅タンパク質 / 金属タンパク質 / 分子動力学シミュレーション Except Principal Investigator 結核 … More / 創薬 / 構造解析 / 核酸相互作用 / 天然変性蛋白質 / 潜伏感染 / 薬剤パーシスター / 天然変性 / NTN症 Less

結核・抗酸菌症の治療期間を短縮し、疾病母体を除する革新的薬剤開発に向けた基盤研究
- Principal Investigator
  
  松本壮吉
- Project Period (FY)
  2024 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 49050:Bacteriology-related
- Research Institution
  Niigata University
結核菌天然変性蛋白質-核酸凝集の分子機序の解明と核酸医薬への応用
- Principal Investigator
  
  西山晃史
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 49050:Bacteriology-related
- Research Institution
  Niigata University
タンパク質間亜鉛授受反応におけるナノダイナミクスの役割の解明Principal Investigator
- Principal Investigator
  
  清水将裕
- Project Period (FY)
  2024 – 2025
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Kyoto University
The elaborately designed domain motion of the multidomain protein CCS and its physical originPrincipal Investigator
- Principal Investigator
  
  Shimizu Masahiro
- Project Period (FY)
  2020 – 2021
- Research Category
  
  Grant-in-Aid for Research Activity Start-up
- Review Section
  
  0701:Biology at molecular to cellular levels, and related fields
- Research Institution
  Kyoto University

All 2022 2021

All Journal Article Presentation

[Journal Article] Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach2022
- Author(s)
  Yunoki Yasuhiro、Matsumoto Atsushi、Morishima Ken、Martel Anne、Porcar Lionel、Sato Nobuhiro、Yogo Rina、Tominaga Taiki、Inoue Rintaro、Yagi-Utsumi Maho、Okuda Aya、Shimizu Masahiro、Urade Reiko、Terauchi Kazuki、Kono Hidetoshi、Yagi Hirokazu、Kato Koichi、Sugiyama Masaaki
- Journal Title
  
  Communications Biology
  
  Volume: 5 Issue: 1 Pages: 184-184
- DOI
  10.1038/s42003-022-03143-z
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-18H05534, KAKENHI-PROJECT-19K05833, KAKENHI-PROJECT-20K06579, KAKENHI-PROJECT-19KK0071, KAKENHI-PROJECT-21K15051, KAKENHI-PROJECT-18H05229, KAKENHI-PROJECT-20K22629
[Journal Article] Deuteration Aiming for Neutron Scattering2021
- Author(s)
  Okuda Aya、Inoue Rintaro、Morishima Ken、Saio Tomohide、Yunoki Yasuhiro、Yagi-Utsumi Maho、Yagi Hirokazu、Shimizu Masahiro、Sato Nobuhiro、Urade Reiko、Kato Koichi、Sugiyama Masaaki
- Journal Title
  
  Biophysics and Physicobiology
  
  Volume: 18 Issue: 0 Pages: 16-27
- DOI
  10.2142/biophysico.bppb-v18.003
- NAID
  130008000165
- ISSN
  2189-4779
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06579, KAKENHI-PROJECT-20K22629, KAKENHI-PROJECT-19KK0071, KAKENHI-PLANNED-18H05534, KAKENHI-PROJECT-18H05229, KAKENHI-PROJECT-18J21063, KAKENHI-PROJECT-19K16088
[Journal Article] Solution structure of multi-domain protein ER-60 studied by aggregation-free SAXS and coarse-grained-MD simulation2021
- Author(s)
  Okuda Aya、Shimizu Masahiro、Morishima Ken、Inoue Rintaro、Sato Nobuhiro、Urade Reiko、Sugiyama Masaaki
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 1-13
- DOI
  10.1038/s41598-021-85219-0
- NAID
  120006997066
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06579, KAKENHI-PROJECT-20K22629, KAKENHI-PROJECT-19KK0071, KAKENHI-PLANNED-18H05534, KAKENHI-PROJECT-18H05229, KAKENHI-PROJECT-19K16088
[Presentation] X線小角散乱データと分子動力学計算に基づくマルチドメインタンパク質ER-60の動態解析2021
- Author(s)
  清水将裕、奥田綾、守島健、佐藤信浩、井上倫太郎、裏出令子、杉山正明
- Organizer
  2020年度量子ビームサイエンスフェスタ
- Data Source
  KAKENHI-PROJECT-20K22629
[Presentation] Dynamics of multi-domain protein ER-60 revealed by small angle X-ray scattering data and molecular dynamics simulations2021
- Author(s)
  Masahiro Shimizu、Aya Okuda、Ken Morishima、Nobuhiro Sato、Rintaro Inoue、Reiko Urade、Masaaki Sugiyama
- Organizer
  25th Congress and General Assembly of the International Union of Crystallography (the XXV IUCr Congress)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K22629
[Presentation] X線小角散乱データと粗視化分子動力学計算に基づく生体分子の構造ダイナミクスの解明2021
- Author(s)
  清水将裕、奥田綾、守島健、柚木康弘、佐藤信浩、井上倫太郎、裏出令子、杉山正明
- Organizer
  第59回日本生物物理学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-20K22629

1. 松本壮吉 (30244073)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. 伊東孝祐 (20502397)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 古寺哲幸 (30584635)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 西山晃史 (80452069)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. 梅田健一 (60746915)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. INOUE Rintaro

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
7. 杉山正明

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
8. 河野秀俊

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Shimizu Masahiro 清水 将裕

Research Projects

Research Products

Co-Researchers

結核・抗酸菌症の治療期間を短縮し、疾病母体を除する革新的薬剤開発に向けた基盤研究

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

結核菌天然変性蛋白質-核酸凝集の分子機序の解明と核酸医薬への応用

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

タンパク質間亜鉛授受反応におけるナノダイナミクスの役割の解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

The elaborately designed domain motion of the multidomain protein CCS and its physical originPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Deuteration Aiming for Neutron Scattering2021

Author(s)

Journal Title

DOI

NAID

ISSN

Language

Data Source

[Journal Article] Solution structure of multi-domain protein ER-60 studied by aggregation-free SAXS and coarse-grained-MD simulation2021

Author(s)

Journal Title

DOI

NAID

Data Source

[Presentation] X線小角散乱データと分子動力学計算に基づくマルチドメインタンパク質ER-60の動態解析2021

Author(s)

Organizer

Data Source

[Presentation] Dynamics of multi-domain protein ER-60 revealed by small angle X-ray scattering data and molecular dynamics simulations2021

Author(s)

Organizer

Data Source

[Presentation] X線小角散乱データと粗視化分子動力学計算に基づく生体分子の構造ダイナミクスの解明2021

Author(s)

Organizer

Data Source

Shimizu Masahiro 清水将裕