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SODA Kunitsugu  曽田 邦嗣

ORCIDConnect your ORCID iD *help
… Alternative Names

曽田 国嗣  ソダ クニツグ

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Researcher Number 10011686
Other IDs
External Links
Affiliation (based on the past Project Information) *help 2007 – 2008: Nagaoka University of Technology, 工学部, 教授
1995 – 2005: Nagaoka Univ.of Technol., Dept.of BioEngineering, Professor, 工学部, 教授
2004: Nagaoka University of Technology, Department of Bioengineering, Professor, 生物系, 教授
2000: 長岡技術科学大学, 生物系, 教授
1994: 長岡技術科学大学, 工学部, 助教授
Review Section/Research Field
Principal Investigator
Biophysics / Bioinformatics/Life informatics / Science and Engineering / Biological Sciences
Except Principal Investigator
Biological Sciences
Keywords
Principal Investigator
溶液X線散乱 / 非天然状態 / 立体構造 / 蛋白質 / 中間状態 / 非天然構造 / simulation / シミュレーション / 折り畳み / 疎水効果 … More / モルテン・グロビュル / 変性状態 / 構造安定性 / 水和効果 / structural transition / solution x-ray scattering / fibrillization / protein aggregation / amyloid / hexafluoro-isopropanol / calcitonin / β-構造 / 立体構造転移 / 会合体 / 会合体形成 / α→β構造転移 / 構造転移 / 線維化 / 蛋白質会合 / アミロイド / 六弗化イソプロパノール / カルシトニン / protein / ionic charge / ion pair / thermodynamic quantities / structural stability / Coulomb energy / electrostatic interaction / 置換 / 電荷分布 / イオンペア / 立体構造安定性 / 変性熱力学量 / 酸変性 / ポアソン・ボルツマン方程式 / 解離基 / イオン電荷 / イオン対 / 熱力学量 / クーロンエネルギー / 静電相互作用 / hydration effect / solution X-ray scattering / folding / molten globule / intermediate state / nonnative atate / structure / 水和自由エネルギー / クーロン相互作用 / 理想気体エントロピー / クローン相互作用 / 水和 / 折りたたみ / モルテングロビュル / 圧力効果 / 分子内空隙 / 原子充填密度 / 分子動力学 / 柔構造 / 等音酸滴定熱測定法 / 等温酸滴定熱測定法 / 示差走査熱測定法 / 逆疎水効果 / 分子動力学法 / 平均2乗半径 / 大局構造 / GroEL / シャペロニン / 複合体型蛋白質 / ディスタンス・ジオメトリ / 蛋白質安定性 / 蛋白質フォールディング / モルテン・ブロビュル … More
Except Principal Investigator
Alternative splicing / Hydrophobic cluster / Sugar-protein interaction / Human genome annotation / Cyanobacterium genome / 3D-keynote / Module / Prediction of genome function / 疎水殻の自動同定 / 確率的アラインメント法 / タンパク質-リガンド相互作用予測法 / 形質転換 / タンパク質フォールディング / タンパク質立体構造予測 / タンパク質-糖鎖予測 / サブユニット相互作用 / 疎水核 / タンパク質-糖鎖相互作用 / すき間 / ヒトゲノムアノテーション / Het PDB-Navi / タンパク質-リガンド相互作用 / 水和 / タンパク質-RNA相互作用 / FAMSBASE / RNA・タンパク質相互作用 / HetPDB-Navi / タンパク質間ネットワーク / 選択的スプライシング / 疎水クラスタ / 糖鎖-タンパク質相互作用 / ヒトゲノム・アノテーション / らん藻ゲノム / 3Dキーノート / モジュール / ゲノム機能予測 Less
  • Research Projects

    (10 results)
  • Research Products

    (33 results)
  • Co-Researchers

    (8 People)
  •  Molecular mechanism of the soft structure of proteins: Analysis of interior cavities and structural changes under pressurePrincipal Investigator

    • Principal Investigator
      SODA Kunitsugu
    • Project Period (FY)
      2007 – 2008
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Nagaoka University of Technology
  •  蛋白質の非天然状態における疎水効果の役割と分子機構の解析Principal Investigator

    • Principal Investigator
      曽田 邦嗣
    • Project Period (FY)
      2004 – 2005
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Nagaoka University of Technology
  •  Decoding of genome function and evolution based on the 3D structures of proteins

    • Principal Investigator
      GO Mitiko
    • Project Period (FY)
      2000 – 2004
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Nagahama Institute of Bio-Science and Technology
      Nagoya University
  •  溶液X線散乱プロフィルの計算による複合体型蛋白質の溶液構造の解析Principal Investigator

    • Principal Investigator
      曽田 邦嗣
    • Project Period (FY)
      1999
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas (A)
    • Review Section
      Biological Sciences
    • Research Institution
      Nagaoka University of Technology
  •  Structural transition of human calcitonin and molecular mechanism of fibrillizationPrincipal Investigator

    • Principal Investigator
      SODA Kunitsugu
    • Project Period (FY)
      1999 – 2000
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Biophysics
    • Research Institution
      Nagaoka Universsity of Technology
  •  ディスタンス・ジオメトリ法による蛋白質の非天然構造モデルの精密化Principal Investigator

    • Principal Investigator
      曽田 邦嗣
    • Project Period (FY)
      1998
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas (A)
    • Research Institution
      Nagaoka University of Technology
  •  溶液X線散乱模擬計算法による蛋白質の非天然構造の精密解析Principal Investigator

    • Principal Investigator
      曽田 邦嗣
    • Project Period (FY)
      1997
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Nagaoka University of Technology
  •  溶液X線散乱シミュレーションによる非天然状態蛋白質の構造解析Principal Investigator

    • Principal Investigator
      曽田 邦嗣
    • Project Period (FY)
      1996
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Nagaoka University of Technology
  •  EVALUATION OF CONTRIBUTIONS FROM ELECTROSTATIC INTERACTIONS TO THERMODYNAMIC QUANTITIES OF PROTEINSPrincipal Investigator

    • Principal Investigator
      SODA Kunitsugu
    • Project Period (FY)
      1996 – 1997
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Biophysics
    • Research Institution
      NAGAOKA UNIVERSITY OF TECHNOLOGY
  •  Hydration Effects on the Structure and Thermodynamics of Proteins in Nonnative StatesPrincipal Investigator

    • Principal Investigator
      SODA Kunitsugu
    • Project Period (FY)
      1994 – 1995
    • Research Category
      Grant-in-Aid for General Scientific Research (C)
    • Research Field
      Biophysics
    • Research Institution
      Nagaoka University of Technology

All 2008 2007 2006 2005 2003 2002 1999 Other

All Journal Article Presentation Book

  • [Book] 疎水効果, 水, 溶液X線散乱. タンパク質の事典(猪飼篤, 伏見譲, 卜部格, 上野川修一, 中村春木, 浜窪隆雄 編)2008

    • Author(s)
      曽田 邦嗣
    • Publisher
      朝倉書店
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Book] 「生物物理学ハンドブック」 : 水と水和2008

    • Author(s)
      曽田邦嗣
    • Total Pages
      5
    • Publisher
      朝倉書店
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Book] 「タンパク質の事典」 : 疎水効果, 水, 溶液X線散乱2008

    • Author(s)
      曽田邦嗣
    • Total Pages
      14
    • Publisher
      朝倉書店
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Book] 水と水和. 生物物理学ハンドブック(石渡信一, 桂勲, 桐野豊, 美宅成樹編)2007

    • Author(s)
      曽田 邦嗣
    • Publisher
      朝倉書店
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Book] "水の構造と特性","水分子のモデル","生体分子の水和","非天然状態の構造解析","揺らぎと実験観測量",バイオインフォマティクス事典(日本バイオインフォマティクス学会編)2006

    • Author(s)
      曽田 邦嗣
    • Publisher
      共立出版(in press)
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Book] 「タンパク質科学-構造・物性・機能」:物理的相互作用-静電相互作用,ファンデルワールス力,水素結合,疎水相互作用,その他2005

    • Author(s)
      曽田邦嗣
    • Total Pages
      13
    • Publisher
      化学同人
    • Data Source
      KAKENHI-PROJECT-16041214
  • [Book] "4.1物理的相互作用",タンパク質科学(後藤祐児・桑島邦博・谷澤克行編)2005

    • Author(s)
      曽田 邦嗣
    • Publisher
      化学同人
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Book] ポストゲノム時代と蛋白質分子熱力学の重要性2005

    • Author(s)
      曽田 邦嗣
    • Publisher
      熱測定 32
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Book] Nonnative structure of proteins and implications for protein folding, in "0ld and New Views of Protein Folding"1999

    • Author(s)
      Soda, K, Seki, Y.
    • Publisher
      Kuwajima,K.,and Arai, M.ed.,Elsevier
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-11680654
  • [Journal Article] Global Structure Analysis of Acid-Unfolded Myoglobin with Consideration to Effects of Intermolecular Coulomb Repulsion on Solution X-ray Scattering2007

    • Author(s)
      Seki Y, Tomizawa T, Hiragi Y & Soda, K.
    • Journal Title

      Biochemistry

      Pages: 234-244

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Journal Article] "structure and properties of water ", "models for water molecules", "hydration of biomolecules ", "structural analysis of nonnative status ", "structural fluctuation and experimentally observable quantities"2006

    • Author(s)
      Soda, K.
    • Journal Title

      Bioinformatics Jiten, Nihon Bioinfprmatics Gakkai-hen (Kyoritsu Syuppan Co.Ltd.) (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Journal Article] 4.1 physical interaction2005

    • Author(s)
      Soda, K.(Joint Contribution)
    • Journal Title

      Tanpakushitsu Kagaku (Kagaku-Dojin Publishing Co.Inc)

      Pages: 171-183

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Journal Article] Post-genome Era and Importance of Protein Thermodynamics2005

    • Author(s)
      Soda, K.
    • Journal Title

      NetsuSokutei 32

      Pages: 7-12

    • NAID

      10029864974

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Journal Article] ポストゲノム時代と蛋白質分子熱力学の重要性2005

    • Author(s)
      曽田邦嗣
    • Journal Title

      熱測定 32

      Pages: 7-12

    • NAID

      10029864974

    • Data Source
      KAKENHI-PROJECT-16041214
  • [Journal Article] ポストゲノム時代と蛋白質分子熱力学の重要性2005

    • Author(s)
      曽田 邦嗣
    • Journal Title

      熱測定 32

      Pages: 7-12

    • NAID

      10029864974

    • Data Source
      KAKENHI-PROJECT-12208006
  • [Journal Article] Structural Stability and Solution Structure of Chaperonin GroES Heptamer Studied by Synchrotron Small-angle X-ray Scattering2003

    • Author(s)
      Higurashi, T, Hiragi, Y., Ichimura, K., Seki, Y., Soda, K., Mizobata, T., Kawata, Y.
    • Journal Title

      J. Mol. Biol. 333

      Pages: 605-620

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Journal Article] Structural Stability and Solution Structure of Chaperonin GroES Heptamer Studied by Synchrotron Small-angle X-ray Scattering2003

    • Author(s)
      Higurashi, T, Hiragi, Y., Ichimura, K., Seki, Y., Soda, K., Mizobata, T., Kawata, Y.
    • Journal Title

      J.Mol.Biol. 333

      Pages: 605-620

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Journal Article] Direct Detection of the Protein Quaternary Structure and Denatured Entity by a Small-Angle Scattering Method : Guanidine Hydrochloride Denaturation of Chaperonin Protein GroEL2002

    • Author(s)
      Hiragi, Y., Seki, Y., Ichimura, K., Soda, K.
    • Journal Title

      J.Appl.Cryst. 35

      Pages: 1-7

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Journal Article] Direct Detection of the Protein Quaternary Structure and Denatured Entity by a Small-Angle Scattering Method : Guanidine Hydrochloride Denaturation of Chaperonin Protein GroEL2002

    • Author(s)
      Hiragi, Y., Seki, Y., Ichimura, K., Soda, K.
    • Journal Title

      J. Appl. Cryst. 35

      Pages: 1-7

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Journal Article] Contribution of Solvent Water to the Solution X-ray Scattering Profile of Proteins2002

    • Author(s)
      Seki, Y., Tomizawa, T., Khechinashvili, N.N., Soda, K.
    • Journal Title

      Biophys. Chem. 95

      Pages: 235-252

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Journal Article] Contribution of Solvent Water to the Solution X-ray Scattering Profile of Proteins2002

    • Author(s)
      Seki, Y., Tomizawa, T., Khechinashvili, N.N., Soda, K.
    • Journal Title

      Biophys.Chem. 95

      Pages: 235-252

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-12208006
  • [Journal Article] Nonnative structure of proteins and implications for protein folding1999

    • Author(s)
      Soda, K., Seki, Y.
    • Journal Title

      old and New Views of Protein Folding

      Pages: 41-50

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-11680654
  • [Journal Article] The compact and expanded denatured conformations of apomyoglobin in the methanol-water solvent1999

    • Author(s)
      Kamatari, Y.O, 0hji, S, Konno, T, Seki, Y, Soda, K, Kataoka, M, Akasaka, K
    • Journal Title

      Protein Science 8

      Pages: 873-882

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-11680654
  • [Journal Article] The compact and expanded denatured conformations of apomyoglobin in the methanol-water solvent1999

    • Author(s)
      Kamatari, Y.O., Ohji, S., Konno, T., Seki, Y., Soda, K., Kataoka, M., Akasaka, K.
    • Journal Title

      Protein Science 8

      Pages: 873-882

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-11680654
  • [Journal Article] "水の構造と特性","水分子のモデル","生体分子の水和","非天然状態の構造解析","揺らぎと実験観測量"

    • Author(s)
      曽田 邦嗣
    • Journal Title

      バイオインフォマティクス事典(日本バイオインフォマティクス学会編)(共立出版) (in press)

    • Data Source
      KAKENHI-PROJECT-12208006
  • [Presentation] Dynamics of Structural Fluctuations of Proteins and Hydration Effects2008

    • Author(s)
      Soda, K.
    • Organizer
      Third International Workshop on Proteins under Pressure
    • Place of Presentation
      Santa Fe, New Mexico, U.S.A.
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Presentation] J. Soft Structure of Proteins Analyzed by Atomic Packing Density and Volume Fluctuation Dynamics2008

    • Author(s)
      Soda, K, Seki, Y, Mori, K, Shimbo, Y, Matsumoto, H and Fujii
    • Organizer
      International Conference on Protein Science and Human Proteome Organization.(PRICPS-AOHUPO 2008)
    • Place of Presentation
      Cairns, Australia
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Presentation] Dynamics of Structural Fluctuations of Proteins and Hydration Effects2008

    • Author(s)
      Soda, K., Mori, K.& Seki, Y.
    • Organizer
      Intern. Conf, on Proteins Under Pressure
    • Place of Presentation
      Santa Fe, NM, USA
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Presentation] Soft Structure of Proteins Analyzed by Atomic Packing Density and Volume Fluctuation Dynamics2008

    • Author(s)
      Soda, K, Seki, Y, Mori, K, Shimbo, Y, Matsumoto, H, Fujii, J.
    • Organizer
      PRICPS - AOHUPO
    • Place of Presentation
      Cairns, Australia
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Presentation] Solvent- Reorganization Effects on Hydration Thermodynamic Quantities of Nonpolar Molecules by Molecular Dynamics Simulation2008

    • Author(s)
      Shimbo, Y & Soda, K
    • Organizer
      Third International Workshop on Proteins under Pressure
    • Place of Presentation
      Santa Fe, New Mexico, U.S.A.
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Presentation] Solvent-Reorganization Effects on Hydration Thermodynamic Quantities of Nonpolar Molecules by Molecular Dynamics Simulation2008

    • Author(s)
      Shimbo, Y. & Soda, K.
    • Organizer
      Intern. Conf, on Proteins Under Pressure
    • Place of Presentation
      Santa Fe, NM, USA
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Presentation] Dynamical Properties of Proteins as Analyzed by Molecular Volume Fluctuation2008

    • Author(s)
      Soda, K., Seki, Y., Shimbo, Y., Matsumoto, H., Fujii, J.
    • Organizer
      日本生物物理学会
    • Place of Presentation
      福岡
    • Year and Date
      2008-12-04
    • Data Source
      KAKENHI-PROJECT-19500252
  • [Presentation] Hydration Effects on Partial Molecular Volume of Proteins2007

    • Author(s)
      Seki, Y., Fujii, J. & Soda, K.
    • Organizer
      Biophys. Soc. Jpn.
    • Place of Presentation
      Yokohama, Jpn
    • Data Source
      KAKENHI-PROJECT-19500252
  • 1.  MIKI Yoichiro (80262476)
    # of Collaborated Projects: 4 results
    # of Collaborated Products: 0 results
  • 2.  城戸 俊一 (80195320)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 0 results
  • 3.  SEKI Yasutaka (30377220)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 6 results
  • 4.  GO Mitiko (70037290)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 5.  TAKAHASHI Kenichi (20322737)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 6.  SHIRAI Tsuyoshi (00262890)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 7.  YURA Kei (50252226)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 8.  木寺 詔紀 (00186280)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results

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