SODA Kunitsugu 曽田邦嗣

… Alternative Names

曽田国嗣ソダクニツグ

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Researcher Number	10011686
Other IDs
External Links
Affiliation (based on the past Project Information) *help	2007 – 2008: Nagaoka University of Technology, 工学部, 教授 1995 – 2005: Nagaoka Univ.of Technol., Dept.of BioEngineering, Professor, 工学部, 教授 2004: Nagaoka University of Technology, Department of Bioengineering, Professor, 生物系, 教授 2000: 長岡技術科学大学, 生物系, 教授 1994: 長岡技術科学大学, 工学部, 助教授
Review Section/Research Field	Principal Investigator Biophysics / Bioinformatics/Life informatics / Science and Engineering / Biological Sciences Except Principal Investigator Biological Sciences
Keywords	Principal Investigator 溶液X線散乱 / 非天然状態 / 立体構造 / 蛋白質 / 中間状態 / 非天然構造 / simulation / シミュレーション / 折り畳み / 疎水効果 … More / モルテン・グロビュル / 変性状態 / 構造安定性 / 水和効果 / structural transition / solution x-ray scattering / fibrillization / protein aggregation / amyloid / hexafluoro-isopropanol / calcitonin / β-構造 / 立体構造転移 / 会合体 / 会合体形成 / α→β構造転移 / 構造転移 / 線維化 / 蛋白質会合 / アミロイド / 六弗化イソプロパノール / カルシトニン / protein / ionic charge / ion pair / thermodynamic quantities / structural stability / Coulomb energy / electrostatic interaction / 置換 / 電荷分布 / イオンペア / 立体構造安定性 / 変性熱力学量 / 酸変性 / ポアソン・ボルツマン方程式 / 解離基 / イオン電荷 / イオン対 / 熱力学量 / クーロンエネルギー / 静電相互作用 / hydration effect / solution X-ray scattering / folding / molten globule / intermediate state / nonnative atate / structure / 水和自由エネルギー / クーロン相互作用 / 理想気体エントロピー / クローン相互作用 / 水和 / 折りたたみ / モルテングロビュル / 圧力効果 / 分子内空隙 / 原子充填密度 / 分子動力学 / 柔構造 / 等音酸滴定熱測定法 / 等温酸滴定熱測定法 / 示差走査熱測定法 / 逆疎水効果 / 分子動力学法 / 平均2乗半径 / 大局構造 / GroEL / シャペロニン / 複合体型蛋白質 / ディスタンス・ジオメトリ / 蛋白質安定性 / 蛋白質フォールディング / モルテン・ブロビュル … More Except Principal Investigator Alternative splicing / Hydrophobic cluster / Sugar-protein interaction / Human genome annotation / Cyanobacterium genome / 3D-keynote / Module / Prediction of genome function / 疎水殻の自動同定 / 確率的アラインメント法 / タンパク質-リガンド相互作用予測法 / 形質転換 / タンパク質フォールディング / タンパク質立体構造予測 / タンパク質-糖鎖予測 / サブユニット相互作用 / 疎水核 / タンパク質-糖鎖相互作用 / すき間 / ヒトゲノムアノテーション / Het PDB-Navi / タンパク質-リガンド相互作用 / 水和 / タンパク質-RNA相互作用 / FAMSBASE / RNA・タンパク質相互作用 / HetPDB-Navi / タンパク質間ネットワーク / 選択的スプライシング / 疎水クラスタ / 糖鎖-タンパク質相互作用 / ヒトゲノム・アノテーション / らん藻ゲノム / 3Dキーノート / モジュール / ゲノム機能予測 Less

Molecular mechanism of the soft structure of proteins: Analysis of interior cavities and structural changes under pressurePrincipal Investigator
- Principal Investigator
  
  SODA Kunitsugu
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Nagaoka University of Technology
蛋白質の非天然状態における疎水効果の役割と分子機構の解析Principal Investigator
- Principal Investigator
  
  曽田邦嗣
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Nagaoka University of Technology
Decoding of genome function and evolution based on the 3D structures of proteins
- Principal Investigator
  
  GO Mitiko
- Project Period (FY)
  2000 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Nagahama Institute of Bio-Science and Technology
  Nagoya University
溶液X線散乱プロフィルの計算による複合体型蛋白質の溶液構造の解析Principal Investigator
- Principal Investigator
  
  曽田邦嗣
- Project Period (FY)
  1999
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Review Section
  
  Biological Sciences
- Research Institution
  Nagaoka University of Technology
Structural transition of human calcitonin and molecular mechanism of fibrillizationPrincipal Investigator
- Principal Investigator
  
  SODA Kunitsugu
- Project Period (FY)
  1999 – 2000
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Nagaoka Universsity of Technology
ディスタンス・ジオメトリ法による蛋白質の非天然構造モデルの精密化Principal Investigator
- Principal Investigator
  
  曽田邦嗣
- Project Period (FY)
  1998
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  Nagaoka University of Technology
溶液X線散乱模擬計算法による蛋白質の非天然構造の精密解析Principal Investigator
- Principal Investigator
  
  曽田邦嗣
- Project Period (FY)
  1997
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Nagaoka University of Technology
溶液X線散乱シミュレーションによる非天然状態蛋白質の構造解析Principal Investigator
- Principal Investigator
  
  曽田邦嗣
- Project Period (FY)
  1996
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Nagaoka University of Technology
EVALUATION OF CONTRIBUTIONS FROM ELECTROSTATIC INTERACTIONS TO THERMODYNAMIC QUANTITIES OF PROTEINSPrincipal Investigator
- Principal Investigator
  
  SODA Kunitsugu
- Project Period (FY)
  1996 – 1997
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  NAGAOKA UNIVERSITY OF TECHNOLOGY
Hydration Effects on the Structure and Thermodynamics of Proteins in Nonnative StatesPrincipal Investigator
- Principal Investigator
  
  SODA Kunitsugu
- Project Period (FY)
  1994 – 1995
- Research Category
  
  Grant-in-Aid for General Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Nagaoka University of Technology

All 2008 2007 2006 2005 2003 2002 1999 Other

All Journal Article Presentation Book

[Book] 疎水効果, 水, 溶液X線散乱. タンパク質の事典(猪飼篤, 伏見譲, 卜部格, 上野川修一, 中村春木, 浜窪隆雄編)2008
- Author(s)
  曽田邦嗣
- Publisher
  朝倉書店
- Data Source
  KAKENHI-PROJECT-19500252
[Book] 「生物物理学ハンドブック」 : 水と水和2008
- Author(s)
  曽田邦嗣
- Total Pages
  5
- Publisher
  朝倉書店
- Data Source
  KAKENHI-PROJECT-19500252
[Book] 「タンパク質の事典」 : 疎水効果, 水, 溶液X線散乱2008
- Author(s)
  曽田邦嗣
- Total Pages
  14
- Publisher
  朝倉書店
- Data Source
  KAKENHI-PROJECT-19500252
[Book] 水と水和. 生物物理学ハンドブック(石渡信一, 桂勲, 桐野豊, 美宅成樹編)2007
- Author(s)
  曽田邦嗣
- Publisher
  朝倉書店
- Data Source
  KAKENHI-PROJECT-19500252
[Book] "水の構造と特性","水分子のモデル","生体分子の水和","非天然状態の構造解析","揺らぎと実験観測量",バイオインフォマティクス事典(日本バイオインフォマティクス学会編)2006
- Author(s)
  曽田邦嗣
- Publisher
  共立出版(in press)
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Book] 「タンパク質科学-構造・物性・機能」:物理的相互作用-静電相互作用,ファンデルワールス力,水素結合,疎水相互作用,その他2005
- Author(s)
  曽田邦嗣
- Total Pages
  13
- Publisher
  化学同人
- Data Source
  KAKENHI-PROJECT-16041214
[Book] "4.1物理的相互作用",タンパク質科学(後藤祐児・桑島邦博・谷澤克行編)2005
- Author(s)
  曽田邦嗣
- Publisher
  化学同人
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Book] ポストゲノム時代と蛋白質分子熱力学の重要性2005
- Author(s)
  曽田邦嗣
- Publisher
  熱測定 32
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Book] Nonnative structure of proteins and implications for protein folding, in "0ld and New Views of Protein Folding"1999
- Author(s)
  Soda, K, Seki, Y.
- Publisher
  Kuwajima,K.,and Arai, M.ed.,Elsevier
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-11680654
[Journal Article] Global Structure Analysis of Acid-Unfolded Myoglobin with Consideration to Effects of Intermolecular Coulomb Repulsion on Solution X-ray Scattering2007
- Author(s)
  Seki Y, Tomizawa T, Hiragi Y & Soda, K.
- Journal Title
  
  Biochemistry
  
  Pages: 234-244
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500252
[Journal Article] "structure and properties of water ", "models for water molecules", "hydration of biomolecules ", "structural analysis of nonnative status ", "structural fluctuation and experimentally observable quantities"2006
- Author(s)
  Soda, K.
- Journal Title
  
  Bioinformatics Jiten, Nihon Bioinfprmatics Gakkai-hen (Kyoritsu Syuppan Co.Ltd.) (in press)
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Journal Article] 4.1 physical interaction2005
- Author(s)
  Soda, K.(Joint Contribution)
- Journal Title
  
  Tanpakushitsu Kagaku (Kagaku-Dojin Publishing Co.Inc)
  
  Pages: 171-183
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Journal Article] Post-genome Era and Importance of Protein Thermodynamics2005
- Author(s)
  Soda, K.
- Journal Title
  
  NetsuSokutei 32
  
  Pages: 7-12
- NAID
  10029864974
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Journal Article] ポストゲノム時代と蛋白質分子熱力学の重要性2005
- Author(s)
  曽田邦嗣
- Journal Title
  
  熱測定 32
  
  Pages: 7-12
- NAID
  10029864974
- Data Source
  KAKENHI-PROJECT-16041214
[Journal Article] ポストゲノム時代と蛋白質分子熱力学の重要性2005
- Author(s)
  曽田邦嗣
- Journal Title
  
  熱測定 32
  
  Pages: 7-12
- NAID
  10029864974
- Data Source
  KAKENHI-PROJECT-12208006
[Journal Article] Structural Stability and Solution Structure of Chaperonin GroES Heptamer Studied by Synchrotron Small-angle X-ray Scattering2003
- Author(s)
  Higurashi, T, Hiragi, Y., Ichimura, K., Seki, Y., Soda, K., Mizobata, T., Kawata, Y.
- Journal Title
  
  J. Mol. Biol. 333
  
  Pages: 605-620
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Journal Article] Structural Stability and Solution Structure of Chaperonin GroES Heptamer Studied by Synchrotron Small-angle X-ray Scattering2003
- Author(s)
  Higurashi, T, Hiragi, Y., Ichimura, K., Seki, Y., Soda, K., Mizobata, T., Kawata, Y.
- Journal Title
  
  J.Mol.Biol. 333
  
  Pages: 605-620
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Journal Article] Direct Detection of the Protein Quaternary Structure and Denatured Entity by a Small-Angle Scattering Method : Guanidine Hydrochloride Denaturation of Chaperonin Protein GroEL2002
- Author(s)
  Hiragi, Y., Seki, Y., Ichimura, K., Soda, K.
- Journal Title
  
  J.Appl.Cryst. 35
  
  Pages: 1-7
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Journal Article] Direct Detection of the Protein Quaternary Structure and Denatured Entity by a Small-Angle Scattering Method : Guanidine Hydrochloride Denaturation of Chaperonin Protein GroEL2002
- Author(s)
  Hiragi, Y., Seki, Y., Ichimura, K., Soda, K.
- Journal Title
  
  J. Appl. Cryst. 35
  
  Pages: 1-7
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Journal Article] Contribution of Solvent Water to the Solution X-ray Scattering Profile of Proteins2002
- Author(s)
  Seki, Y., Tomizawa, T., Khechinashvili, N.N., Soda, K.
- Journal Title
  
  Biophys. Chem. 95
  
  Pages: 235-252
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Journal Article] Contribution of Solvent Water to the Solution X-ray Scattering Profile of Proteins2002
- Author(s)
  Seki, Y., Tomizawa, T., Khechinashvili, N.N., Soda, K.
- Journal Title
  
  Biophys.Chem. 95
  
  Pages: 235-252
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12208006
[Journal Article] Nonnative structure of proteins and implications for protein folding1999
- Author(s)
  Soda, K., Seki, Y.
- Journal Title
  
  old and New Views of Protein Folding
  
  Pages: 41-50
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-11680654
[Journal Article] The compact and expanded denatured conformations of apomyoglobin in the methanol-water solvent1999
- Author(s)
  Kamatari, Y.O, 0hji, S, Konno, T, Seki, Y, Soda, K, Kataoka, M, Akasaka, K
- Journal Title
  
  Protein Science 8
  
  Pages: 873-882
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-11680654
[Journal Article] The compact and expanded denatured conformations of apomyoglobin in the methanol-water solvent1999
- Author(s)
  Kamatari, Y.O., Ohji, S., Konno, T., Seki, Y., Soda, K., Kataoka, M., Akasaka, K.
- Journal Title
  
  Protein Science 8
  
  Pages: 873-882
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-11680654
[Journal Article] "水の構造と特性","水分子のモデル","生体分子の水和","非天然状態の構造解析","揺らぎと実験観測量"
- Author(s)
  曽田邦嗣
- Journal Title
  
  バイオインフォマティクス事典(日本バイオインフォマティクス学会編)(共立出版) (in press)
- Data Source
  KAKENHI-PROJECT-12208006
[Presentation] Dynamics of Structural Fluctuations of Proteins and Hydration Effects2008
- Author(s)
  Soda, K.
- Organizer
  Third International Workshop on Proteins under Pressure
- Place of Presentation
  Santa Fe, New Mexico, U.S.A.
- Data Source
  KAKENHI-PROJECT-19500252
[Presentation] J. Soft Structure of Proteins Analyzed by Atomic Packing Density and Volume Fluctuation Dynamics2008
- Author(s)
  Soda, K, Seki, Y, Mori, K, Shimbo, Y, Matsumoto, H and Fujii
- Organizer
  International Conference on Protein Science and Human Proteome Organization.(PRICPS-AOHUPO 2008)
- Place of Presentation
  Cairns, Australia
- Data Source
  KAKENHI-PROJECT-19500252
[Presentation] Dynamics of Structural Fluctuations of Proteins and Hydration Effects2008
- Author(s)
  Soda, K., Mori, K.& Seki, Y.
- Organizer
  Intern. Conf, on Proteins Under Pressure
- Place of Presentation
  Santa Fe, NM, USA
- Data Source
  KAKENHI-PROJECT-19500252
[Presentation] Soft Structure of Proteins Analyzed by Atomic Packing Density and Volume Fluctuation Dynamics2008
- Author(s)
  Soda, K, Seki, Y, Mori, K, Shimbo, Y, Matsumoto, H, Fujii, J.
- Organizer
  PRICPS - AOHUPO
- Place of Presentation
  Cairns, Australia
- Data Source
  KAKENHI-PROJECT-19500252
[Presentation] Solvent- Reorganization Effects on Hydration Thermodynamic Quantities of Nonpolar Molecules by Molecular Dynamics Simulation2008
- Author(s)
  Shimbo, Y & Soda, K
- Organizer
  Third International Workshop on Proteins under Pressure
- Place of Presentation
  Santa Fe, New Mexico, U.S.A.
- Data Source
  KAKENHI-PROJECT-19500252
[Presentation] Solvent-Reorganization Effects on Hydration Thermodynamic Quantities of Nonpolar Molecules by Molecular Dynamics Simulation2008
- Author(s)
  Shimbo, Y. & Soda, K.
- Organizer
  Intern. Conf, on Proteins Under Pressure
- Place of Presentation
  Santa Fe, NM, USA
- Data Source
  KAKENHI-PROJECT-19500252
[Presentation] Dynamical Properties of Proteins as Analyzed by Molecular Volume Fluctuation2008
- Author(s)
  Soda, K., Seki, Y., Shimbo, Y., Matsumoto, H., Fujii, J.
- Organizer
  日本生物物理学会
- Place of Presentation
  福岡
- Year and Date
  2008-12-04
- Data Source
  KAKENHI-PROJECT-19500252
[Presentation] Hydration Effects on Partial Molecular Volume of Proteins2007
- Author(s)
  Seki, Y., Fujii, J. & Soda, K.
- Organizer
  Biophys. Soc. Jpn.
- Place of Presentation
  Yokohama, Jpn
- Data Source
  KAKENHI-PROJECT-19500252

1. MIKI Yoichiro (80262476)

# of Collaborated Projects: 4 results

# of Collaborated Products: 0 results
2. 城戸俊一 (80195320)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
3. SEKI Yasutaka (30377220)

# of Collaborated Projects: 1 results

# of Collaborated Products: 6 results
4. GO Mitiko (70037290)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. TAKAHASHI Kenichi (20322737)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. SHIRAI Tsuyoshi (00262890)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. YURA Kei (50252226)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 木寺詔紀 (00186280)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

SODA Kunitsugu 曽田 邦嗣

曽田 国嗣 ソダ クニツグ

Research Projects

Research Products

Co-Researchers

Molecular mechanism of the soft structure of proteins: Analysis of interior cavities and structural changes under pressurePrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

蛋白質の非天然状態における疎水効果の役割と分子機構の解析Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Decoding of genome function and evolution based on the 3D structures of proteins

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

溶液X線散乱プロフィルの計算による複合体型蛋白質の溶液構造の解析Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Structural transition of human calcitonin and molecular mechanism of fibrillizationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

ディスタンス・ジオメトリ法による蛋白質の非天然構造モデルの精密化Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Institution

溶液X線散乱模擬計算法による蛋白質の非天然構造の精密解析Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Institution

溶液X線散乱シミュレーションによる非天然状態蛋白質の構造解析Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Institution

EVALUATION OF CONTRIBUTIONS FROM ELECTROSTATIC INTERACTIONS TO THERMODYNAMIC QUANTITIES OF PROTEINSPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Hydration Effects on the Structure and Thermodynamics of Proteins in Nonnative StatesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] 疎水効果, 水, 溶液X線散乱. タンパク質の事典(猪飼篤, 伏見譲, 卜部格, 上野川修一, 中村春木, 浜窪隆雄 編)2008

Author(s)

Publisher

Data Source

[Book] 「生物物理学ハンドブック」 : 水と水和2008

Author(s)

Total Pages

Publisher

Data Source

[Book] 「タンパク質の事典」 : 疎水効果, 水, 溶液X線散乱2008

Author(s)

Total Pages

Publisher

Data Source

[Book] 水と水和. 生物物理学ハンドブック(石渡信一, 桂勲, 桐野豊, 美宅成樹編)2007

Author(s)

Publisher

Data Source

SODA Kunitsugu 曽田邦嗣

曽田国嗣ソダクニツグ

[Book] 疎水効果, 水, 溶液X線散乱. タンパク質の事典(猪飼篤, 伏見譲, 卜部格, 上野川修一, 中村春木, 浜窪隆雄編)2008