Carninci Piero ＣａｒｎｉｎｃｉＰｉｅｒｏ

… Alternative Names

CARNINCI Piero カルニンチピエロ

CARNINCI PIero カルニンチピエロ

PIERO Carninci

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Researcher Number	10333296
Affiliation (Current)	2025: 国立研究開発法人理化学研究所, 生命医科学研究センター, チームディレクター
Affiliation (based on the past Project Information) *help	2018 – 2020: 国立研究開発法人理化学研究所, 生命医科学研究センター, 副センター長 2015 – 2017: 国立研究開発法人理化学研究所, ライフサイエンス技術基盤研究センター, 副センター長 2014: 独立行政法人理化学研究所, ライフサイエンス技術基盤研究センター, 副センター長 2012: 独立行政法人理化学研究所, ゲノム機能研究チーム, チームリーダー 2011: The Institute of Physical and Chemical Research, 研究員 … More 2008 – 2010: The Institute of Physical and Chemical Research, ゲノム機能研究チーム, チームリーダー 2009: ゲノム機能研究チーム, チームリーダー 2007: 独立行政法人理化学研究所, 林崎生体分子機能研究室, 先任研究員 Less
Review Section/Research Field	Principal Investigator Medical genome science / Molecular biology / Biomedical engineering/Biomaterial science and engineering / ゲノム生物学 / Applied genomics Except Principal Investigator Medical genome science / Biological Sciences
Keywords	Principal Investigator SINEUP / iPS / Non-coding mutations / Non-coding RNA / cancer / Transcriptomics / Enhancer / Promoter / Retrotransposons / Cancer … More / Genomics / SINEB2 elements / EEA elements / asRNA / lncRNAs / RBP / RNA biology / CLIP / RNA therapeutics / lentivirus / reprogramming / transcription factor / upregulation / Functional analysis / Clustering / Differential expression analysis / Data survey / Raw data processing and filtering / Repeat analysis / Regulatory Analysis / Transcriptome / Promoters / Deep-RACE / 可塑性 / トランスクリプトーム / ヒストン脱アセチル化酵素 / トリコスタチンA / バルプロ酸 / 非コードRNA / ナノCAGE / エピゲノム / ノンーコードRNA / プロモーター / RNA発現 / 転写 / 再プログラム / 幹細胞 / レトロトランスポゾン / ノンコードRNA / ゲノム … More Except Principal Investigator レット症候群 / Transcriptome analysis / ChIP sequencing / Transcriptome Analysis / ChIP Sequencing / FoxG1 / Mecp2 / Rett Syndrome / NOGO / ミエリン / マイクロアレー / 抑制性伝達 / 暗室飼育 / 視覚野 / クロマチン / エピジェニック / ヒストン / DNAメチル化 / ヒストン脱アセチル化 / エピジェネティック / Otx2 / ホメオ蛋白 / 可塑性 / 大脳視覚野 / パルブアルブミン / 大脳発達 / GABA / マイクロアレイ / 視覚 / 臨界期 Less

Role of retrotransposon in genome plasticity and diseasesPrincipal Investigator
- Principal Investigator
  
  Carninci Piero
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for JSPS Fellows
- Research Field
  
  Medical genome science
- Research Institution
  Institute of Physical and Chemical Research
Dissection of SINEUP ncRNAs, which have a potential to become next hot molecular biotechnology tool.Principal Investigator
- Principal Investigator
  
  Carninci Piero
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for JSPS Fellows
- Research Field
  
  Molecular biology
- Research Institution
  Institute of Physical and Chemical Research
ＳＩＮＥＵＰｓ：非翻訳アンチセンスＲＮＡPrincipal Investigator
- Principal Investigator
  
  Carninci Piero
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for JSPS Fellows
- Research Field
  
  Biomedical engineering/Biomaterial science and engineering
- Research Institution
  Institute of Physical and Chemical Research
ハイスループット・トランスクリプトミクスを通じてのニューロン構造可塑性規制の分析Principal Investigator
- Principal Investigator
  
  CARNINCI Piero, CARNINCI Piero
- Project Period (FY)
  2013 – 2014
- Research Category
  
  Grant-in-Aid for JSPS Fellows
- Research Field
  
  ゲノム生物学
- Research Institution
  The Institute of Physical and Chemical Research
Genomic targets of Mecp2 and Foxg1 in mouse visual cortex
- Principal Investigator
  
  ARNER Erik
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Young Scientists (A)
- Research Field
  
  Medical genome science
- Research Institution
  The Institute of Physical and Chemical Research
神経可塑性への系統的システム生物学アプローチPrincipal Investigator
- Principal Investigator
  
  CARNINCI Piero (CARNINCI PIero)
- Project Period (FY)
  2008 – 2011
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Applied genomics
- Research Institution
  The Institute of Physical and Chemical Research
Elucidation of visual cortical development by integrative approach
- Principal Investigator
  
  TAKAO Hensch
- Project Period (FY)
  2005 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The Institute of Physical and Chemical Research

All 2011 2010 2009 2008 2007 2006 2005 Other

All Journal Article Presentation Patent

[Journal Article] NanoCAGE : A High-Resolution Technique to Discover and Interrogate Cell Transcriptomes2011
- Author(s)
  Salimullah M, Mizuho S, Plessy C, Carninci P
- Journal Title
  
  Cold Spring Harb Protoc
  
  Pages: 1-11
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20241047
[Journal Article] The genome sequence of the spontaneously hypertensive rat : Analysis and functional significance.2010
- Author(s)
  Atanur SS, Birol I, Guryev V, Hirst M, Hummel O, Morrissey C, Behmoaras J, Fernandez-Suarez XM, Johnson MD, McLaren WM, Patone G, Petretto E, Plessy C, Rockland KS, Rockland C, Saar K, Zhao Y, Carninci P, Flicek P, Kurtz T, Cuppen E, Pravenec M, Hubner N, Jones SJ, Birney E, Aitman TJ
- Journal Title
  
  Genome Research
  
  Volume: 20 Pages: 791-803
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20241047
[Journal Article] Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan2010
- Author(s)
  Plessy C, Bertin N, Takahashi H, Salimullah M, Lassmann T, Vitezic M, Severin J, Olivarius S, Lazarevic D, Hornig N, Orland V, Bell I, Gao H, Dumais J, Kapranov P, Wang H, Davis CA, Gingeras TR, Kawai J, Daub CO, Hayashizaki Y, Gustincich S, Carninci P.
- Journal Title
  
  Nature Mothods
  
  Volume: 7 Pages: 528-34
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20241047
[Journal Article] RNA dust : where are the genes?2010
- Author(s)
  Carninci P.
- Journal Title
  
  DNA Research
  
  Volume: 17 Pages: 51-9
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20241047
[Journal Article] Whole transcriptome analysis : what are we still missing?2010
- Author(s)
  Saxena A, Carninci P.
- Journal Title
  
  Wires ; Systems Biology and Medicine
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20241047
[Journal Article] Altruistic functions for selfish DNA2009
- Author(s)
  Geoffrey J.Faulkner, Piero Caminci
- Journal Title
  
  Cell Cycle 8:18
  
  Pages: 2895-2900
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20241047
[Journal Article]2009
- Author(s)
  Piero Carninci
- Journal Title
  
  Tagging Transcription Starting Sites with CAGE in the Cap-Analysis Gene Expression Book(Panstanford, Singapore)
  
  Pages: 7-20
- Data Source
  KAKENHI-PROJECT-20241047
[Journal Article] Tunable fractionation of nucleic acids2009
- Author(s)
  Salimullah M., Kato S., Murata N., Kawazu C., Plessy C., Carninci P
- Journal Title
  
  BioTechniques 47(6)
  
  Pages: 1041-1042
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20241047
[Journal Article] A resource for transcriptomic analysis in the mouse brain2008
- Author(s)
  Plessy C., Fagiolini M., Wagastuma A., Harasawa N., Kuji T., Oba A., Kanzaki Y., Waki K., Nakahara H., Hensch T.K., Carninci P.
- Journal Title
  
  PLoS One 3,No.8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17021047
[Journal Article] High-throughput verification of transcriptional starting sites by Deep-RACE2008
- Author(s)
  Signe Olivarius, Charles Plessy, Piero Carninci
- Journal Title
  
  BioTechniques Vol. 46
  
  Pages: 130-132
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20241047
[Journal Article] A Resource for Transcriptomic Analysis in the Mouse Brain2008
- Author(s)
  Charles Plessy, Michela Fagiolini, Akiko Wagatsuma, Norihiro Harasawa, Takenobu Kuji, Atsuko, Asaka-Oba, Yukari Kanzaki, Sayaka Fujishima, Kazunori Waki, Hiroyuki Nakahara, Takao K. Hensch, Piero Carninci
- Journal Title
  
  POLS One Vol. 3
  
  Pages: 1-10
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20241047
[Journal Article] The transcriptional landscape of the mammalian genome.2005
- Author(s)
  Carninci et al.
- Journal Title
  
  Science 309
  
  Pages: 1559-1563
- Data Source
  KAKENHI-PROJECT-17021047
[Journal Article] RNA dust : where are the Genes
- Author(s)
  Piero Carninci
- Journal Title
  
  DNA Research (In press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20241047
[Patent] A Method of Manufacturing a Mixture of Amplified Double-Stranded Nucleic Acids Comprising Unknown Sequence2008
- Inventor(s)
  PIERO CARNINCI, CHARLES PLESSY, ROBERT SIMONE
- Industrial Property Rights Holder
  理化学研究所
- Industrial Property Number
  2008-159527
- Filing Date
  2008-06-18
- Data Source
  KAKENHI-PROJECT-20241047
[Patent] EPIGENETICAL EGULATION OF BRAIN PLASTICITY2007
- Inventor(s)
  SNG, Judy, HENSCH, Takao, FAGIOLINI, Michela, CARNINCI, Piero, LENNARTSSON, Andreas
- Industrial Property Rights Holder
  独立行政法人理化学研究所
- Filing Date
  2007-04-09
- Data Source
  KAKENHI-PROJECT-17021047
[Presentation] Sequencing RNA from cell compartments with CAGE2011
- Author(s)
  Carninci Piero
- Organizer
  Workshop "Chromatin structure and Nuclear Organization"
- Place of Presentation
  IFOM-IEO Campus
- Year and Date
  2011-01-21
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Deciphering mammalian transcriptome complexity by deep-CAGE2010
- Author(s)
  Carninci Piero
- Organizer
  BCCA Research Seminar Series
- Place of Presentation
  BC Cancer Research Centre, Vancouver(Invited)
- Year and Date
  2010-12-13
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Deciphering mammalian transcriptome complexity by deep-CAGE2010
- Author(s)
  Caminci Piero
- Organizer
  Seminar Series 2010 at University Medical Center Groningen
- Place of Presentation
  UMCG (University Medical Center Groningen), Groningen, Netherlands(Invited)
- Year and Date
  2010-10-28
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Deciphering mammalian transcriptome complexity by deep-CAGE2010
- Author(s)
  Carninci Piero
- Organizer
  Seminar at Ecole Polytechnique Federale de Lausanne
- Place of Presentation
  Ecole Polytechnique Federale de Lausanne (EPFL), Lausanne, Switzerland(Invited)
- Year and Date
  2010-11-26
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Deciphering mammalian transcriptome complexity by deep-CAGE2010
- Author(s)
  Carninci Piero
- Organizer
  Seminar at University of Geneva Medical School
- Place of Presentation
  University of Geneva Medical School, Geneva, Switzerland(Invited)
- Year and Date
  2010-11-25
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Mapping RNAs and their cellular compartmentalization via analysis of capped 5' ends of RNAs2009
- Author(s)
  Piero Carninci
- Organizer
  The Biology of Genomes
- Place of Presentation
  The Cold Spring Harbor Laboratory, New York
- Year and Date
  2009-05-09
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Deciphering the RNA dark matter by deepCAGE sequencing2009
- Author(s)
  Piero Carninci
- Organizer
  The 32nd annual meeting of the molecular biology society of Japan, MBSJ
- Place of Presentation
  PACIFICO YOKOHAMA
- Year and Date
  2009-12-11
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Deciphering the RNA dark matter by deepCAGE sequencing2009
- Author(s)
  Piero Carninci
- Organizer
  23rd International Mammalian Genome Conference
- Place of Presentation
  Hilton La Jolla Torrey Pines, USA
- Year and Date
  2009-11-02
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Nano CAGE promotome analysis of the mouse olfactory epithelium2008
- Author(s)
  CARNINCI Piero
- Organizer
  IMGC-22nd International Mammalian Genome Conference
- Place of Presentation
  Prague, Czech
- Year and Date
  2008-11-03
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Dynamics and complexity of the coding and non-coding transcriptome2008
- Author(s)
  CARNINCI Piero
- Organizer
  MGRED11-The 11^<th> International Meeting of the Microarray and Gene Expression Data Society
- Place of Presentation
  Trieste, Italy
- Year and Date
  2008-08-31
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Transcriptome of homogeneous neuron populations using nano-CAGE2008
- Author(s)
  CARNINCI Piero
- Organizer
  MGRED11-The 11^<th> International Meeting of the Microarray and Gene Expression Data Society
- Place of Presentation
  Trieste, Italy
- Year and Date
  2008-08-31
- Data Source
  KAKENHI-PROJECT-20241047
[Presentation] Molecular mechanisms of critical period reactivation2007
- Author(s)
  Piero Carninci, et. al.
- Organizer
  第30回日本分子生物学会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-17021047
[Presentation] Covalent modifications of chromatin regulate critical period plasticity in visual cortex2007
- Author(s)
  Sng J.C., Lennartsson A., Carninci P., Fagiolini M., Hensch T.K.
- Organizer
  7th Annual Meeting of Society for Neuroscience (Neuroscience 2007)
- Place of Presentation
  San Diego, USA
- Data Source
  KAKENHI-PROJECT-17021047
[Presentation] Epigenetic regulation of critical period plasticity in visual cortex2007
- Author(s)
  Sng J.C., Lennartsson A., Fagiolini M., Carninci P., Hensch T.K.
- Organizer
  第30回日本神経科学大会・第50回日本神経化学会大会・第17回日本神経回路学会大会(Neuro2007)
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-17021047
[Presentation] Gene expression profiling for the single population of interneuron in mouse cortex2007
- Author(s)
  Wagatsuma A., Kuji T., Oba A., Carninci P., Hensch T.K.
- Organizer
  37th Annual Meeting of Society for Neuroscience (Neuroscience 2007)
- Place of Presentation
  San Diego, USA
- Data Source
  KAKENHI-PROJECT-17021047
[Presentation] Full-length cDNA microarray analysis of critical period closure in mouse visual cortex2006
- Author(s)
  Hensch T.K., Fagiolini M., Kanzaki Y., Plessy C., Oba A., Wagatsuma A., Kuji T., Nakamura M., Kishikawa T., Chung M.H., Carninci P.
- Organizer
  36th Annual Meeting of Society for Neuroscience (Neuroscience 2006)
- Place of Presentation
  Atlanta, USA
- Data Source
  KAKENHI-PROJECT-17021047

1. TAKAO Hensch (60300878)

# of Collaborated Projects: 2 results

# of Collaborated Products: 6 results
2. FAGIOLINI Michela (20332330)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
3. KANZAKI Yukari (80391928)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
4. ARNER Erik (20571839)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. FORREST Alistair (40569084)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. SAXENA Alka (20618772)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. KWON Tae-Jun

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. KWON Tae・jun

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. BUDIC MARUSKA

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. RAHMAN MOHAMMED

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. ROBBE PAULINE

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Carninci Piero Ｃａｒｎｉｎｃｉ Ｐｉｅｒｏ

CARNINCI Piero カルニンチ ピエロ

CARNINCI PIero カルニンチ ピエロ

PIERO Carninci

Research Projects

Research Products

Co-Researchers

Role of retrotransposon in genome plasticity and diseasesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Dissection of SINEUP ncRNAs, which have a potential to become next hot molecular biotechnology tool.Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

ＳＩＮＥＵＰｓ：非翻訳アンチセンスＲＮＡPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

ハイスループット・トランスクリプトミクスを通じてのニューロン構造可塑性規制の分析Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Genomic targets of Mecp2 and Foxg1 in mouse visual cortex

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

神経可塑性への系統的システム生物学アプローチPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Elucidation of visual cortical development by integrative approach

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] NanoCAGE : A High-Resolution Technique to Discover and Interrogate Cell Transcriptomes2011

Author(s)

Journal Title

Data Source

[Journal Article] The genome sequence of the spontaneously hypertensive rat : Analysis and functional significance.2010

Author(s)

Journal Title

Data Source

[Journal Article] Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan2010

Author(s)

Journal Title

Data Source

[Journal Article] RNA dust : where are the genes?2010

Author(s)

Journal Title

Data Source

[Journal Article] Whole transcriptome analysis : what are we still missing?2010

Author(s)

Journal Title

Data Source

[Journal Article] Altruistic functions for selfish DNA2009

Author(s)

Journal Title

Data Source

[Journal Article]2009

Author(s)

Journal Title

Data Source

[Journal Article] Tunable fractionation of nucleic acids2009

Author(s)

Journal Title

Carninci Piero ＣａｒｎｉｎｃｉＰｉｅｒｏ

CARNINCI Piero カルニンチピエロ

CARNINCI PIero カルニンチピエロ