Yamaguchi Atsuko 山口敦子

… Alternative Names

山口敦子ヤマグチアツコ

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Researcher Number	10346108
Other IDs
Affiliation (Current)	2025: 東京都市大学, デザイン・データ科学部, 教授 2025: 大学共同利用機関法人情報・システム研究機構(機構本部施設等), データサイエンス共同利用基盤施設, 特任准教授
Affiliation (based on the past Project Information) *help	2023 – 2024: 東京都市大学, デザイン・データ科学部, 教授 2021 – 2022: 東京都市大学, その他部局等, 教授 2017 – 2019: 大学共同利用機関法人情報・システム研究機構(機構本部施設等), データサイエンス共同利用基盤施設, 特任准教授 2004: 京都大学, 化学研究所, 客員助手 2003: 京都大学, 化学研究所, 助手
Review Section/Research Field	Principal Investigator Basic Section 62020:Web informatics and service informatics-related / Web informatics, Service informatics Except Principal Investigator Biological Sciences / Basic Section 90130:Medical systems-related / Basic Section 52050:Embryonic medicine and pediatrics-related
Keywords	Principal Investigator 生命科学データベース / RDF / SPARQL / セマンティックウェブ / バイオインフォマティクス / 知識グラフ / メタデータ / リンクトオープンデータ / リンクト・オープン・データ / 生命科学データ統合 / 連合検索 … More Except Principal Investigator … More プロテオーム / 生体生命情報学 / 機械学習 / アルゴリズム / 症例情報共有・統合 / 症例情報統合化技術 / 症例情報国際共有 / Phenopackets / CaseSharing / 希少・遺伝性疾患 / 症例情報管理システム / ロングリードシーケンス / 画像診断 / てんかん / 脳形成異常 / 人工知能 Less

深層学習モデルで解き明かす発達性てんかん性脳症と脳形成異常の遺伝素因と画像診断
- Principal Investigator
  
  加藤光広
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 52050:Embryonic medicine and pediatrics-related
- Research Institution
  Showa University
Development of technology for integrating case information for international sharing
- Principal Investigator
  
  藤原豊史
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 90130:Medical systems-related
- Research Institution
  大学共同利用機関法人情報・システム研究機構(機構本部施設等)
Efficient knowledge acquisition based on the structure of large-scale knowledge graphs in life sciencesPrincipal Investigator
- Principal Investigator
  
  山口敦子
- Project Period (FY)
  2021 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62020:Web informatics and service informatics-related
- Research Institution
  Tokyo City University
Stable and fast federated search for integration of distributed knowledge of life science dataPrincipal Investigator
- Principal Investigator
  
  Yamaguchi Atsuko
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Web informatics, Service informatics
- Research Institution
  大学共同利用機関法人情報・システム研究機構(機構本部施設等)
生体内化合物の効率的な比較、探索、発見アルゴリズムの開発
- Principal Investigator
  
  馬見塚拓
- Project Period (FY)
  2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University
生体高分子と結合する低分子化合物の効率的な比較、探索、発見アルゴリズムの開発
- Principal Investigator
  
  馬見塚拓
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University

All 2024 2023 2022 2021 2020 2019 2018 2017 2004

All Journal Article Presentation

[Journal Article] A Comparative Study on Storing and Retrieval of URIs for Life Sciences Databases.2024
- Author(s)
  Atsuko Yamaguchi, Yasunori Yamamoto
- Journal Title
  
  CEUR Workshop Proceedings
  
  Volume: 3659 Pages: 9-12
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K12148
[Journal Article] Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for rare genetic diseases2023
- Author(s)
  Jae-Moon Shin, Toyofumi Fujiwara, Atsuko Yamaguchi
- Journal Title
  
  CEUR Workshop Proceedings
  
  Volume: 3415 Pages: 87-91
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K12148
[Journal Article] Advances in the development of PubCaseFinder, including the new application programming interface and matching algorithm2022
- Author(s)
  Toyofumi Fujiwara, Jae‐Moon Shin, Atsuko Yamaguchi
- Journal Title
  
  Human Mutation
  
  Volume: 43 Pages: 734-742
- DOI
  10.1002/humu.24341
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K12148
[Journal Article] Gene Ranking based on Paths from Phenotypes to Genes on Knowledge Graph2021
- Author(s)
  Yamaguchi Atsuko、Shin Jae-Moon、Fujiwara Toyofumi
- Journal Title
  
  The 10th International Joint Conference on Knowledge Graphs
  
  Volume: - Pages: 131-134
- DOI
  10.1145/3502223.3502240
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18K11545, KAKENHI-PROJECT-21K12148
[Journal Article] Investigating Schema Definitions Using RDFS and OWL 2 for RDF Databases in Life Sciences2020
- Author(s)
  Yamaguchi Atsuko、Kushida Tatsuya、Yamamoto Yasunori、Kozaki Kouji
- Journal Title
  
  Communications in Computer and Information Science
  
  Volume: 1157 Pages: 137-144
- DOI
  10.1007/978-981-15-3412-6_14
- ISBN
  9789811534119, 9789811534126
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K00434
[Journal Article] Finding the Maximum Common Subgraph of a Partial k-Tree and a Graph with a Polynomially Bounded Number of Spanning Trees2004
- Author(s)
  Yamaguchi, A. et al.
- Journal Title
  
  Information Processing Letters 92・2
  
  Pages: 57-63
- Data Source
  KAKENHI-PROJECT-16014211
[Presentation] A Semantic Design for the Biological Processes Associated with Intrinsically Disordered Proteins2024
- Author(s)
  Atsuko Yamaguchi, Yumiko Kado, Shigetaka Sakamoto, Satoshi Fukuchi, Motonori Ota
- Organizer
  SWAT4HCLS 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K12148
[Presentation] PubCaseFinder CaseSharing: A management system for case information on rare diseases2023
- Author(s)
  Toyofumi Fujiwara, Jae-Moon Shin, Atsuko Yamaguchi and Atsuo Kikuchi
- Organizer
  ESHG Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K11886
[Presentation] PubCaseFinder: 希少・遺伝性疾患に特化した症例情報管理システムの開発2023
- Author(s)
  藤原豊史、申在紋、山口敦子、菊池敦生
- Organizer
  第30回日本遺伝子診療学会大会
- Data Source
  KAKENHI-PROJECT-23K11886
[Presentation] CaseSharing: A management system for case information on rare diseases2023
- Author(s)
  Toyofumi Fujiwara, Jae-Moon Shin, Atsuko Yamaguchi and Atsuo Kikuchi
- Organizer
  ESHG Conference 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K12148
[Presentation] Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for rare genetic diseases2023
- Author(s)
  Jae-Moon Shin, Toyofumi Fujiwara, Atsuko Yamaguchi
- Organizer
  14th International SWAT4HCLS Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K12148
[Presentation] CaseSharing: A case information management system in PubCaseFinder suitable for sharing rare disease cases.2023
- Author(s)
  Toyofumi Fujiwara, Eisuke Dohi, Jae-Moon Shin, Yuka Tateishi, Yasunori Yamamoto, Atsuko Yamaguchi, Atsuo Kikuchi
- Organizer
  Human Genetics Asia
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K11886
[Presentation] PubCaseFinder: 希少・遺伝性疾患に特化した症例情報管理システムの開発2023
- Author(s)
  藤原豊史、申在紋、山口敦子、菊池敦生
- Organizer
  第30回日本遺伝子診療学会大会
- Data Source
  KAKENHI-PROJECT-21K12148
[Presentation] PubCaseFinder: A clinical decision support system for better diagnosis of rare genetic diseases2022
- Author(s)
  Jae-Moon Shin, Toyofumi Fujiwara, Atsuko Yamaguchi
- Organizer
  The 31st International KOGO Annual Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K12148
[Presentation] Propose of the method to design virtual gene panels for the acceleration of clinical genome interpretation2022
- Author(s)
  Toyofumi Fujiwara, Jae-Moon Shin, Hirotomo Saitsu, Atsuko Yamaguchi
- Organizer
  日本人類遺伝学会第67回大会
- Data Source
  KAKENHI-PROJECT-21K12148
[Presentation] PubCaseFinder:　Virtual Gene Panel を活用した WES/WGS 結果解釈補助機能の構築2022
- Author(s)
  藤原豊史，申在紋，才津浩智，山口敦子
- Organizer
  第29回日本遺伝子診療学会大会
- Data Source
  KAKENHI-PROJECT-21K12148
[Presentation] PubCaseFinder: Implementation of the new function designing Mondo-based virtual gene panels to increase diagnostic efficiency for rare genetic diseases2022
- Author(s)
  Toyofumi Fujiwara, Jae-Moon Shin, Hirotomo Saitsu, Atsuko Yamaguchi
- Organizer
  American Society of Human Genetics (ASHG) Annual Meeting 2022
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K12148
[Presentation] PubCaseFinder: A clinical decision support system for the diagnosis of patients with suspected rare genetic diseases2021
- Author(s)
  Toyofumi Fujiwara, Shin Jae-Moon, Susumu Goto, Atsuko Yamaguchi
- Organizer
  GA4GH 9th Plenary Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K12148
[Presentation] Semantic Integration of Intrinsically Disordered Proteins and Existing DBs2019
- Author(s)
  Atsuko Yamaguchi, Hideki Hatanaka, Satoshi Fukuchi, Motonori Ota
- Organizer
  12th International SWAT4HCLS Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] Umaka data extension: Towards Realisation of Practical SPARQL Endpoint Discovery Service for Life Sciences2019
- Author(s)
  Norio Kobayashi, Yasunori Yamamoto, Atsuko Yamaguchi
- Organizer
  12th International SWAT4HCLS Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] Finding the best RDF data by Umaka Suite2019
- Author(s)
  Yasunori Yamamoto, Atsuko Yamaguchi
- Organizer
  12th International SWAT4HCLS Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] Linked Open Dataを利用するアラインメントビューアの開発2018
- Author(s)
  藤博幸，山口敦子
- Organizer
  トーゴ―の日シンポジウム2018
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] ライフサイエンスのRDFデータベースにおけるスキーマ定義の現状分析2018
- Author(s)
  山口敦子, 櫛田達矢, 山本泰智, 古崎晃司
- Organizer
  第47回セマンティックウェブとオントロジー研究会
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] LOD Surfer API: クラス間関係を用いたLODからの情報抽出Web API2018
- Author(s)
  山口敦子, 小林紀郎, 臼田大輝, 桝屋啓志, 山本泰智, 古崎晃司
- Organizer
  第44回セマンティックウェブとオントロジー研究会
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] Implementing LOD Surfer as a Search System for the Annotation of Multiple Protein Sequence Alignment2018
- Author(s)
  Atsuko Yamaguchi, Hiroyuki Toh
- Organizer
  The 8th Joint International Semantic Technology Conference (JIST2018)
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] linked open data を利用するアラインメントビューアの開発2018
- Author(s)
  藤博幸，山口敦子
- Organizer
  第18回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] LOD Surfer API: クラス間関係に基づく LOD 探索のためのウェブ API2018
- Author(s)
  山口敦子，小林紀郎，桝屋啓志，山本泰智，古崎晃司
- Organizer
  2018年度人工知能学会全国大会（第32回）
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] LOD連合検索の課題と展望ータンパク質関連情報の取得を通じてー2018
- Author(s)
  山口敦子，藤博幸
- Organizer
  トーゴ―の日シンポジウム2018
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] Annotation of Proteins from LOD for a Viewer of Multiple Protein Sequence Alignment2018
- Author(s)
  Atsuko Yamaguchi, Hiroyuki Toh
- Organizer
  The 11th International Conference Semantic Web Applications and Tools for Life Sciences (SWAT4HCLS 2018)
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences2017
- Author(s)
  Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi
- Organizer
  10th International Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2017)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00434
[Presentation] Semantic Graph Analysis for Federated LOD Surfing in Life Sciences2017
- Author(s)
  Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi
- Organizer
  The 7th Joint International Semantic Technology Conference (JIST 2017)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00434

1. 馬見塚拓 (00346107)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
2. 小林紀郎 (20415160)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
3. 加藤光広 (10292434)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 宮冬樹 (50415311)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. 藤原豊史 (80815176)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
6. 土肥栄祐 (00719213)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
7. 山本泰智 (50470076)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
8. 申在紋 (70854199)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results

Yamaguchi Atsuko 山口 敦子

山口 敦子 ヤマグチ アツコ

Research Projects

Research Products

Co-Researchers

深層学習モデルで解き明かす発達性てんかん性脳症と脳形成異常の遺伝素因と画像診断

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of technology for integrating case information for international sharing

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Efficient knowledge acquisition based on the structure of large-scale knowledge graphs in life sciencesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Stable and fast federated search for integration of distributed knowledge of life science dataPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

生体内化合物の効率的な比較、探索、発見アルゴリズムの開発

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

生体高分子と結合する低分子化合物の効率的な比較、探索、発見アルゴリズムの開発

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] A Comparative Study on Storing and Retrieval of URIs for Life Sciences Databases.2024

Author(s)

Journal Title

Data Source

[Journal Article] Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for rare genetic diseases2023

Author(s)

Journal Title

Data Source

[Journal Article] Advances in the development of PubCaseFinder, including the new application programming interface and matching algorithm2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Gene Ranking based on Paths from Phenotypes to Genes on Knowledge Graph2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Investigating Schema Definitions Using RDFS and OWL 2 for RDF Databases in Life Sciences2020

Author(s)

Journal Title

DOI

ISBN

Data Source

[Journal Article] Finding the Maximum Common Subgraph of a Partial k-Tree and a Graph with a Polynomially Bounded Number of Spanning Trees2004

Author(s)

Journal Title

Data Source

[Presentation] A Semantic Design for the Biological Processes Associated with Intrinsically Disordered Proteins2024

Author(s)

Organizer

Data Source

[Presentation] PubCaseFinder CaseSharing: A management system for case information on rare diseases2023

Author(s)

Organizer

Data Source

[Presentation] PubCaseFinder: 希少・遺伝性疾患に特化した症例情報管理システムの開発2023

Author(s)

Organizer

Yamaguchi Atsuko 山口敦子

山口敦子ヤマグチアツコ

[Presentation] PubCaseFinder:　Virtual Gene Panel を活用した WES/WGS 結果解釈補助機能の構築2022