Okada Takashi 岡田崇

… Alternative Names

岡田崇オカダタカシ

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Researcher Number	10741043
Other IDs
Affiliation (Current)	2025: 京都大学, 医生物学研究所, 准教授
Affiliation (based on the past Project Information) *help	2025: 京都大学, 医生物学研究所, 准教授 2022 – 2023: 京都大学, 医生物学研究所, 准教授 2022: 京都大学, 医生物学研究所, 特定准教授 2019 – 2021: 国立研究開発法人理化学研究所, 数理創造プログラム, 上級研究員
Review Section/Research Field	Principal Investigator Basic Section 45020:Evolutionary biology-related Except Principal Investigator Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-related
Keywords	Principal Investigator 進化 / 集団遺伝学 / 機械学習 / ウイルス感染動態 / 季節性インフルエンザ / 子孫数分布 / コロナウイルス / 領域拡大 / クローン干渉 / ウイルス進化 … More Except Principal Investigator … More 情報流 / 複雑ネットワーク / 全脳イメージング / 摂動論 / 神経回路 / 環境適応 / 数理生物学 / ブーリアンネットワーク Less

複数入力神経回路の情報流相互作用理論と線虫の超高速計測に基づく演算機構の解明
- Principal Investigator
  
  森史
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-related
- Research Institution
  Kyushu University
過分散を伴う遺伝的浮動の進化理論と集団遺伝学的統計手法の革新Principal Investigator
- Principal Investigator
  
  岡田崇
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 45020:Evolutionary biology-related
- Research Institution
  Kyoto University
情報流のパス展開理論と神経ネットワーク活動計測に基づく生物の行動決定機構の解明
- Principal Investigator
  
  森史
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-related
- Research Institution
  Kyushu University
適応度進行波モデルと集団遺伝学に基づくクローン干渉を伴う適応進化の解明Principal Investigator
- Principal Investigator
  
  岡田崇
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 45020:Evolutionary biology-related
- Research Institution
  Kyoto University
Theory of information flow on complex networks and elucidation of adaptation mechanisms of organisms to their environments
- Principal Investigator
  
  Mori Fumito
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-related
- Research Institution
  Kyushu University
  The University of Electro-Communications

All 2024 2023 2022 2021 2020 2019

All Journal Article Presentation

[Journal Article] Stable States of a Microbial Community Are Formed by Dynamic Metabolic Networks with Members Functioning to Achieve Both Robustness and Plasticity2024
- Author(s)
  Masahiro Honjo, Kenshi Suzuki, Junya Katai, Yosuke Tashiro, Tomo Aoyagi, Tomoyuki Hori, Takashi Okada, Yasuhisa Saito, Hiroyuki Futamata
- Journal Title
  
  Microbes and Environments
  
  Volume: 39 Issue: 1 Pages: n/a
- DOI
  10.1264/jsme2.ME23091
- ISSN
  1342-6311, 1347-4405
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K03750, KAKENHI-PROJECT-22K06347, KAKENHI-PROJECT-22K14906, KAKENHI-PLANNED-19H05686, KAKENHI-PROJECT-21H03633
[Journal Article] Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England2024
- Author(s)
  Yu QinQin、Ascensao Joao A.、Okada Takashi、Boyd Olivia、Volz Erik、Hallatschek Oskar、The COVID-19 Genomics UK (COG-UK) Consortium
- Journal Title
  
  PLOS Pathogens
  
  Volume: 20 Issue: 4 Pages: e1012090-e1012090
- DOI
  10.1371/journal.ppat.1012090
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K06347
[Journal Article] Patterns of change in regulatory modules of chemical reaction systems induced by network modification2023
- Author(s)
  Hishida Atsuki、Okada Takashi、Mochizuki Atsushi
- Journal Title
  
  PNAS Nexus
  
  Volume: 3 Issue: 1
- DOI
  10.1093/pnasnexus/pgad441
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23KJ1324, KAKENHI-PROJECT-22K03453, KAKENHI-PROJECT-22K06347, KAKENHI-PLANNED-19H05678
[Journal Article] Information-transfer characteristics in network motifs2023
- Author(s)
  Mori Fumito、Okada Takashi
- Journal Title
  
  Physical Review Research
  
  Volume: 5 Issue: 1 Pages: 013037-013037
- DOI
  10.1103/physrevresearch.5.013037
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K03453, KAKENHI-PROJECT-19K03663
[Journal Article] Origin of diverse phosphorylation patterns in the ERBB system2022
- Author(s)
  Okada Takashi、Miyagi Hiraku、Sako Yasushi、Hiroshima Michio、Mochizuki Atsushi
- Journal Title
  
  Biophysical Journal
  
  Volume: 121 Issue: 3 Pages: 470-480
- DOI
  10.1016/j.bpj.2021.12.031
- NAID
  120007187502
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H05647, KAKENHI-PROJECT-19K03663, KAKENHI-PROJECT-22K18363, KAKENHI-PLANNED-18H05414, KAKENHI-PROJECT-23K23856
[Journal Article] Structural reduction of chemical reaction networks based on topology2021
- Author(s)
  Hirono Yuji、Okada Takashi、Miyazaki Hiroyasu、Hidaka Yoshimasa
- Journal Title
  
  Physical Review Research
  
  Volume: 3 Issue: 4 Pages: 043123-043123
- DOI
  10.1103/physrevresearch.3.043123
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K03663, KAKENHI-PROJECT-19K23413
[Journal Article] Flux-augmented bifurcation analysis in chemical reaction network systems2021
- Author(s)
  Okada Takashi、Mochizuki Atsushi、Furuta Mikio、Tsai Je-Chiang
- Journal Title
  
  Physical Review E
  
  Volume: 103 Issue: 6 Pages: 062212-062212
- DOI
  10.1103/physreve.103.062212
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K03663, KAKENHI-PROJECT-19H03196, KAKENHI-PLANNED-19H05678
[Journal Article] Dynamic sampling bias and overdispersion induced by skewed offspring distributions2021
- Author(s)
  Okada Takashi、Hallatschek Oskar
- Journal Title
  
  Genetics
  
  Volume: 219 Issue: 4
- DOI
  10.1093/genetics/iyab135
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K03663
[Journal Article] Diagrammatic expansion of information flows in stochastic Boolean networks2020
- Author(s)
  Mori Fumito、Okada Takashi
- Journal Title
  
  Physical Review Research
  
  Volume: 2 Issue: 4
- DOI
  10.1103/physrevresearch.2.043432
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K03663
[Presentation] Lineage frequency fluctuations reveal the spatial dynamics of disease transmission in SARS-CoV-22023
- Author(s)
  Takashi Okada
- Organizer
  APS March Meeting 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K03663
[Presentation] Lineage frequency fluctuations reveal the spatial dynamics of disease transmission in SARS-CoV-22023
- Author(s)
  Takashi Okada
- Organizer
  APS March Meeting 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K06347
[Presentation] Lineage frequency fluctuations reveal the spatial dynamics of disease transmission in SARS-CoV-22023
- Author(s)
  Takashi Okada
- Organizer
  APS March Meeting 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K03453
[Presentation] Network topology determines robustness and flexibility of chemical reaction systems2023
- Author(s)
  Takashi Okada
- Organizer
  ICIAM 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K03453
[Presentation] Network topology determines robustness and flexibility of chemical reaction sys- tems2023
- Author(s)
  Takashi OKada
- Organizer
  ICIAM
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K06347
[Presentation] Determining regulations of biochemical reaction systems from network topology2023
- Author(s)
  Takashi Okada
- Organizer
  The 29th East Asia Joint Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K03453
[Presentation] Determining regulations of biochemical reaction systems from network topology2023
- Author(s)
  Takashi Okada
- Organizer
  The 29th East Asia Joint Symposium
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K06347
[Presentation] ネットワークモチーフの情報転送の特性2023
- Author(s)
  森史、岡田崇
- Organizer
  第129回日本物理学会九州支部例会
- Data Source
  KAKENHI-PROJECT-22K03453
[Presentation] ネットワークモチーフ上の情報の流れ2023
- Author(s)
  森史、岡田崇
- Organizer
  日本物理学会第78回年次大会
- Data Source
  KAKENHI-PROJECT-22K03453
[Presentation] ブーリアンネットワークにおける移動エントロピーのダイアグラム展開2021
- Author(s)
  森史, 岡田崇
- Organizer
  日本物理学会第76回年次大会
- Data Source
  KAKENHI-PROJECT-19K03663
[Presentation] Time-Dependent Effective Sampling Bias in Populations with Broad Offspring Numbers2020
- Author(s)
  Takashi Okada
- Organizer
  APS March Meeting 2020
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K03663
[Presentation] ブーリアンネットワーク上の情報流をダイアグラムで展開する理論2020
- Author(s)
  森史, 岡田崇
- Organizer
  第126回日本物理学会九州支部例会
- Data Source
  KAKENHI-PROJECT-19K03663
[Presentation] 変動する環境における子孫数分布と進化ダイナミクス2020
- Author(s)
  岡田崇
- Organizer
  2020年度日本数理生物学会年会
- Data Source
  KAKENHI-PROJECT-19K03663
[Presentation] Emergent bias in population models with broad offspring number distributions2019
- Author(s)
  Takashi Okada, Oskar Hallatschek
- Organizer
  7th China-India-Japan-Korea International Conference on Mathematical Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K03663
[Presentation] 子孫数に偏りをもつ集団に自発的に生じる見かけの自然淘汰2019
- Author(s)
  岡田崇, Oskar Hallatschek
- Organizer
  日本数理生物学会
- Data Source
  KAKENHI-PROJECT-19K03663

1. Mori Fumito (90525891)

# of Collaborated Projects: 3 results

# of Collaborated Products: 6 results
2. 杉拓磨 (70571305)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. 佐甲靖志

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Okada Takashi 岡田 崇

岡田 崇 オカダ タカシ

Research Projects

Research Products

Co-Researchers

複数入力神経回路の情報流相互作用理論と線虫の超高速計測に基づく演算機構の解明

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

過分散を伴う遺伝的浮動の進化理論と集団遺伝学的統計手法の革新Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

情報流のパス展開理論と神経ネットワーク活動計測に基づく生物の行動決定機構の解明

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

適応度進行波モデルと集団遺伝学に基づくクローン干渉を伴う適応進化の解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Theory of information flow on complex networks and elucidation of adaptation mechanisms of organisms to their environments

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Stable States of a Microbial Community Are Formed by Dynamic Metabolic Networks with Members Functioning to Achieve Both Robustness and Plasticity2024

Author(s)

Journal Title

DOI

ISSN

Language

Data Source

[Journal Article] Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Patterns of change in regulatory modules of chemical reaction systems induced by network modification2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Information-transfer characteristics in network motifs2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Origin of diverse phosphorylation patterns in the ERBB system2022

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Structural reduction of chemical reaction networks based on topology2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Flux-augmented bifurcation analysis in chemical reaction network systems2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Dynamic sampling bias and overdispersion induced by skewed offspring distributions2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Diagrammatic expansion of information flows in stochastic Boolean networks2020

Author(s)

Okada Takashi 岡田崇

岡田崇オカダタカシ