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Koda Shin-ichi  甲田 信一

Researcher Number 10790404
Other IDs
  • ORCIDhttps://orcid.org/0000-0003-0993-3678
Affiliation (Current) 2025: 分子科学研究所, 理論・計算分子科学研究領域, 助教
Affiliation (based on the past Project Information) *help 2018 – 2023: 分子科学研究所, 理論・計算分子科学研究領域, 助教
Review Section/Research Field
Principal Investigator
Basic Section 32010:Fundamental physical chemistry-related
Keywords
Principal Investigator
反応モデル / 概日リズム / シアノバクテリア / 体内時計 / 最小エネルギー経路 / KaiB / 遷移状態探索 / 反応経路探索 / シミュレーション / 階層性 / ATP加水分解 / 数理モデル / 時計タンパク質
  • Research Projects

    (2 results)
  • Research Products

    (5 results)
  • Co-Researchers

    (1 People)
  •  シアノバクテリア時計タンパク質振動子の出力分子機構の理論的解明Principal Investigator

    • Principal Investigator
      甲田 信一
    • Project Period (FY)
      2022 – 2024
    • Research Category
      Grant-in-Aid for Early-Career Scientists
    • Review Section
      Basic Section 32010:Fundamental physical chemistry-related
    • Research Institution
      Institute for Molecular Science
  •  Theoretical study of clock proteins focusing on cooperation of spatio-temporal dynamicsPrincipal Investigator

    • Principal Investigator
      Koda Shin-ichi
    • Project Period (FY)
      2018 – 2021
    • Research Category
      Grant-in-Aid for Early-Career Scientists
    • Review Section
      Basic Section 32010:Fundamental physical chemistry-related
    • Research Institution
      Institute for Molecular Science

All 2024 2022 2020 2018

All Journal Article Presentation

  • [Journal Article] Locating Transition States by Variational Reaction Path Optimization with an Energy-Derivative-Free Objective Function2024

    • Author(s)
      Koda Shin-ichi、Saito Shinji
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 20 Issue: 7 Pages: 2798-2811

    • DOI

      10.1021/acs.jctc.3c01246

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23K17361, KAKENHI-PROJECT-22K14652
  • [Journal Article] Multimeric structure enables the acceleration of KaiB-KaiC complex formation induced by ADP/ATP exchange inhibition2022

    • Author(s)
      Shin-ichi Koda, Shinji Saito
    • Journal Title

      PLOS Computational Biology

      Volume: 18 Issue: 3 Pages: e1009243-e1009243

    • DOI

      10.1371/journal.pcbi.1009243

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K14185, KAKENHI-PROJECT-21H04676
  • [Journal Article] An alternative interpretation of the slow KaiB-KaiC binding of the cyanobacterial clock proteins2020

    • Author(s)
      Koda Shin-ichi、Saito Shinji
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 10439-10439

    • DOI

      10.1038/s41598-020-67298-7

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K14185, KAKENHI-PROJECT-16H02254
  • [Presentation] 非線形計画問題汎用ソルバを用いた最小エネルギー経路探索2022

    • Author(s)
      甲田信一,斉藤真司
    • Organizer
      第24回理論化学討論会
    • Data Source
      KAKENHI-PROJECT-22K14652
  • [Presentation] 時計タンパク質KaiCの一方向的アロステリに関する反応モデル構築に基づく考察2018

    • Author(s)
      甲田信一、斉藤真司
    • Organizer
      第21回理論化学討論会
    • Data Source
      KAKENHI-PROJECT-18K14185
  • 1.  齊藤 真司
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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