SARAI Akinori 皿井明倫

Researcher Number	20221286
External Links
Affiliation (based on the past Project Information) *help	2016: 九州工業大学, その他の研究科, 教授 2012: 九州工業大学, その他の研究科, 教授 2012: 九州工業大学, 情報工学研究院, 教授 2008 – 2012: Kyushu Institute of Technology, 大学院・情報工学研究院, 教授 2003 – 2007: 九州工業大学, 情報工学部, 教授 … More 2001 – 2002: RIKEN, Insutitute, Senior Scientist, 分子遺伝学研究室, 副主任研究員 2000: 理化学研究所, 細胞材料室, 副主任研究員 1999: 理化学研究所, 細胞材料開発室, 副主任研究員 1996 – 1998: 理化学研究所, ジーンバンク室, 副主任研究員 1995: 理化学研究所, ジーンバンク室・遺伝情報銀行, 副主任研究員 1994: 理化学研究所, ジーンバンク室, 副主任研究員 Less
Review Section/Research Field	Principal Investigator Biological Sciences / Functional biochemistry / Biological Sciences / ゲノム情報科学 / Science and Engineering Except Principal Investigator General medical chemistry / Biological Sciences / Cell biology
Keywords	Principal Investigator データベース / 転写因子 / ゲノム / 蛋白質・DNA認識 / 遺伝子発現制御 / バイオインフォマティクス / 相互作用 / 蛋白質 / 協同性 / 統合化 … More / 生体分子 / 熱力学 / DNA / 安定性 / 構造・機能相関 / 特異的認識 / ターゲット予測 / カロリメトリー / 分子認識 / DNA結合蛋白質 / Antisense / Computer simulation / Thermodynamics / Triplex DNA / アンチセンス / 計算機シミュレーション / 三重鎖DNA / ネットワーク / 未構造領域 / 進化 / 天然変性蛋白質 / 構造 / 分子構造 / 分子ネットワーク / 水 / 蛋白質の安定性 / 付加価値化 / 知識抽出 / 付加価値 / ゲノム解析 / cavity / 構造安定性 … More Except Principal Investigator p300 / MAZ / Zinc finger / Histone / GC rich element / Deacetylation / Acetylation / Triplex / リン酸化反応 / c-mysプロモーター / 相互作用 / コアクチベーター / ヒストン脱アセチル化 / SP1ファミリー / クロマチン / HAT活性 / コアクチベクター / 三重鎖結合因子 / c-mycプロモーター / zinc finger / ヒストン / GCリッチエレメント / 脱アセチル化 / アセチル化 / 三重鎖 / ヌクレオソーム / ポリメラーゼ / 蛋白質 / 生体分子 / 生物物理 / 生体生命情報学 / 分子動力学計算 / 遺伝子 / 転写因子 / Cdc2 / サイクリン / タンパク質リン酸化酵素 / Weel / 細胞関期 Less

Elucidation of information-processing mechanisms during transcription cycle using computational and information sciences
- Principal Investigator
  
  NAKAMURA Haruki
- Project Period (FY)
  2012 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Osaka University
天然変性蛋白質に関する情報の統合と解析Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2010 – 2011
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
Construction of Integrated Molecular Network Based on Interaction and Structural InformationPrincipal Investigator
- Principal Investigator
  
  SARAI Akinori
- Project Period (FY)
  2009 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  ゲノム情報科学
- Research Institution
  Kyushu Institute of Technology
ゲノムスケールでの転写制御ネットワークの解析Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2008 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
転写制御における協同性の網羅的解析Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2008 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
ゲノムスケールの転写因子とターゲット予測Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
転写制御における協同性の構造メカニズムPrincipal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
転写因子予測に基づく遺伝子発現制御メカニズムの解析Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
協同的転写制御の構造メカニズムの解明Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
生体分子統合データベース・解析システムの構築Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
蛋白質の安定性と相互作用における水の熱力学的役割Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Kyushu Institute of Technology
生体分子統合データベースの構築とそれに基づく情報解析Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
生体分子統合データベースの構築Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The Institute of Physical and Chemical Research
蛋白質・DNA認識における構造・特異性相関の研究Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  The Institute of Physical and Chemical Research
転写因子のターゲット予測と認識データベースPrincipal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  The Institute of Physical and Chemical Research
蛋白質、DNA認識における構造、特異性相関の研究Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  The Institute of Physical and Chemical Research
転写因子のターゲット予測と認識データベースPrincipal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  1999
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  The Institute of Physical and Chemical Research
Triplex-binding transcription factor MAZ and p300/CBP induce chromatin remodeling
- Principal Investigator
  
  YOKOYAMA Kazunari k.
- Project Period (FY)
  1999 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  General medical chemistry
- Research Institution
  RIKEN
DNA結合蛋白質の機能性cavityと立体構造安定性Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  1998
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  The Institute of Physical and Chemical Research
Mechanism of Triplex DNA Formation ; And Its Application to AntisensePrincipal Investigator
- Principal Investigator
  
  SARAI Akinori
- Project Period (FY)
  1997 – 2000
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Functional biochemistry
- Research Institution
  RIKEN Insutitute
Weelファミリータンパク質リン酸化酵素の機能ドメイン構造の解析
- Principal Investigator
  
  渡邉信元
- Project Period (FY)
  1996
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Cell biology
- Research Institution
  The Institute of Physical and Chemical Research
蛋白質とDNAの分子認識における構造的特性と熱力学的特性の相関Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  1995
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  The Institute of Physical and Chemical Research
蛋白質とDNAの分子認識における構造的特性と熱力学的特性の相関Principal Investigator
- Principal Investigator
  
  皿井明倫
- Project Period (FY)
  1994
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  The Institute of Physical and Chemical Research

All 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004 Other

All Journal Article Presentation

[Journal Article] NF-E2 p45 Activates Genes Involved in the Regulation of Platelet Function.2013
- Author(s)
  Rie Fujita, Mariko Takayama-Tsujimoto, Hironori Satoh, Laura Gutiérrez, Hiroyuki Aburatani, Satoshi Fujii, Akinori Sarai, Emery H. Bresnick, Masayuki Yamamoto, Hozumi Motohashi
- Journal Title
  
  Molecular and Cellular Biology
  
  Volume: 33 Pages: 2659-2670
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-24118008
[Journal Article] Analysis of Relationship among Evolvability, Thermodynamics and Function of Intrinsically Disordered Proteins/Regions2012
- Author(s)
  H. He and A. Sarai
- Journal Title
  
  Compt. Biol. Chem.
  
  Volume: 41 Pages: 51-57
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] A New Method for Evaluating the Specificity of Indirect Readout in Protein-DNA Recognition2012
- Author(s)
  S. Yamasaki, T. Terada, H. Kono, K. Shimizu and A. Sarai
- Journal Title
  
  Nucleic Acids Res
  
  Volume: 40 Issue: 17 Pages: e129-e129
- DOI
  10.1093/nar/gks462
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131, KAKENHI-PROJECT-22700317
[Journal Article] Prediction of dinucleotide-specific RNA-binding Sites in Proteins2011
- Author(s)
  M. Fernandez, Y. Kumagai, D. Standley, K. Mizuguchi, A. Sarai and S. Ahmad
- Journal Title
  
  BMC Bioiformatics 12(Suppl 13)
  
  Volume: S5
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] Prediction of dinucleotide-specific RNA-binding Sites in Proteins2011
- Author(s)
  M.Fernandez, Y.Kumagai, D.Standley, K.Mizuguchi, A.Sarai, S.Ahmad
- Journal Title
  
  BMC Bioiformatics
  
  Volume: 12 Issue: S13
- DOI
  10.1186/1471-2105-12-s13-s5
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131, KAKENHI-PROJECT-22500277
[Journal Article] Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction2011
- Author(s)
  H. Okayama, T. Kohno, Y. Ishii, Y. Shimada,S. Ahmad and A. Sarai
- Journal Title
  
  BMC Struct. Biol
  
  Volume: 11 Pages: 8-8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] Analysis of electric moments of RNA-binding proteins : implications for mechanism and prediction2011
- Author(s)
  S.Ahmad, A.Sarai
- Journal Title
  
  BMC Struct.Biol.
  
  Volume: 11 Issue: 1 Pages: 8-8
- DOI
  10.1186/1472-6807-11-8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] Thermodynamic Database for Proteins : Features and Applications2010
- Author(s)
  M.M.Gromiha, A.Sarai
- Journal Title
  
  Methods Mol.Biol.
  
  Volume: 609 Pages: 97-112
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-22113516
[Journal Article] CCR XP: Exploring clusters of conserved residues in protein structures2010
- Author(s)
  S. Ahmad, O. Keskin, K. Mizuguchi, A. Sarai and R. Nussinov
- Journal Title
  
  Nucleic Acids Res
  
  Volume: 38
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] CCR XP : Exploring clusters of conserved residues in protein structures2010
- Author(s)
  S.Ahmad, O.Keskin, K.Mizuguchi, A.Sarai, R.Nussinov
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 38
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] Prediction of mono-and dinucleotide-specific DNA-binding proteins using neural networks2009
- Author(s)
  M.Andrabi, K.Mizuguchi, A.Sarai, S.Ahmad
- Journal Title
  
  BMC Struct.Biol. 9
  
  Pages: 30-30
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016022
[Journal Article] MHC class II DR classification based on antigen-binding groove natural selection2009
- Author(s)
  S.Takeshima, A.Sarai, A.Saitou, Y.Aida
- Journal Title
  
  BMC Struct.Biol. 385
  
  Pages: 137-142
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20052021
[Journal Article] PrognoScan : a new database for meta-analysis of the prognostic value of genes2009
- Author(s)
  H.Mizuno, K.Kitada, K.Nakai, A.Sarai
- Journal Title
  
  BMC Medical Genomics 2
  
  Pages: 18-18
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016022
[Journal Article] A Generalized Conformational Energy Function of DNA Derived from Molecular Dyamics Simulations2009
- Author(s)
  S.Yamasaki, T.Terada, K.Shimizu, H.Kono, A.Sarai
- Journal Title
  
  Nuxleic Acids Res. 37
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20052021
[Journal Article] Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast2009
- Author(s)
  M.Fernandez, S.Fujii, H.Kono, A.Sarai
- Journal Title
  
  Genome Inform. 23
  
  Pages: 13-20
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast2009
- Author(s)
  M.Fernandez, S.fujii, H.Kono, A.Sarai
- Journal Title
  
  Genome Inform. 23
  
  Pages: 13-20
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016022
[Journal Article] A signature-based method for indexing cell cycle phase distribution from microarray profiles2009
- Author(s)
  H.Mizuno, Yo Nakanishi, N.Ishii, A.Sarai, K.Kitada
- Journal Title
  
  BMC Genomics 10
  
  Pages: 137-137
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] PrognoScan : a new database for meta-analysis of the prognostic value of genes2009
- Author(s)
  H.Mizuno, K.Kitada, K.Nakai, A.Sarai
- Journal Title
  
  BMC Medical Genomics 2
  
  Pages: 18-18
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20052021
[Journal Article] MHC class II DR classification based on antigen-binding groove natural selection2009
- Author(s)
  S.Takeshima, A.Sarai, A.Saitou, Y.Aida
- Journal Title
  
  Biochem. Biophys. Res.Comm. 385
  
  Pages: 137-142
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] A signature-based method for indexing cell cycle phase distribution from microarray profiles2009
- Author(s)
  H.Mizuno, Yo Nakanishi, N.Ishii, A.Sarai, K.Kitada
- Journal Title
  
  BMC Genomics 10
  
  Pages: 137-137
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20052021
[Journal Article] A signature-based method for indexing cell cycle phase distribution from microarray profiles2009
- Author(s)
  H.Mizuno, Yo Nakanishi, N.Ishii, A.Sarai, K.Kitada
- Journal Title
  
  BMC Genomics 10
  
  Pages: 137-137
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016022
[Journal Article] Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast2009
- Author(s)
  M. Fernandez, S. Fujii, H. Kono and A. Sarai
- Journal Title
  
  Genome Inform.
  
  Volume: 23 Pages: 13-20
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] A Generalized Conformational Energy Function of DNA Derived from Molecular Dynamics Simulations2009
- Author(s)
  S.Yamasaki, T.Terada, K.Shimizu, H.Kono, A.Sarai
- Journal Title
  
  Nucleic Acids Res. 37
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016022
[Journal Article] Prediction of mono- and dinucleotide-specific DNA-binding sites in proteins using neural networks2009
- Author(s)
  M.Andrabi, K.Mizuguchi, A.Sarai, S.Ahmad
- Journal Title
  
  BMC Struct. Biol. 9
  
  Pages: 30-30
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast2009
- Author(s)
  M.Fernandez, S.Fujii, H.Kono, A.Sarai
- Journal Title
  
  Genome Inform. 23
  
  Pages: 13-20
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20052021
[Journal Article] MHC class II DR classification based on antigen-binding groove natural selection2009
- Author(s)
  S.Takeshima, A.Sarai, A.Saitou, Y.Aida
- Journal Title
  
  Biochem.Biophys.Res.Comm. 385
  
  Pages: 137-142
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016022
[Journal Article] A Generalized Conformational Energy Function of DNA Derived from Molecular Dynamics Simulations2009
- Author(s)
  S.Yamasaki, T.Terada, K.Shimizu, H.Kono, A.Sarai
- Journal Title
  
  Nucleic Acids Res. 37
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] PrognoScan : a new database for meta-analysis of the prognostic value of genes2009
- Author(s)
  H.Mizuno, K.Kitada, K.Nakai, A.Sarai
- Journal Title
  
  BMC Medical Genomics 2
  
  Pages: 18-18
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] Prediction of mono-and dinucleotide-specfic DNA-binding sites in proteins using neural networks2009
- Author(s)
  M.Andrabi, K.Mizuguchi, A.Sarai, S.Ahmad
- Journal Title
  
  BMC Struct.Biol. 9
  
  Pages: 30-30
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20052021
[Journal Article] Prediction of mono- and dinucleotide-specific DNA- binding sites in proteins using neural networks2009
- Author(s)
  M. Andrabi, K. Mizuguchi, A. Sarai and S. Ahmad
- Journal Title
  
  BMC Struct. Biol
  
  Volume: 9 Pages: 30-30
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21310131
[Journal Article] uORFs, reinitiation and alternative translation start sites in human mRNAs2008
- Author(s)
  A.V. Kochetov, S. Ahmad, V.I. Ivanisenko, N. A. Kolchanovand A. Sarai
- Journal Title
  
  FEBS Lett 582
  
  Pages: 1293-1297
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016022
[Journal Article] Sequence-based prediction of residue-level properties in proteins2008
- Author(s)
  S. Ahmad, Y. H. Singh, M. J. Araitzo-Bravo, A. Sarai
- Journal Title
  
  Machine Learning in Bioinformatics Chap. 7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20052021
[Journal Article] Protein-DNA interactions : Structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins2008
- Author(s)
  S. Ahmad, O. Keskin, A. Sarai and R. Nussino V
- Journal Title
  
  Nucleic Acids Res 36
  
  Pages: 5922-5932
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20052021
[Journal Article] Protein-DNA interactions : Structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins2008
- Author(s)
  S. Ahmad, O. Keskin, A. Sarai and R. Nussinov
- Journal Title
  
  Nucleic Acids Res 36
  
  Pages: 5922-5932
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016022
[Journal Article] uORFs, reinitiation and alternative translation start sites in human mRNAs2008
- Author(s)
  A.V. Kochetov, S. Ahmad, V.I. Ivanisenko, N. A. Kolchanovand A. Sarai
- Journal Title
  
  FEBS Lett 582
  
  Pages: 1293-1297
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20052021
[Journal Article] △G-based prediction and experimental confirmation of SYCRP I-binding sites on Synechocystis genome2008
- Author(s)
  K. Omagari, H. Yoshimura, T. Suzuki, M. Takano, M. Ohmori, and A. Sarai
- Journal Title
  
  FEBS J. 275
  
  Pages: 4786-4795
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016022
[Journal Article] △G-based prediction and experimental confirmation of SYCRP1-binding sites on Synechocystis genome2008
- Author(s)
  K. Omagari, H. Yoshimura, T. Suzuki, M. Takano, M. Ohmori, and A. Sarai
- Journal Title
  
  FEBS J. 275
  
  Pages: 4786-4795
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20052021
[Journal Article] Sequence-based prediction of residue-level properties in proteins2008
- Author(s)
  S. Ahmad, Y. H. Singh, M. J. Aranzo-Bravo, A. Sarai
- Journal Title
  
  Machine Learning in Bioinformatics Chap. 7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016022
[Journal Article] Sequence-Dependent DNA Deformability Studied using Molecular Dynamics Simulations2007
- Author(s)
  S. Fujii, H. Kono, S. Takenaka, N. Go and A. Sarai
- Journal Title
  
  Nucleic Acids Res. doi:10.1093
  
  Pages: 1-12
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18055026
[Journal Article] Sequence-Dependent DNA Deformability Studied using Molecular Dynamics Simulations2007
- Author(s)
  S. Fujii, H. Kono, S. Takenaka, N. Go and A. Sarai
- Journal Title
  
  Nucleic Acids Res. doi:10.1093
  
  Pages: 1-12
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18016026
[Journal Article] DNA deformability and hydration studied by molecular dynamics simulation2007
- Author(s)
  Y. Yonetani, H. Kono, S. Fujii, A. Sarai, and N. Go
- Journal Title
  
  Mol. Simulation 33
  
  Pages: 103-107
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18016026
[Journal Article] Role of DNA Conformational Change in the Specificity of Drug-DNA Recognition2007
- Author(s)
  M. J. Arauzo-Bravo and A. Sarai
- Journal Title
  
  Nucleic Acids Res. doi:10.1093/nar/gkm892
  
  Pages: 1-11
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18016026
[Journal Article] DNA deformability and hydration studied by molecular dynamics simulation2007
- Author(s)
  Y. Yonetani, H. Kono, S. Fujii, A. Sarai, and N. Go
- Journal Title
  
  Mol. Simulation 33
  
  Pages: 103-107
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18055026
[Journal Article] Role of DNA Conformational Change in the Specificity of Drug-DNA Recognition2007
- Author(s)
  M. J. Arauzo-Bravo and A. Sarai
- Journal Title
  
  Nucleic Acids Res. doi:10.1093/nar/gkm892
  
  Pages: 1-11
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18055026
[Journal Article] ReadOut : Structure-based Calculation of Direct and Indirect Readout Energies and Specificities for Protein-DNA Recognition2006
- Author(s)
  S.Ahmad, H.Kono, M.J.Arauzo-Bravo, A.Sarai
- Journal Title
  
  Nucleic Acids Res. 34
- Data Source
  KAKENHI-PROJECT-18055026
[Journal Article] Atom-wise Statistics and Prediction of Solvent Accessibility in Proteins2006
- Author(s)
  Y.H.Singh, M.M.Gromiha, A.Sarai, S.Ahmad
- Journal Title
  
  Biophys. Chem. 124
  
  Pages: 145-154
- Data Source
  KAKENHI-PROJECT-18016026
[Journal Article] Dimensionality of amino acid space and solvent accessibility prediction with neural networks2006
- Author(s)
  M.J.Arauzo-Bravo, S.Ahmad, A.Sarai
- Journal Title
  
  Compt. Biol. Chem. 30
  
  Pages: 160-168
- Data Source
  KAKENHI-PROJECT-18016026
[Journal Article] Dimensionality of amino acid space and solvent accessibility prediction with neural networks2006
- Author(s)
  M.J.Arauzo-Bravo, S.Ahmad, A.Sarai
- Journal Title
  
  Compt. Biol. Chem. 30
  
  Pages: 160-168
- Data Source
  KAKENHI-PROJECT-18055026
[Journal Article] ProTherm and ProNIT : Thermodynamic Databases for Proteins and Protein-Nucleic Acid Interactions2006
- Author(s)
  M.D.Shaji Kumar, K.A.Bava, M.M.Gromiha, P.Prabakaran, K.Kitajima, H.Uedaira, A.Sarai
- Journal Title
  
  Nucleic Acids Res. 34
- Data Source
  KAKENHI-PROJECT-17054031
[Journal Article] ProTherm and ProNIT : Thermodynamic Databases for Proteins and Protein-Nucleic Acid Interactions2006
- Author(s)
  M.D.Shaji Kumar, K.A.Bava, M.M.Gromiha, P.Prabakaran, K.Kitajima, H.Uedaira, A.Sarai
- Journal Title
  
  Nucleic Acids Res. 34
- Data Source
  KAKENHI-PROJECT-16041235
[Journal Article] Atom-wise Statistics and Prediction of Solvent Accessibility in Proteins2006
- Author(s)
  Y.H.Singh, M.M.Gromiha, A.Sarai, S.Ahmad
- Journal Title
  
  Biophys. Chem. 124
  
  Pages: 145-154
- Data Source
  KAKENHI-PROJECT-18055026
[Journal Article] Classification of Protein-DNA Complexes Based on Structural Descriptors2006
- Author(s)
  Prabakaran, J.G., Siebers, S., Ahmad, M.M., Gromiha, M.G., Singarayan, A.Sarai
- Journal Title
  
  Structure 14
  
  Pages: 1355-1367
- Data Source
  KAKENHI-PROJECT-18055026
[Journal Article] ReadOut : Structure-based Calculation of Direct and Indirect Readout Energies and Specificities for Protein-DNA Recognition2006
- Author(s)
  S.Ahmad, H.Kono, M.J.Arauzo-Bravo, A.Sarai
- Journal Title
  
  Nucleic Acids Res. 34
- Data Source
  KAKENHI-PROJECT-18016026
[Journal Article] Classification of Protein-DNA Complexes Based on Structural Descriptors2006
- Author(s)
  Prabakaran, J.G.Siebers, S.Ahmad, M.M.Gromiha, M.G.Singarayan, A.Sarai
- Journal Title
  
  Structure 14
  
  Pages: 1355-1367
- Data Source
  KAKENHI-PROJECT-18016026
[Journal Article] ProTherm and ProNIT : Thermodynamic Databases for Proteins and Protein-Nucleic Acid Interactions2006
- Author(s)
  M.D.Shaji Kumar, K.A.Bava, M.M.Gromiha, P.Prabakaran, K.Kitajima, H.Uedaira, A.Sarai
- Journal Title
  
  Nucleic Acids Res. 34
- Data Source
  KAKENHI-PROJECT-17017030
[Journal Article] Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations : Toward Understanding the Indirect Readout Mechanism in Protein-DNA Recognition2005
- Author(s)
  M.J.Arauzo-Bravo, S.Ahmad, S.Fujii, H.Kono, A.Sarai
- Journal Title
  
  J.Am.Chem.Soc. 127
  
  Pages: 16074-16089
- Data Source
  KAKENHI-PROJECT-17017030
[Journal Article] PSSM-based prediction of DNA binding sites in proteins2005
- Author(s)
  S.Ahmad, A.Sarai
- Journal Title
  
  BMC Bioinformatics 6
  
  Pages: 33-33
- Data Source
  KAKENHI-PROJECT-17017030
[Journal Article] Protein-DNA Recognition Patterns and Predictions2005
- Author(s)
  A.Sarai, H.Kono
- Journal Title
  
  Ann.Rev.Biophys.Biomol.Struct. 34
  
  Pages: 379-398
- Data Source
  KAKENHI-PROJECT-16014219
[Journal Article] The role of alternative translation start sites in the generation of human protein diversity2005
- Author(s)
  A.V.Kochetov, A.Sarai, V.K.Shumny, N.A.Kolchanov
- Journal Title
  
  Mol.Genetics and Genomics 273
  
  Pages: 491-496
- Data Source
  KAKENHI-PROJECT-17017030
[Journal Article] Protein-DNA Recognition Patterns and Predictions2005
- Author(s)
  A.Sarai, H.Kono
- Journal Title
  
  Ann.Rev.Biophys.Biomol.Struct. 34
  
  Pages: 379-398
- Data Source
  KAKENHI-PROJECT-17017030
[Journal Article] Integration of Bioinformatics and Computational Biology to Understand Protein-DNA Recognition Mechanism2005
- Author(s)
  A.Sarai, J.Siebers, S.Selvaraj, M.M.Gromiha, H.Kono
- Journal Title
  
  J.Bioinf.Compt.Biol. 3
  
  Pages: 169-183
- Data Source
  KAKENHI-PROJECT-16041235
[Journal Article] Protein-DNA Recognition Patterns and Predictions2005
- Author(s)
  A.Sarai, H.Kono
- Journal Title
  
  Ann.Rev.Biophys.Biomol.Struct. 34
  
  Pages: 379-398
- Data Source
  KAKENHI-PROJECT-16041235
[Journal Article] PSSM-based prediction of DNA binding sites in proteins2005
- Author(s)
  S.Ahmad, A.Sarai
- Journal Title
  
  BMC Bioinformatics 6
  
  Pages: 33-33
- Data Source
  KAKENHI-PROJECT-17054031
[Journal Article] PSSM-based prediction of DNA binding sites in proteins2005
- Author(s)
  S.Ahmad, A.Sarai
- Journal Title
  
  BMC Bioinformatics 6
  
  Pages: 33-33
- Data Source
  KAKENHI-PROJECT-16041235
[Journal Article] PSSM-based prediction of DNA binding sites in proteins2005
- Author(s)
  S.Ahmad, A.Sarai
- Journal Title
  
  IBMC Bioinformatics 6
  
  Pages: 33-33
- Data Source
  KAKENHI-PROJECT-16014219
[Journal Article] Protein-DNA Recognition Patterns and Predictions2005
- Author(s)
  A.Sarai, H.Kono
- Journal Title
  
  Ann.Rev.Biophys.Biomol.Struct. 34
  
  Pages: 379-398
- Data Source
  KAKENHI-PROJECT-17054031
[Journal Article] Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations : Toward Understanding the Indirect Readout Mechanism in Protein-DNA Recognition2005
- Author(s)
  M.J.Arauzo-Bravo, S.Ahmad, S.Fujii, H.Kono, A.Sarai
- Journal Title
  
  J.Am.Chem.Soc. 127
  
  Pages: 16074-16089
- Data Source
  KAKENHI-PROJECT-17054031
[Journal Article] Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations : Toward Understanding the Indirect Readout Mechanism in Protein-DNA Recognition2005
- Author(s)
  M.J.Arauzo-Bravo, S.Ahmad, S.Fujii, H.Kono, A.Sarai
- Journal Title
  
  J.Am.Chem.Soc. 127
  
  Pages: 16074-16089
- Data Source
  KAKENHI-PROJECT-16041235
[Journal Article] The role of alternative translation start sites in the generation of human protein diversity2005
- Author(s)
  A.V.Kochetov, A.Sarai, V.K.Shumny, N.A.Kolchanov
- Journal Title
  
  Mol.Genetics and Genomics 273
  
  Pages: 491-496
- Data Source
  KAKENHI-PROJECT-17054031
[Journal Article] ASAView : Database and tool for solvent accessibility representation in proteins2004
- Author(s)
  S.Ahmad, M.M.Gromiha, H.Fawareh, A.Sarai
- Journal Title
  
  BMC Bioinformatics 5
  
  Pages: 51-51
- Data Source
  KAKENHI-PROJECT-16014219
[Journal Article] Thermal stability and function of Myb protein2004
- Author(s)
  H.Uedaira, A.Sarai
- Journal Title
  
  Comprehensive Handbook of Calorimetry and Thermal Analysis
  
  Pages: 422-424
- Data Source
  KAKENHI-PROJECT-16041235
[Journal Article] Qgrid : Clustering tool for detecting charged and hydrophobic regions in proteins2004
- Author(s)
  S.Ahmad, A.Sarai
- Journal Title
  
  Nucleic Acids Res. 32
- Data Source
  KAKENHI-PROJECT-16014219
[Journal Article] Thermodynamic database for biomolecules2004
- Author(s)
  H.Uedaira, A.Sarai
- Journal Title
  
  Comprehensive Handbook of Calorimetry and Thermal Analysis
  
  Pages: 276-279
- Data Source
  KAKENHI-PROJECT-16041235
[Journal Article] Thermal stability and function of Myb protein2004
- Author(s)
  A.Sarai, P Prabakaran, H.Uedaira
- Journal Title
  
  Comprehensive Handbook of Calorimetry and Thermal Analysis
  
  Pages: 280-284
- Data Source
  KAKENHI-PROJECT-16041235
[Journal Article] Intermolecular and Intramolecular Readout Mechanisms in Protein-DNA Recognition2004
- Author(s)
  M.M.Gromiha, J.G.Siebers, S.Selvaraj, H.Mono, A.Sarai
- Journal Title
  
  J.Mol.Biol. 337
  
  Pages: 285-294
- Data Source
  KAKENHI-PROJECT-16014219
[Journal Article] Intermolecular and Intramolecular Readout Mechanisms in Protein-DNA Recognition2004
- Author(s)
  M.M.Gromiha, J.G.Siebers, S.Selvaraj, H.Kono, A.Sarai
- Journal Title
  
  J.Mol.Biol. 337
  
  Pages: 285-294
- Data Source
  KAKENHI-PROJECT-16041235
[Journal Article] Moment-based Prediction of DNA-binding Proteins2004
- Author(s)
  S.Ahmad, A.Sarai
- Journal Title
  
  J.Mol.Biol. 65-71
  
  Pages: 65-71
- Data Source
  KAKENHI-PROJECT-16014219
[Journal Article] Analysis of Relationship among Evolvability, Thermodynamics and Function of Intrinsically Disordered Proteins/Regions
- Author(s)
  H.He, A.Sarai
- Journal Title
  
  Compt.Biol.Chem.
  
  Volume: (掲載確定)
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-22113516
[Presentation] Biophysics of molecular interaction network2013
- Author(s)
  A. Sarai
- Organizer
  The First BMIRC International Symposium on Frontiers in Computational Systems Biology and Bioengineering
- Place of Presentation
  飯塚
- Invited
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Analysis of Domain and Non-Domain Interactions in Protein-Protein Interaction Network2012
- Author(s)
  Satoshi Komori, Satoshi Fujii and Akinori Sarai
- Organizer
  生命医薬情報学連合大会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Integration of Structural and Biochemical Information into Protein Interaction Network2012
- Author(s)
  Yuji Kawakami, Satoshi Fujii and Akinori Sarai
- Organizer
  第50回日本生物物理学会年会
- Place of Presentation
  名古屋
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Analysis of Domain and Non-Domain Interactions in Protein-Protein Interaction Network2012
- Author(s)
  Satoshi Komori, Satoshi Fujii and Akinori Sarai
- Organizer
  第50回日本生物物理学会年会
- Place of Presentation
  名古屋
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] The influence of solvent condition on DNA structures studied by molecular dynamics simulations2012
- Author(s)
  Satoshi Fujii, Hidetoshi Kono, Akinori Sarai
- Organizer
  第50回日本生物物理学会年会
- Place of Presentation
  名古屋大学
- Data Source
  KAKENHI-PLANNED-24118008
[Presentation] Analysis of Transcriptional Regulation Network of Yeast2012
- Author(s)
  Kazumasa Yada, Satoshi Fujii, Akinori Sarai
- Organizer
  生命医薬情報学連合大会
- Place of Presentation
  タワーホール船堀（東京都江戸川区）
- Data Source
  KAKENHI-PLANNED-24118008
[Presentation] A New Method for Evaluating the Specificity of Indirect Readout in Protein-DNA Recognition2012
- Author(s)
  S. Yamasaki, T. Terada, H. Kono, K. Shimizu, A. Sarai
- Organizer
  European Conference on Computational Biology
- Place of Presentation
  Basel, Switzerland
- Data Source
  KAKENHI-PLANNED-24118008
[Presentation] Ion distribution in the EcoRV(restriction enzyme)-DNA complexcalculated by using 3D-RISM2012
- Author(s)
  J.Yasuniwa, Y. Maruyama, N. Yoshida, A. Sarai, F. Hirata, M. Irisa
- Organizer
  Foundations of Molecular Modeling and Simulation
- Place of Presentation
  Mt. Hood, Oregon, USA
- Data Source
  KAKENHI-PLANNED-24118008
[Presentation] Integration of Structural and Biochemical Information into Protein Interaction Network2012
- Author(s)
  Yuji Kawakami, Satoshi Fujii and Akinori Sarai
- Organizer
  生命医薬情報学連合大会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] A New Method for Evaluating the Specificity of Indirect Readout in Protein-DNA Recognition2012
- Author(s)
  S. Yamasaki, T. Terada, H. Kono, K.Shimizu, and A. Sarai
- Organizer
  European Conference on Computational Biology
- Place of Presentation
  Basel, Switzerland
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] The influence of solvent condition on DNA structures studied by molecular dynamics simulations2012
- Author(s)
  Satoshi Fujii, Hidetoshi Kono and Akinori Sarai
- Organizer
  第50回日本生物物理学会年会
- Place of Presentation
  名古屋
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] 3D-RISMを用いた酵素-DNA 複合体中の水和水分布計算2012
- Author(s)
  本松良太, 安庭潤治, 丸山豊, 吉田紀生, 皿井明倫, 平田文男, 入佐正幸
- Organizer
  第35回溶液化学シンポジウム
- Place of Presentation
  早稲田大学（東京）
- Data Source
  KAKENHI-PLANNED-24118008
[Presentation] Intrinsically disordered proteins/regions : an important factor in protein evolvability2011
- Author(s)
  He Huang, Akinori Sarai
- Organizer
  19th ISMB/10th ECCB Annual International Conference
- Place of Presentation
  Wien, Austria
- Data Source
  KAKENHI-PUBLICLY-22113516
[Presentation] Analysis of relationship among evolvability, thermodynamic characteristics and function of intrinsically disordered proteins/regions2011
- Author(s)
  He Huang, Akinori Sarai
- Organizer
  第49回日本生物物理学会年会
- Place of Presentation
  姫路
- Data Source
  KAKENHI-PUBLICLY-22113516
[Presentation] Construction and Analysis of Protein-Protein Interaction Network Based on Domain and Non-Domain Interactions2011
- Author(s)
  Satoshi Komori, Satoshi Fujii, Akinori Sarai
- Organizer
  CBI/JSBi2011合同大会
- Place of Presentation
  神戸
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Integration of Structural and Biochemical Information into Protein Interaction Network2011
- Author(s)
  Yuji Kawakami, Satoshi Fujii, Akinori Sarai
- Organizer
  CBI/JSBi2011合同大会
- Place of Presentation
  神戸
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Construction and Analysis of Biomolecular Network based on Domain Structures2010
- Author(s)
  Yukari Hayashi, Satoshi Fujii, Akinori Sarai
- Organizer
  2010年日本バイオインフォマティクス学会年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Thermodynamic analyses of intrinsically disordered proteins2010
- Author(s)
  黄鶴、皿井明倫
- Organizer
  第48回日本生物物理学会年会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PUBLICLY-22113516
[Presentation] Construction and Analysis of Biomolecular Network in Structurome2010
- Author(s)
  Yukari Hayashi, Satoshi Fujii, Akinori Sarai
- Organizer
  第48回日本生物物理学会年会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Evolutionary and thermodynamic analyses of intrinsically disordered proteins2010
- Author(s)
  Huang He, Akinori Sarai
- Organizer
  2010年日本バイオインフォマティクス学会年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PUBLICLY-22113516
[Presentation] Motif Analysis of Transcription Factors in Regulatory Region2009
- Author(s)
  T.Sakai, S.Fujii, A.Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] ベイズ統計学的解釈によるタンパク質-DNA認識におけるindirect readoutの評価2009
- Author(s)
  山崎智, 福井一彦, 河野秀俊, 清水謙多郎, 皿井明倫, 寺田透
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] ストラクチュロームにおける分子ネットワークの系統的解析2009
- Author(s)
  Mitsuaki Ohtsuaka, Satoshi Fujii, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Protein-DNA Recognition Mechanism and Prediction2009
- Author(s)
  A.Sarai
- Organizer
  Albany 2009 : the 16th Conversation
- Place of Presentation
  Albany, NY, USA
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Protein-DNA Recognition Mechanism and Prediction2009
- Author(s)
  A.Sarai
- Organizer
  Albany 2009 : The 16th Conversation
- Place of Presentation
  Albany, NY, USA
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] 構造情報に基づく蛋白質・DNA認識における協同性の解析2009
- Author(s)
  A.Tanaka, S.Fujii, H.Kono, A.Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast2009
- Author(s)
  M.Fernandez, S.Fujii, H.Kono, A.Sarai
- Organizer
  GIW2009
- Place of Presentation
  Yokohama
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] 未構造タンパク質の機能的進化的特性:生物種特異的解析2009
- Author(s)
  黄鶴、皿井明倫
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Stability, Dynamics and Cooperativity of Protein-DNA Interactions2009
- Author(s)
  A.Sarai
- Organizer
  International Symposium on Multi-Scale Dynamics of Protein Complex Formation and Function
- Place of Presentation
  Tokyo
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] 生体分子の熱力学データと構造データの統合2009
- Author(s)
  皿井明倫、Shaji Kumar
- Organizer
  文科省統合データベースプロジェクトシンポジウム「データベースが拓くこれらのライフサイエンス」
- Place of Presentation
  東京
- Year and Date
  2009-06-12
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Kinase Inhibition modeling by Proteometrics and docking analysis2009
- Author(s)
  Michael Fernandez, Ahmad Shandar, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Construction and Analysis of Biomolecular Network based on Domain Structures2009
- Author(s)
  Yukari Hayashi, Satoshi Fujii, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] 転写因子のゲノヘスケールでのターケット予測:相互作用情報を用いた方法2009
- Author(s)
  大庭宏明、藤井聡、皿井明倫
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] The effect of environment on the conformational transition of DNA Studied by molecular dynamics simulations2009
- Author(s)
  Satoshi Fujii, Hidetoshi Kono, Nobuhiro Go, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] 転写因子のゲノムスケールでのターゲット予測:相互作用情報を用いた方法2009
- Author(s)
  大庭宏明、藤井聡、皿井明倫
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Kinase Inhibition modeling by Proteometrics and docking analysis2009
- Author(s)
  Michael Fernandez, Ahmad Shandar, Akinori Sarai
- Organizer
  CBI-KSBSB Joint Conference
- Place of Presentation
  Busan, Korea
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Construction and Analysis of Biomolecular Network based on Domain Structures2009
- Author(s)
  Yukari Hayashi, Satoshi Fujii, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Kinase Inhibition modeling by Proteometrics and docking analysis2009
- Author(s)
  Michael Fernandez, Ahmad Shandar, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Kinase Inhibition modeling by Proteometrics and docking analysis2009
- Author(s)
  Michael Fernandez, Ahmad Shandar, Akinori Sarai
- Organizer
  CBI-KSBSB Joint Conference
- Place of Presentation
  Busan, Korea
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] 生体分子の熱力学データと構造データの統合2009
- Author(s)
  皿井明倫、Shaji Kumar
- Organizer
  文科省統合データベースプロジェクトシンポジウム「データベースが拓くこれからのライフサイエンス」
- Place of Presentation
  東京
- Year and Date
  2009-06-12
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Recognition of protease inhibition pattern using topological interaction matrix and genetic algorithm-optimized support vector machines2009
- Author(s)
  M. Fernandez, S. Ahmad, and A. Sarai
- Organizer
  PRIB2008
- Place of Presentation
  Melbourne, Australia
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Stability, Dynamics and Cooperativity of Protein-DNA Interactions2009
- Author(s)
  A.Sarai
- Organizer
  International Symposium on Multi-Scale Dynamics of Protein Complex Formation and Function
- Place of Presentation
  Tokyo
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] 未構造タンパク質の機能的進化的特性:生物種特異的解析2009
- Author(s)
  黄鶴、皿井明倫
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] The effect of environment on the conformational transition of DNA studied by molecular dynamics simulations2009
- Author(s)
  Satoshi Fujii, Hidetoshi Kono, Nobuhiro Go, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] ベイズ統計学的解釈によるタンパク質-DNA認識におけるindirect readoutの評価2009
- Author(s)
  山崎智, 福井一彦, 河野秀俊, 清水謙多郎, 皿井明倫, 寺田透
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] 生体分子の熱力学データと構造データの統合2009
- Author(s)
  皿井明倫、Shaji Kumar
- Organizer
  文科省統合データベースプロジェクトシンポジウム「データベースが拓くこれからのライフサイエンス」
- Place of Presentation
  東京
- Year and Date
  2009-06-12
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] The effect of environment on the conformational transition of DNA studied by molecular dynamics simulations2009
- Author(s)
  Satoshi Fujii, Hidetoshi Kono, Nobuhiro Go, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] 構造情報に基づく蛋白質・DNA認識における協同性の解析2009
- Author(s)
  A.Tanaka, S.Fujii, H.Kono, A.Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] ストラクチュロームにおける分子ネットワークの系統的解析2009
- Author(s)
  Mitsuaki Ohtsuaka, Satoshi Fujii, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] ストラクチュロームにおける分子ネットワークの系統的解析2009
- Author(s)
  Mitsuaki Ohtsuaka, Satoshi Fujii, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Electric moments of RNA-binding proteins2009
- Author(s)
  S. Ahmad and A. Sarai
- Organizer
  ISMB2008
- Place of Presentation
  Toronto, Canada
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Motif Analysis of Transcription Factors in Regulatory Region2009
- Author(s)
  T.Sakai, S.Fujii, A.Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] 未構造タンパク質の機能的進化的特性 : 生物種特異的解析2009
- Author(s)
  黄鶴、皿井明倫
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Analysis of Biomolecular Network in Structurome2009
- Author(s)
  M.Ohtsuaka, S.Fujii, Akinori Sarai
- Organizer
  ISMB/ECCB 2009
- Place of Presentation
  Skockholm, Sweden
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Motif Analysis of Transcription Factors in Regulatory Region2009
- Author(s)
  T.Sakai, S.Fujii, A.Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Kinase Inhibition modeling by Proteometrics and docking analysis2009
- Author(s)
  Michael Fernandez, Ahmad Shandar, Akinori Sarai
- Organizer
  CBI-KSBSB Joint Conference
- Place of Presentation
  Busan, Korea
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Analysis of Biomolecular Network in Structurome2009
- Author(s)
  M.Ohtsuaka, S.Fujii, Akinori Sarai
- Organizer
  ISMB/ECCB 2009
- Place of Presentation
  Skockholm, Sweden
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Stability, Dynamics and Cooperativity of Protein-DNA Interactions2009
- Author(s)
  A.Sarai
- Organizer
  International Symposium on Multi-Scale Dynamics of Protein Complex Formation and Function
- Place of Presentation
  Tokyo
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Protein-DNA Recognition Mechanism and Prediction2009
- Author(s)
  A.Sarai
- Organizer
  Albany 2009 : The 16th Conversation
- Place of Presentation
  Albany, NY, USA
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast2009
- Author(s)
  M.Fernandez, S.Fujii, H.Kono, A.Sarai
- Organizer
  GIW2009
- Place of Presentation
  Yokohama
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Kinase Inhibition modeling by Proteometrics and docking analysis2009
- Author(s)
  Michael Fernandez, Ahmad Shandar, Akinori Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] 転写因子のゲノムスケールでのターゲット予測 : 相互作用情報を用いた方法2009
- Author(s)
  大庭宏明、藤井聡、皿井明倫
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] 構造情報に基づく蛋白質・DNA認識における協同性の解析2009
- Author(s)
  A.Tanaka, S.Fujii, H.Kono, A.Sarai
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] ベイズ統計学的解釈によるタンパク質-DNA認識におけるindirect readoutの評価2009
- Author(s)
  山崎智, 福井一彦, 河野秀俊, 清水謙多郎, 皿井明倫, 寺田透
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-21310131
[Presentation] Analysis of Biomolecular Network in Structurome2009
- Author(s)
  M.Ohtsuaka, S.Fujii, Akinori Sarai
- Organizer
  ISMB/ECCB 2009
- Place of Presentation
  Skockholm, Sweden
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast2009
- Author(s)
  M.Fernandez, S.Fujii, H.Kono, A.Sarai
- Organizer
  GIW2009
- Place of Presentation
  Yokohama
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Role of electric moments in RNA-recognition by proteins2008
- Author(s)
  S. Ahmad and A. Sarai
- Organizer
  日本バイオインフォマティクス学会年会
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Analysis of environment-dependent conformational transition of DNA by molecular dynamics simulations2008
- Author(s)
  S. Fujii, H. Kono, N. Go and A. Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] ProNIT : Database Development and Integration2008
- Author(s)
  M.D. Shaji Kumar, P. Prabakaran, M.M. Gromiha, H. Uedaira, K. Kitajima, and A. Sarai
- Organizer
  日本バイオインフォマティクス学会年会
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Role of electric moments in RNA-recognition by proteins2008
- Author(s)
  S. Ahmad and A. Sarai
- Organizer
  日本バイオインフォマティクス学会年会
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Electric moments of RNA-binding proteins2008
- Author(s)
  S. Ahmad and A. Sarai
- Organizer
  ISMB2008
- Place of Presentation
  Toronto, Canada
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Analysis of Biomolecular Network in Structurome2008
- Author(s)
  M. Ohtsuka, S. Fujii and Akinori Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Ligand-target data modeling using Genetic Algorithm-optimized Bayesian Regularized Neural Networks and Support Vectors Machines2008
- Author(s)
  M. Fernandez, A. Sarai and J. Caballero
- Organizer
  IASC 2008
- Place of Presentation
  Yokohama, Japan
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Recognition of protease inhibition pattern using topological interaction matrix and genetic algorithm-optimized support vector machines2008
- Author(s)
  M. Fernandez, S. Ahmad, and A. Sarai
- Organizer
  PRIB2008
- Place of Presentation
  Melbourne, Australia
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Proteometric Modeling of Protein Conformational Stability using Amino Acid Sequence Autocorrelation Vectors and Sumport Vector Machines2008
- Author(s)
  M. Fernandez, S. Ahmad, and A. Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Integration of Thermodynamic and Structural Data2008
- Author(s)
  A. Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] A New DNA-deformation energy function taking account of the anharmonicity of the conformational distribution2008
- Author(s)
  S. Yamasaki, T. Terada, K. Shimizu, H. Kono and A. Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Genome-wide prediction of target of transcriptional factor with interaction data2008
- Author(s)
  H. Ohba, A. Sarai and S. Fujii
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Analysis of Biomolecular Network in Structurome2008
- Author(s)
  M. Ohtsuka, S. Fujii and Akinori Sarai
- Organizer
  日本バイオインフォマティクス学会年会
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Evaluation of dinucleotide intramolecular interactions on nucleosome positioning2008
- Author(s)
  M. Fernandez, S. Fujii, H. Kono, and Akinori Sarai
- Organizer
  日本バイオインフォマティクス学会年会
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Analyses of Functional and Evolutionary Characteristics of Disordered Proteins2008
- Author(s)
  H. Huang, and A. Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Analysis of Biomolecular Network in Structurome2008
- Author(s)
  M. Ohtsuka, S. Fujii and Akinori Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Genome-wide prediction of target of transcriptional factor with interaction data2008
- Author(s)
  H. Ohba, A. Sarai and S. Fujii
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Prediction of base-specific contacts and contact-types in DNA-binding proteins2008
- Author(s)
  M. Andrabi, K. Mizuguchi, A. Sarai and S. Ahmad
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Analysis of Biomolecular Network in Structurome2008
- Author(s)
  M. Ohtsuka, S. Fujii and Akinori Sarai
- Organizer
  日本バイオインフォマティクス学会年会
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Analysis of environment-dependent conformational transition of DNA by molecular dynamics simulations2008
- Author(s)
  S. Fujii, H. Kono, N. Go and A. Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Prediction of base-specific contacts and contact-types in DNA-binding proteins2008
- Author(s)
  M. Andrabi, K. Mizuguchi, A. Sarai and S. Ahmad
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Sequence-dependent DNA deformability and hydtration studied by molecular dynamics simulations2008
- Author(s)
  Y. Yonetani, S. Fujii, A. Sarai, H. Kono, and N. Go
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Analyses of Functional and Evolutionary Characteristics of Disordered Proteins2008
- Author(s)
  H. Huang, and A. Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Evaluation of dinucleotide intramolecular interactions on nucleosome Dositioning2008
- Author(s)
  M. Fernandez, S. Fujii, H. Kono, and Akinori Sarai
- Organizer
  日本バイオインフォマティクス学会年会
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] ProNIT : Database Development and Integration2008
- Author(s)
  M.D. Shaji Kumar, P. Prabakaran, M.M. Gromiha, H. Uedaira, K. Kitajima, and A. Sarai
- Organizer
  日本バイオインフォマティクス学会年会
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Sequence-dependent DNA deformability and hydtration studied by molecular dynamics simulations2008
- Author(s)
  Y. Yonetani, S. Fujii, A. Sarai, H. Kono, and N. Go
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Integration of Thermodynamic and Structural Data2008
- Author(s)
  A. Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] A New DNA-deformation energy function taking account of the anharmonicity of the conformational distribution2008
- Author(s)
  S. Yamasaki, T. Terada, K. Shimizu, H. Kono and A. Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20052021
[Presentation] Proteometric Modeling of Protein Conformational Stability using Amino Acid Seauence Autocorrelation Vectors and Support Vector Machines2008
- Author(s)
  M. Fernandez, S. Ahmad, and A. Sarai
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Ligand-target data modeling using Genetic Algorithm-optimized Bayesian Regularized Neural Networks and Support Vectors Machines2008
- Author(s)
  M. Fernandez, A. Sarai and J. Caballero
- Organizer
  IASC 2008
- Place of Presentation
  Yokohama, Japan
- Data Source
  KAKENHI-PROJECT-20016022
[Presentation] Networks of conserved residue in DNA-binding proteins: analogy with hotspots and implications to prediction2007
- Author(s)
  Shandar Ahmad, Ozlem Keskin, Ruth Nussinov and Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] 出芽酵母ゲノムの転写制御ネットワークの解析2007
- Author(s)
  T. Ueno, H. Kono, A. Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] ストラクチュロームでの分子ネットワークの構築と解析2007
- Author(s)
  Mitsunobu Sekitou and Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] DNA塩基と蛋白質アミノ酸の相互作用自由エネルギーランドスケープ2007
- Author(s)
  Tomoki Yoshida, Hideo Doi, Misako Aida, Hidetoshi Kono, Shaji Kumar, Michael M. Gromiha, Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] 蛋白質・DNA複合体構造の分類2007
- Author(s)
  Ponraj Prabakaran, Shandar Ahmad, M. Michael Gromiha, Maria G. Singarayan, Akinori Sarai
- Organizer
  第7回日本蛋白質科学会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] Analysis of Biomolecular Network in Structurome2007
- Author(s)
  Mitsunobu Sekitou and Akinori Sarai
- Organizer
  第7回国際ゲノム会議
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] 出芽酵母ゲノムの転写制御ネットワークの解析2007
- Author(s)
  T. Ueno, H. Kono, A. Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] Networks of conserved residue in DNA-binding proteins: analogy with hotspots and implications to prediction2007
- Author(s)
  Shandar Ahmad, Ozlem Keskin, Ruth Nussinov and Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] 蛋白質・DNA認識におけるDNAバックボーンコンフォメーションの役割2007
- Author(s)
  Satoshi Fujii, Hidetoshi Kono, Shigeori Takenaka, Nobuhiro Go, Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] 蛋白質-DNA認識における配列依存的DNAリン酸骨格コンフォーメーションの役割2007
- Author(s)
  Satoshi Fujii, Hidetoshi Kono, Shigeori Takenaka, Nobuhiro Go and Akinri Sarai
- Organizer
  第7回日本蛋白質科学会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] 酵母ゲノムでのDNA結合蛋白質の予測2007
- Author(s)
  Antony Ngahu, Takuya Ueno, Shandar Ahmad, Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] Prediction of DNA-binding sites from sequence and structure using machine learning: Improvements and Benchmarking2007
- Author(s)
  Munazah Andrabi, Shandar Ahmad, Kenji Mizuguchi, Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] DNA Sequence-Dependent Deformability Associated With Hydration-Implication For Indirect Readout In Protein-DNA Interactions-2007
- Author(s)
  H. Kono, Y. Yonetani, S. Fujii, A. Sarai, N. Go
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] Analysis of Biomolecular Network in Structurome2007
- Author(s)
  Mitsunobu Sekitou and Akinori Sarai
- Organizer
  2007年日本バイオインフォマティクス学会年会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] 蛋白質・DNA複合体構造の分類2007
- Author(s)
  Ponraj Prabakaran, Shandar Ahmad, M. Michael Gromiha, Maria G. Singarayan, Akinori Sarai
- Organizer
  第7回日本蛋白質科学会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] Analysis of Biomolecular Network in Structurome2007
- Author(s)
  Mitsunobu Sekitou and Akinori Sarai
- Organizer
  2007年日本バイオインフォマティクス学会年会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] Analysis of Biomolecular Network in Structurome2007
- Author(s)
  Mitsunobu Sekitou and Akinori Sarai
- Organizer
  第7回国際ゲノム会議
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] 酵母ゲノムでのDNA結合蛋白質の予測2007
- Author(s)
  Antony Ngahu, Takuya Ueno, Shandar Ahmad, Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] DNA塩基と蛋白質アミノ酸の相互作用自由エネルギーランドスケープ2007
- Author(s)
  Tomoki Yoshida, Hideo Doi, Misako Aida, Hidetoshi Kono, Shaii Kumar, Michael M. Gromiha, Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] DNA Sequence-Dependent Deformability Associated With Hydration-Implication For Indirect Readout In Protein-DNA Interactions-2007
- Author(s)
  H. Kono, Y. Yonetani, S. Fujii, A. Sarai, N. Go
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] 蛋白質・DNA認識におけるDNAバックボーンコンフォメーションの役割2007
- Author(s)
  Satoshi Fujii, Hidetoshi Kono, Shigeori Takenaka, Nobuhiro Go, Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] Role of sequence-dependent DNA conformation in the DNA sequence recognition by proteins and drugs2007
- Author(s)
  Akinori Sarai, Satoshi Fujii, Marcos J. Arauzo-Bravo and Hidetoshi Kono
- Organizer
  15th Annual International Conference on Intelligent Systems for Molecular Biology
- Place of Presentation
  Wien, Austria
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] Role of sequence-dependent DNA conformation in the DNA sequence recognition by proteins and drugs2007
- Author(s)
  Akinori Sarai, Satoshi Fujii, Marcos J. Arauzo-Bravo and Hidetoshi Kono
- Organizer
  15th Annual International Conference on Intelligent Systems for Molecular Biology
- Place of Presentation
  Wien, Austria
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] ストラクチュロームでの分子ネットワークの構築と解析2007
- Author(s)
  Mitsunobu Sekitou and Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] 蛋白質-DNA認識における配列依存的DNAリン酸骨格コンフォーメーションの役割2007
- Author(s)
  Satoshi Fujii, Hidetoshi Kono, Shigeori Takenaka, Nobuhiro Go and Akinri Sarai
- Organizer
  第7回日本蛋白質科学会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-18055026
[Presentation] Prediction of DNA-binding sites from sequence and structure using machine learning: Improvements and Benchmarking2007
- Author(s)
  Munazah Andrabi, Shandar Ahmad, Kenji Mizuguchi, Akinori Sarai
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18016026
[Presentation] PDBnet: Integration of Structural and Biochemical Information into Protein Interaction Network.
- Author(s)
  Satoshi Fujii, Yuji Kawakami, Satoshi komori, Akinori Sarai
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸国際会議場（神戸市）
- Year and Date
  2013-12-03 – 2013-12-06
- Data Source
  KAKENHI-PLANNED-24118008

1. GROMIHA Michael M. (10357973)

# of Collaborated Projects: 6 results

# of Collaborated Products: 2 results
2. TORIGOE Hidetaka (80227678)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
3. YOKOYAMA Kazunari (80182707)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. KONO Hidetoshi (40291918)

# of Collaborated Projects: 2 results

# of Collaborated Products: 2 results
5. FUJII Satoshi (40452825)

# of Collaborated Projects: 2 results

# of Collaborated Products: 23 results
6. 相田美砂子 (90175159)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
7. 高井貴子 (60222840)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
8. 中田琴子 (10237290)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
9. 大橋健 (00233239)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
10. 安江虹

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
11. PRABAKARAN Ponraj

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
12. AHMAD Shandar

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
13. NAKAMURA Haruki (80134485)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. KAMIYA Narutoshi (80420462)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. KASAHARA Kota (90634965)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. SINDO Heisaburo (80138966)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. TSUTSUI Hatsumi (00301763)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. MURATA Takehide (50281621)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. 渡邉信元 (90221689)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
20. 緒方一博 (90260330)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
21. IIDA Midori

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
22. PICHIERRI Fabio

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
23. 斎藤稔

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
24. 森井尚之

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
25. GROMIHA Mich

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
26. SELVARAJ Samuel

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
27. SIEBERS Joerg G.

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
28. 上平初穂

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
29. PICHIERRI Fa

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

SARAI Akinori 皿井 明倫

Research Projects

Research Products

Co-Researchers

Elucidation of information-processing mechanisms during transcription cycle using computational and information sciences

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天然変性蛋白質に関する情報の統合と解析Principal Investigator

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Construction of Integrated Molecular Network Based on Interaction and Structural InformationPrincipal Investigator

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ゲノムスケールでの転写制御ネットワークの解析Principal Investigator

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転写制御における協同性の網羅的解析Principal Investigator

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ゲノムスケールの転写因子とターゲット予測Principal Investigator

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転写制御における協同性の構造メカニズムPrincipal Investigator

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転写因子予測に基づく遺伝子発現制御メカニズムの解析Principal Investigator

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協同的転写制御の構造メカニズムの解明Principal Investigator

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生体分子統合データベース・解析システムの構築Principal Investigator

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蛋白質の安定性と相互作用における水の熱力学的役割Principal Investigator

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生体分子統合データベースの構築とそれに基づく情報解析Principal Investigator

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生体分子統合データベースの構築Principal Investigator

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SARAI Akinori 皿井明倫