AMISAKI Takashi 網崎孝志

… Alternative Names

Amisaki Takashi 網崎孝志

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Researcher Number	20231996
Other IDs
External Links
Affiliation (Current)	2025: 鳥取大学, 医学部, プロジェクト研究員
Affiliation (based on the past Project Information) *help	2025: 鳥取大学, 医学部, プロジェクト研究員 2019 – 2023: 鳥取大学, 医学部, 教授 2015 – 2017: 鳥取大学, 医学部, 教授 2010 – 2012: 鳥取大学, 医学部, 教授 2005 – 2008: Tottori University, Faculty of Medicine, Professor, 医学部, 教授 … More 2004: 国立大学法人鳥取大学, 医学部, 教授 2001 – 2003: 鳥取大学, 医学部, 教授 1996 – 1999: 島根大学, 総合理工学部, 助教授 Less
Review Section/Research Field	Principal Investigator Science and Engineering / Basic Section 62010:Life, health and medical informatics-related / Bioinformatics/Life informatics / Biophysics / Life / Health / Medical informatics / 応用薬理学・医療系薬学
Keywords	Principal Investigator 高速多重極法 / 分子動力学計算 / 専用計算機 / 構造重ね合わせ / 分子動力学 / 変量効果モデル / fast multipole method / molecular dynamics / 周期境界条件 / 薬物動態 … More / クラスタ計算 / 計算グリッド / MD-Engine / GRID / 反復重み最小二乗法 / 変分オートエンコーダ / 構造多様性 / 確率的主成分分析 / クラスタリング / 混合効果モデル / 分散共分散行列 / 頑健性 / 欠損値・欠測値 / 重ね合わせ / 立体構造 / 作業用共分散 / 占有率 / 共分散 / periodic boundary conditions / membrane proteins / molecular dynamics calculation / 薬物動態学 / 擬二次元周期性 / 膜タンパク質 / computation accuracy / cluster computing / parallel computing / special-purpose machine / fast multipole methods / proteins / 専用ハードウェア / SHAKE / 計算精度 / クラスタ / 並列計算 / タンパク質 / parallel processing / accuracy / computation system / Ewald method / algorithm / hardware / メッセージ通信 / バルク同期並列 / 並列処理 / 精度 / 計算システム / Ewald法 / アルゴリズム / ハードウェア / least squares / relative entropy / parameter estimation / pharmacokinetics / 最小二乗法 / 相対エントロピー / パラメータ推定 / 生体生命情報学 / 蛋白質 / 生体分子 / 統計数学 / 反作用場法 / 生体超分子系 / コンピュータシミュレーション / 並列分散計算 / 並列分散処理 / 並列分散 Less

異分散性重ね合わせ法に基づくタンパク質ダイナミクス解析のための確率的生成モデルPrincipal Investigator
- Principal Investigator
  
  網崎孝志
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Tottori University
タンパク質構造ダイナミクスの解析のための階層線形モデルの枠組みでの共分散推定Principal Investigator
- Principal Investigator
  
  網崎孝志
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Tottori University
Methods based on heterogeneous mixed effects model for protein dynamics analysisPrincipal Investigator
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Tottori University
Robust methods for analyzing trajectories for protein dynamicsPrincipal Investigator
- Principal Investigator
  
  Amisaki Takashi
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Tottori University
Comparisons of three-dimensional structures of proteins using hierarchical models and regularization for between-protein variationsPrincipal Investigator
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Tottori University
Development of fast multipole reaction field methods for accurate simulations of super biomoleculesPrincipal Investigator
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  2006 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Tottori University
タンパク質の構造と機能の予測のための計算資源提供型広域計算Principal Investigator
- Principal Investigator
  
  網崎孝志
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Tottori University
Fast algorithms for accurate molecular dynamics simulations of membrane proteinsPrincipal Investigator
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  National University Corporation Tottori University
タンパク質の構造と機能の予測のための計算資源提供型広域計算Principal Investigator
- Principal Investigator
  
  網崎孝志
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Tottori University
タンパク質の構造と機能の予測のための計算資源提供型広域計算Principal Investigator
- Principal Investigator
  
  網崎孝志
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Tottori University
タンパク質の構造と機能の予測のための計算資源提供型広域計算Principal Investigator
- Principal Investigator
  
  網崎孝志
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Science and Engineering
- Research Institution
  Tottori University
Fast algorithm/ hardware joint acceleration for molecular dynamics simulations and its efficacy confirmationPrincipal Investigator
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  2001 – 2002
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Tottori University
Development of high performance computation system with great precision for molecular dynamics simulationsPrincipal Investigator
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  1998 – 1999
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Shimane University
Verification on the effectiveness of minimum relative entropy method for pharmacokinetic analysisPrincipal Investigator
- Principal Investigator
  
  AMISAKI Takashi
- Project Period (FY)
  1996 – 1997
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  応用薬理学・医療系薬学
- Research Institution
  Shimane University

All 2024 2023 2022 2021 2019 2017 2013 2011 2008 2007 2006 2004

All Journal Article Presentation

[Journal Article] Multilevel superposition for deciphering the conformational variability of protein ensembles2024
- Author(s)
  Takashi Amisaki
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 25 Issue: 3
- DOI
  10.1093/bib/bbae137
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K12264
[Journal Article] Fatty acid binding to serum albumin: Molecular simulation approaches2013
- Author(s)
  S. Fujiwara and T. Amisaki
- Journal Title
  
  Biochim. Biophys. Acta
- NAID
  120006724720
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22500275
[Journal Article] Steric and allosteric effects of fatty acids on the binding of warfarin to human serum albumin revealed by molecular dynamics and free energy calculations2011
- Author(s)
  S. Fujiwara and T. Amisaki
- Journal Title
  
  Chem. Pharm. Bull.
  
  Volume: 59 Pages: 860-867
- NAID
  130000748020
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22500275
[Journal Article] Identification of high affinity fatty acid binding sites on human serum albumin by MM-PBSA method2008
- Author(s)
  S. Fujiwara and T. Amisaki
- Journal Title
  
  Biophys. J. 94
  
  Pages: 95-103
- NAID
  120006724722
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18500226
[Journal Article] Molecular dynamics study of conformational changes in human serum albumin by binding of fatty acids2006
- Author(s)
  S. Fujiwara and T. Amisaki
- Journal Title
  
  Proteins 64
  
  Pages: 730-739
- NAID
  120006724724
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18500226
[Journal Article] Implementation and Evaluation of Multiple GridRPC Services for Molecular Dynamics Simulations of Proteins2006
- Author(s)
  T. Amisaki and S. Fujiwara
- Journal Title
  
  IPSJ Transactions on Advanced Computing Systems 47
  
  Pages: 182-192
- NAID
  130000058309
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18500226
[Journal Article] Implementation and evaluation of multiple GridRPC services for molecular dynamics simulations of proteins2006
- Author(s)
  Amisaki, T.
- Journal Title
  
  IPSJ Transactions of Advanced Computing Systems 47・12
  
  Pages: 182-192
- NAID
  130000058309
- Data Source
  KAKENHI-PROJECT-18500226
[Journal Article] 分子動力学専用計算クラスタの開発とそれを利用した計算資源提供型グリッドの試み2004
- Author(s)
  網崎孝志
- Journal Title
  
  情報処理学会論文誌:コンピューティングシステム 45・SIG06
  
  Pages: 244-253
- NAID
  110002712383
- Data Source
  KAKENHI-PROJECT-16016265
[Presentation] Using Inter/Intra-Ensemble Variability for Exploring Dynamics and Heterogeneity of Protein Conformations2023
- Author(s)
  Takashi Amisaki
- Organizer
  CBI学会2023年大会
- Data Source
  KAKENHI-PROJECT-22K12264
[Presentation] 蛋白質立体構造の集団の集まりからの共分散行列の推定2022
- Author(s)
  Takashi Amisaki
- Organizer
  2022年日本バイオインフォマティクス学会年会・第11回生命医薬情報学連合大会
- Data Source
  KAKENHI-PROJECT-22K12264
[Presentation] 蛋白質立体構造の集団の集まりからの共分散行列の推定2022
- Author(s)
  Takashi Amisaki
- Organizer
  2022年日本バイオインフォマティクス学会年会・第11回生命医薬情報学連合大会
- Data Source
  KAKENHI-PROJECT-19K12203
[Presentation] Variance Estimation for Conformational Variability Using Random Effect Models2021
- Author(s)
  Takashi Amisaki
- Organizer
  2021年日本バイオインフォマティクス学会年会（IIBMP2021）
- Data Source
  KAKENHI-PROJECT-19K12203
[Presentation] A Method for Comparing Structural Ensembles: Applications to Molecular Dynamics Trajectory Data2019
- Author(s)
  Takashi Amisaki
- Organizer
  CBI学会2019年大会
- Data Source
  KAKENHI-PROJECT-19K12203
[Presentation] Regression method for comparison of multiple protein conformations2017
- Author(s)
  網崎孝志、藤原伸一
- Organizer
  日本生物物理学会第55回年会（熊本大学）
- Data Source
  KAKENHI-PROJECT-15K00404
[Presentation] 分子動力学シミュレーションによるhMTH1-8-oxo-dGMP 間相互作用の解析2008
- Author(s)
  藤原伸一、石飛文規、片倉和哉、網崎孝志、山縣ゆり子
- Organizer
  日本薬学会第128年会
- Place of Presentation
  パシフィコ横浜会議センター
- Year and Date
  2008-03-27
- Data Source
  KAKENHI-PROJECT-18500226
[Presentation] MM-PBSA 法によるヒト血清アルブミンの脂肪酸強結合部位の同定2007
- Author(s)
  藤原伸一、網崎孝志
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  パシフィコ横浜会議センター
- Year and Date
  2007-12-22
- Data Source
  KAKENHI-PROJECT-18500226
[Presentation] MM-PBSA 法によるヒト血清アルブミンの脂肪酸強結合部位の同定2007
- Author(s)
  藤原伸一、網崎孝志
- Organizer
  日本薬学会第127 年会
- Place of Presentation
  富山
- Year and Date
  2007-03-29
- Data Source
  KAKENHI-PROJECT-18500226
[Presentation] 酸化ヌクレオチド分解酵素ヒトMTH1の分子動力学シミュレーションによるダイナミクス解析2006
- Author(s)
  石飛文規、片倉和哉、藤原伸一、網崎孝志、山縣ゆり子
- Organizer
  第20回分子シミュレーション討論
- Place of Presentation
  仙台国際センター
- Year and Date
  2006-11-28
- Data Source
  KAKENHI-PROJECT-18500226

1. FUJIWARA Shin-ichi (00362880)

# of Collaborated Projects: 5 results

# of Collaborated Products: 10 results

AMISAKI Takashi 網崎 孝志

Amisaki Takashi 網崎 孝志

Research Projects

Research Products

Co-Researchers

異分散性重ね合わせ法に基づくタンパク質ダイナミクス解析のための確率的生成モデルPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

タンパク質構造ダイナミクスの解析のための階層線形モデルの枠組みでの共分散推定Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Methods based on heterogeneous mixed effects model for protein dynamics analysisPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Robust methods for analyzing trajectories for protein dynamicsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Comparisons of three-dimensional structures of proteins using hierarchical models and regularization for between-protein variationsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of fast multipole reaction field methods for accurate simulations of super biomoleculesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

タンパク質の構造と機能の予測のための計算資源提供型広域計算Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Fast algorithms for accurate molecular dynamics simulations of membrane proteinsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

タンパク質の構造と機能の予測のための計算資源提供型広域計算Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

タンパク質の構造と機能の予測のための計算資源提供型広域計算Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

タンパク質の構造と機能の予測のための計算資源提供型広域計算Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Fast algorithm/ hardware joint acceleration for molecular dynamics simulations and its efficacy confirmationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of high performance computation system with great precision for molecular dynamics simulationsPrincipal Investigator

Principal Investigator

Project Period (FY)

AMISAKI Takashi 網崎孝志

Amisaki Takashi 網崎孝志