Kimura Shuhei 木村周平

… Alternative Names

KIMURA Shuhei 木村周平

木村周平キムラシュウヘイ

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Researcher Number	20342777
Other IDs
Affiliation (Current)	2025: 鳥取大学, 工学部, 教授
Affiliation (based on the past Project Information) *help	2017 – 2023: 鳥取大学, 工学研究科, 教授 2013 – 2016: 鳥取大学, 工学(系)研究科(研究院), 教授 2011 – 2012: 鳥取大学, 工学(系)研究科(研究院), 准教授 2007: Tottori University, 工学部, 准教授 2006: 鳥取大学, 工学部, 助教授
Review Section/Research Field	Principal Investigator Basic Section 61040:Soft computing-related / Soft computing / Sensitivity informatics/Soft computing / 基礎ゲノム科学 Except Principal Investigator Medium-sized Section 50:Oncology and related fields
Keywords	Principal Investigator 遺伝子ネットワーク同定 / 遺伝子ネットワーク / 重み付け / 変数重要度 / ランダムフォレスト / 階層構造推定 / 疑似焼きなまし法 / 事前知識 / 階層構造 / GENIE3 … More / Genetic network / ブートストラップ法 / 階層性 / S-system / 制約付き関数最適化 / 進化的アルゴリズム / Vohradskyモデル / S-systemモデル / 遺伝的アルゴリズム / 正規化ガウス関数ネットワーク / DNAマイクロアレイ … More Except Principal Investigator パラメータ推定 / 大規模数理モデル / ネットワーク / 細胞周期 / ゲノムデータ / 予測 / シミュレーション / TNBC / 乳がん / がん / シグナル伝達 / 数理モデル Less

ランダムフォレストにおける変数重要度の質改善方法の開発とその応用Principal Investigator
- Principal Investigator
  
  木村周平
- Project Period (FY)
  2022 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 61040:Soft computing-related
- Research Institution
  Tottori University
Development of a mathematical modeling platform of gene networks for understanding disease mechanisms
- Principal Investigator
  
  Okada Mariko
- Project Period (FY)
  2018 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 50:Oncology and related fields
- Research Institution
  Osaka University
A study of the Improvement of Reliabilities of Regulations using a Hierarchical Structure in a Genetic NetworkPrincipal Investigator
- Principal Investigator
  
  KIMURA Shuhei
- Project Period (FY)
  2014 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Soft computing
- Research Institution
  Tottori University
Development of an evolutionary algorithm for function optimization problems with an equality constraint and its application to the inference of genetic networksPrincipal Investigator
- Principal Investigator
  
  KIMURA Shuhei
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Sensitivity informatics/Soft computing
- Research Institution
  Tottori University
正規化ガウス関数ネットワークモデルを用いた遺伝子ネットワーク同定Principal Investigator
- Principal Investigator
  
  木村周平
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  Tottori University

[Book] Evolutionary Computation in Regulatory Network Research2016
- Author(s)
  S.Kimura
- Total Pages
  424
- Publisher
  Wiley
- Data Source
  KAKENHI-PROJECT-26330275
[Journal Article] Inference of Genetic Networks from Steady-state and Pseudo Time-series of Single-cell Gene Expression Data using Modified Random Forests2023
- Author(s)
  S.Kimura, H.Kitajima, M.Tokuhisa, M.Okada
- Journal Title
  
  Proc. of the 2023 IEEE Symposium Series on Computational Intelligence
  
  Volume: 1 Pages: 1579-1586
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22K12193
[Journal Article] Inference of Genetic Networks using Random Forests: A Quantitative Weighting Method for Gene Expression Data2022
- Author(s)
  S.Kimura, K.Sota and M.Tokuhisa
- Journal Title
  
  Proc. of the 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology
  
  Volume: 1 Pages: 123-130
- DOI
  10.1109/cibcb55180.2022.9863035
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22K12193
[Journal Article] Inference of Genetic Networks From Time-Series and Static Gene Expression Data: Combining a Random-Forest-Based Inference Method With Feature Selection Methods2020
- Author(s)
  Kimura Shuhei、Fukutomi Ryo、Tokuhisa Masato、Okada Mariko
- Journal Title
  
  Frontiers in Genetics
  
  Volume: 11
- DOI
  10.3389/fgene.2020.595912
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H04031
[Journal Article] Inference of Genetic Networks using Random Forests: Assigning Different Weights for Gene Expression Data2019
- Author(s)
  Kimura Shuhei、Tokuhisa Masato、Okada Mariko
- Journal Title
  
  Journal of Bioinformatics and Computational Biology
  
  Volume: 印刷中 Issue: 04 Pages: 1950015-1950015
- DOI
  10.1142/s021972001950015x
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26330275
[Journal Article] [Regular Paper] Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-Series and Static Gene Expression Data2018
- Author(s)
  Kimura Shuhei、Tokuhisa Masato、Okada-Hatakeyama Mariko
- Journal Title
  
  Proc. of the 18th IEEE International Conference on Bioinformatics and Bioengineering
  
  Volume: - Pages: 98-103
- DOI
  10.1109/bibe.2018.00026
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031, KAKENHI-PROJECT-26330275
[Journal Article] Inference of Genetic Networks from Time-series of Gene Expression Levels Using Random Forests2017
- Author(s)
  S.Kimura, M.Tokuhisa and M. Okada-Hatakeyama
- Journal Title
  
  Proc. of the 2017 Conference on Computational Intelligence in Bioinformatics and Computational Biology
  
  Volume: 1 Pages: 22-27
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26330275
[Journal Article] Genetic Network Inference using Hierarchical Structure2016
- Author(s)
  S.Kimura, M.Tokuhisa, M.Okada-Hatakeyama
- Journal Title
  
  Frontiers in Physiology
  
  Volume: 7 Pages: 57-57
- DOI
  10.3389/fphys.2016.00057
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26330275
[Journal Article] Simultaneous Execution Method of Gene Clustering and Network Inference2016
- Author(s)
  S.Kimura, M.Tokuhisa and M. Okada-Hatakeyama
- Journal Title
  
  Proc. of the 2016 Conference on Computational Intelligence in Bioinformatics and Computational Biology
  
  Volume: - Pages: 1-7
- DOI
  10.1109/cibcb.2016.7758123
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26330275
[Journal Article] 遺伝子ネットワークのreduced S-systemモデルの効率的同定法の提案2015
- Author(s)
  木村周平, 佐藤昌直,　岡田眞里子
- Journal Title
  
  情報処理学会研究報告
  
  Volume: 2015-BIO-41 Pages: 1-6
- NAID
  110009884013
- Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26330275
[Journal Article] Improvement of Reliabilities of Regulations using a Hierarchical Structure in a Genetic Network2015
- Author(s)
  S.Kimura, M.Okada-Hatakeyama
- Journal Title
  
  Proc. of the 2015 International Joint Conference on Neural Networks
  
  Volume: 1 Pages: 485-491
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26330275
[Journal Article] A Fast Parameter Estimation Method for Inferring Reduced S-system Models of Genetic Networks2014
- Author(s)
  Shuhei Kimura, Munehiro Furuta, Masanao Sato and Mariko Okada-Hatakeyama
- Journal Title
  
  Proc. of 2014 International Conference on Information Systems and Computing Technology
  
  Volume: なし Pages: 45-50
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26330275
[Journal Article] An Effective Method for the Inference of Reduced S-system Models of Genetic Networks2014
- Author(s)
  Shuhei Kimura, Masanao Sato and Mariko Okada-Hatakeyama
- Journal Title
  
  IPSJ Transactions on Bioinformatics
  
  Volume: 7 Issue: 0 Pages: 30-38
- DOI
  10.2197/ipsjtbio.7.30
- NAID
  130004952388
- ISSN
  1882-6679
- Language
  English
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26330275
[Journal Article] Inference of Vohradsky's Models of Genetic Networks by solving Two-dimensional Function Optimization Problems2013
- Author(s)
  S.Kimura, M.Sato and M.Okada-Hatakeyama
- Journal Title
  
  PLoS One
  
  Volume: 8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700266
[Journal Article] Inference of Vohradsky's Models of Genetic Networks by Solving Two-dimensional Function Optimization Problem2013
- Author(s)
  Shuhei Kimura, Masanao Sato and Mariko Okada-Hatakeyama
- Journal Title
  
  PLoS One
  
  Volume: 8 Issue: 12 Pages: e83308-e83308
- DOI
  10.1371/journal.pone.0083308
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700266
[Journal Article] Development of an Efficient Parameter Estimation Method for the Inference of Vohradsky's Neural Network Models of Genetic Networks2013
- Author(s)
  S.Kimura, M.Sato and M.Okada-Hatakeyama
- Journal Title
  
  Proc. of the 2013 International Joint Conference on Neural Networks
  
  Pages: 2676-2681
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700266
[Journal Article] Development of an Efficient Parameter Estimation Method for the Inference of Vohradsky's Neural Network Models of Genetic Networks2013
- Author(s)
  Shuhei Kimura, Masanao Sato and Mariko Okada-Hatakeyama
- Journal Title
  
  Proceedings of 2013 International Conference on Neural Networks
  
  Volume: なし Pages: 2676-2681
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700266
[Journal Article] Inference of S-system Models of Genetic Networks by Solving One-dimensional Function Optimization Problems2012
- Author(s)
  S.Kimura, D.Araki, K.Matsumura and M.Okada-Hatakeyama
- Journal Title
  
  Mathematical Biosciences
  
  Volume: Vol.235 Pages: 161-170
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700266
[Journal Article] Inference of S-system Models of Genetic Networks by Solving Linear Programming Problems and Sets of Linear Algebraic Equations2012
- Author(s)
  S.Kimura, K.Matsumura and M.Okada-Hatakeyama
- Journal Title
  
  Proc. of the 2012 International Joint Conference on Neural Networks
  
  Pages: 2000-2007
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700266
[Journal Article] Inference of S-system Models of Genetic Networks by Solving Linear Programming Problems and Sets of Linear Algebraic Equations2012
- Author(s)
  S.Kimura, K.Matsumura, M.Okada-Hatakeyama
- Journal Title
  
  Proceedings of the 2012 International Joint Conference on Neural Networks
  
  Volume: なし Pages: 2000-2007
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700266
[Journal Article] nference of S-system models of genetic networks by solving one-dimensional function optimization problems.2012
- Author(s)
  Kimura S., Araki D., Matsumura K., and Okada-Hatakeyama M.
- Journal Title
  
  Math. Biosci
  
  Volume: 235 Issue: 2 Pages: 161-170
- DOI
  10.1016/j.mbs.2011.11.008
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154, KAKENHI-PROJECT-23700266
[Journal Article] Constrained Multimodal Function Optimization using a Simple Evolutionary Algorithm2011
- Author(s)
  S.Kimura, K.Matsumura
- Journal Title
  
  Proceedings of the 2011 Congress on Evolutionary Computation
  
  Volume: なし Pages: 447-454
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700266
[Journal Article] Constrained Multimodal Function Optimization using a Simple Evolutionary Algorithm2011
- Author(s)
  S.Kimura and K.Matsumura
- Journal Title
  
  Proc. of the 2011 Congress on Evolutionary Computation
  
  Pages: 447-454
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700266
[Journal Article] Function approximation approach to the inference of reduced NGnet models of genetic networks2008
- Author(s)
  Shuhei Kimura
- Journal Title
  
  BMC Bioinformatics 9
  
  Pages: 13-13
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18710166
[Journal Article] Inference of Genetic Networks using a Reduced NGnet Model2007
- Author(s)
  Shuhei Kimura
- Journal Title
  
  Proc. of the 2007 International Joint Conference on Neural Networks
  
  Pages: 6-6
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18710166
[Journal Article] Function Approximation Approach to the Inference of Normalized Gaussian Network Models of Genetic Networks2006
- Author(s)
  S.Kimura, K.Sonoda, S.Yamane, K.Matsumura, M.Hatakeyama
- Journal Title
  
  Proceedings of the 2006 International Joint Conference on Neural Networks
  
  Pages: 4525-4532
- Data Source
  KAKENHI-PROJECT-18710166
[Presentation] Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-series and Static Gene Expression Data2018
- Author(s)
  S.Kimura, M.Tokuhisa and M. Okada-Hatakeyama
- Organizer
  The 18th IEEE International Conference on Bioinformatics and Bioengineering
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26330275
[Presentation] Simultaneous Execution Method of Gene Clustering and Network Inference2016
- Author(s)
  S.Kimura, M.Tokuhisa and M. Okada-Hatakeyama
- Organizer
  the 2016 Conference on Computational Intelligence in Bioinformatics and Computational Biology
- Place of Presentation
  チェンマイ，タイ
- Year and Date
  2016-10-05
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26330275
[Presentation] Improvement of Reliabilities of Regulations using a Hierarchical Structure in a Genetic Network2015
- Author(s)
  S.Kimura, M.Okada-Hatakeyama
- Organizer
  the 2015 International Joint Conference on Neural Networks
- Place of Presentation
  キラーニー，アイルランド
- Year and Date
  2015-07-12
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26330275
[Presentation] 階層構造を利用した遺伝子ネットワーク同定2015
- Author(s)
  木村周平
- Organizer
  第１回　理化学研究所・産業技術総合研究所　共同シンポジウム
- Place of Presentation
  台場，東京
- Year and Date
  2015-06-29
- Data Source
  KAKENHI-PROJECT-26330275
[Presentation] 遺伝子ネットワークのreduced S-systemモデルの効率的同定法の提案2015
- Author(s)
  木村周平, 佐藤昌直,　岡田眞里子
- Organizer
  情報処理学会　第41回BIO研究発表会
- Place of Presentation
  北海道大学
- Year and Date
  2015-03-20
- Data Source
  KAKENHI-PROJECT-26330275
[Presentation] 遺伝子ネットワークのS-system モデル高速同定法2011
- Author(s)
  木村周平
- Organizer
  平成23年電気学会電子・情報・システム部門大会
- Place of Presentation
  富山大学(富山県)
- Data Source
  KAKENHI-PROJECT-23700266
[Presentation] 遺伝子ネットワークのS-systemモデル高速同定法2011
- Author(s)
  木村周平
- Organizer
  平成23年電気学会電子・情報・システム部門大会
- Place of Presentation
  富山大学(富山県)
- Data Source
  KAKENHI-PROJECT-23700266
[Presentation] A Fast Parameter Estimation Method for Inferring Reduced S-system Models of Genetic Networks
- Author(s)
  Shuhei Kimura, Munehiro Furuta, Masanao Sato and Mariko Okada-Hatakeyama
- Organizer
  2014 International Conference on Information Systems and Computing Technology
- Place of Presentation
  鳥取大学
- Year and Date
  2014-10-04 – 2014-10-05
- Data Source
  KAKENHI-PROJECT-26330275

1. Okada Mariko (10342833)

# of Collaborated Projects: 2 results

# of Collaborated Products: 15 results

Kimura Shuhei 木村 周平

KIMURA Shuhei 木村 周平

木村 周平 キムラ シュウヘイ

Research Projects

Research Products

Co-Researchers

ランダムフォレストにおける変数重要度の質改善方法の開発とその応用Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of a mathematical modeling platform of gene networks for understanding disease mechanisms

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

A study of the Improvement of Reliabilities of Regulations using a Hierarchical Structure in a Genetic NetworkPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of an evolutionary algorithm for function optimization problems with an equality constraint and its application to the inference of genetic networksPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

正規化ガウス関数ネットワークモデルを用いた遺伝子ネットワーク同定Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Evolutionary Computation in Regulatory Network Research2016

Author(s)

Total Pages

Publisher

Data Source

[Journal Article] Inference of Genetic Networks from Steady-state and Pseudo Time-series of Single-cell Gene Expression Data using Modified Random Forests2023

Author(s)

Journal Title

Data Source

[Journal Article] Inference of Genetic Networks using Random Forests: A Quantitative Weighting Method for Gene Expression Data2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Inference of Genetic Networks From Time-Series and Static Gene Expression Data: Combining a Random-Forest-Based Inference Method With Feature Selection Methods2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Inference of Genetic Networks using Random Forests: Assigning Different Weights for Gene Expression Data2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] [Regular Paper] Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-Series and Static Gene Expression Data2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Inference of Genetic Networks from Time-series of Gene Expression Levels Using Random Forests2017

Author(s)

Journal Title

Data Source

[Journal Article] Genetic Network Inference using Hierarchical Structure2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Simultaneous Execution Method of Gene Clustering and Network Inference2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] 遺伝子ネットワークのreduced S-systemモデルの効率的同定法の提案2015

Kimura Shuhei 木村周平

KIMURA Shuhei 木村周平

木村周平キムラシュウヘイ