CAO Ying 曹纓

Researcher Number	20370091
Affiliation (based on the past Project Information) *help	2012: 統計数理研究所, データ科学研究系, 助教 2012: 統計数理研究所, 大学共同利用機関等の部局等, 助教 2011: 統計数理研究所, データ科学系, 助教 2007 – 2010: 統計数理研究所, モデリング研究系, 助教 2005 – 2006: 統計数理研究所, モデリング研究系, 助手 2004: 統計数理研究所, 予測制御研究系, 助手
Review Section/Research Field	Principal Investigator Biodiversity/Systematics Except Principal Investigator Statistical science / Biodiversity/Systematics
Keywords	Principal Investigator コドンモデル / 最尤法 / トポロジー探索 / クジラ目内部系統 / SARS解析 / multiple references / MCMC法 / カワイルカの系統関係 / ミトコンドリア・ゲノム / SARSの伝播機構 … More / ペンギン目の系統関係 / 分岐年代推定 / コドン置換モデル / ベイズMCMC法 / 最適なトポロジー探索 / ミトコンドリアDNA / 揚子江カワイルカ … More Except Principal Investigator 最尤法 / 分子進化 / モデル / ミトコンドリア / モデル選択 / 分子系統樹 / ゲノム系統学 / Model selection / Codon-substitution model / Maximum likelihood / Molecular phylogeny / Molecular evolution / Modeling / 真核生物 / ハクジラ / ヒゲクジラ / 分子進化のモデル / ゲノムデータ / 推定の偏り / 真獣類 / ゲノム統計学 / ミススペシフィケーション / 分子系統樹推定 / コドン置換モデル / モデリング / AIC / グネツム / 機能的制約 / 分子系統学 / アラインメント / UCA仮説 / 家畜化 / 中立的進化 / 適応的進化 / 種サンプリング / ミトコンドリア系統樹 / 遺伝子系統樹 / 集団系統樹 / 種系統樹 / 連結配列 / ゲノム / モデル比較 / 系統樹推定 Less

Method and Practice of Phylogenomics
- Principal Investigator
  
  HASEGAWA Masami
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biodiversity/Systematics
- Research Institution
  The Institute of Statistical Mathematics
Inferring Molecular Phylogenies in the Post-genomic Era
- Principal Investigator
  
  ADACHI Jun
- Project Period (FY)
  2007 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Statistical science
- Research Institution
  The Institute of Statistical Mathematics
分子系統樹推定に用いるモデルの開発-哺乳類の多様性解明への応用-Principal Investigator
- Principal Investigator
  
  曹纓
- Project Period (FY)
  2004 – 2006
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Biodiversity/Systematics
- Research Institution
  The Institute of Statistical Mathematics
Modeling of Molecular Evolution and Development of the Methods for Phylogenetic Inference
- Principal Investigator
  
  HASEGAWA Masami
- Project Period (FY)
  2004 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Statistical science
- Research Institution
  Institute of Statistical Mathematics

All 2009 2007 2006 2005 Other

All Journal Article Presentation Book

[Book] Our Ancestor : A Saga, Gene Tells听基因〓祖先的故事(中国語)2005
- Author(s)
  長谷川政美, 任文偉, 楊莉琴著, 曹纓, 鍾陽編集
- Total Pages
  143
- Publisher
  上海科技教育出版社
- Data Source
  KAKENHI-PROJECT-16770068
[Journal Article] Complete nucleotide sequence and gene arrangement of the mitochondrial genome of the crab-eating frog Fejervarya cancrivora and evolutionary implications2009
- Author(s)
  Z. Ren, B. Zhu, E. Ma, J. Wen, T. Tu, Y. Cao, M. Hasegawa, Y. Zhong
- Journal Title
  
  Gene 441
  
  Pages: 148-155
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300099
[Journal Article] Computational simulation of interactions between SARS coronavirus spike mutants and host species-specific receptors2007
- Author(s)
  Zhang, Y., Zheng, N., Nan, P., Cao, Y., Hasegawa, M., Zhong Y.
- Journal Title
  
  Computational Biology and Chemistry 31
  
  Pages: 134-137
- Data Source
  KAKENHI-PROJECT-16770068
[Journal Article] Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage2006
- Author(s)
  Sasaki, T., Nikaido, M., Wada, S., Yamada, T., Cao, Y., Hasegawa, M., Okada, N.
- Journal Title
  
  Molecular Phylogenetics and Evolution 41
  
  Pages: 40-52
- Data Source
  KAKENHI-PROJECT-16770068
[Journal Article] New candidate species most closely related to penguins2006
- Author(s)
  M.Watanabe, M.Nikaido, T.T.Tsuda, T.Kobayashi, D.Mindell, Y.Cao, N.Okada, M.Hasegawa
- Journal Title
  
  Gene 378
  
  Pages: 65-73
- Data Source
  KAKENHI-PROJECT-16300089
[Journal Article] Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage2006
- Author(s)
  Sasaki, T., Nikaido, M., Wada, S., Yamada, T., Cao, Y., Hasegawa, M., Okada, N.
- Journal Title
  
  Molecular Phylogenetics and Evolution in press
- Data Source
  KAKENHI-PROJECT-16770068
[Journal Article] Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage2006
- Author(s)
  Sasaki T., Nikaido M., Wada S., Yamada T.K., Cao Y., Hasegawa M., Okada N
- Journal Title
  
  Mol. Phylogenet. Evol. 41
  
  Pages: 40-52
- Data Source
  KAKENHI-PROJECT-16300089
[Journal Article] New candidate species most closely related to penguins2006
- Author(s)
  Watanabe, M., Nikaido, M., Tsuda, T.T., Kobayashi, T., Mindell, D., Cao, Y., Okada, N., Hasegawa, M.
- Journal Title
  
  Gene 378
  
  Pages: 65-73
- Data Source
  KAKENHI-PROJECT-16770068
[Journal Article] Mitochondrial phylogenetics and evolution of Mysticete whales2005
- Author(s)
  T.Sasaki, M.Nikaido, H.Hamilton, M.Goto, H.Kato, N.Kanda, L.A.Pastene, Y.Cao, R.E.Fordyce, M.Hasegawa, N.Okada
- Journal Title
  
  Systematic Biology 54
  
  Pages: 77-90
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-16300089
[Journal Article] Detecting correlation between sequence and expression divergences in a comparative analysis of human serpin genes2005
- Author(s)
  Li, Z., Liu, Q., Song, M., Zheng, Y., Nan, P., Cao, Y., Chen, G., Li, Y., Zhong Y.
- Journal Title
  
  BioSystems (in press)
- Data Source
  KAKENHI-PROJECT-16770068
[Journal Article] Detecting correlation between sequence and expression divergences in a comparative analysis of human serpin genes2005
- Author(s)
  Li, Z., Liu, Q., Song, M., Zheng, Y., Nan, P., Cao, Y., Chen, G., Li, Y., Zhong Y.
- Journal Title
  
  BioSystems 82
  
  Pages: 223-226
- Data Source
  KAKENHI-PROJECT-16770068
[Journal Article] Mitochondrial Phylogenetics and Evolution of Mysticete Whales2005
- Author(s)
  Sasaki, T., Nikaido, M., Hamilton, H., Goto, M., Kato, H., Kanda, N., Pastene, L.A., Cao, Y., Fordyce, R., Hasegawa, M., Okada, N.
- Journal Title
  
  Systematic Biologists 54・1
  
  Pages: 1-14
- Data Source
  KAKENHI-PROJECT-16770068
[Journal Article] A molecular docking model of SARS-CoV S1 protein in complex with its receptor, human ACE22005
- Author(s)
  Zhang, Y., Zheng, N., Hao, P., Cao, Y., Zhong Y.
- Journal Title
  
  Computational Biology and Chemistry 29
  
  Pages: 254-257
- Data Source
  KAKENHI-PROJECT-16770068
[Journal Article] Mitochondrial phylogenetics and evolution of Mysticete whales
- Author(s)
  T.Sasaki, M.Nikaido, H.Hamilton, M.Goto, H.Kato, N.Kanda, L.A.Pastene, Y.Cao, R.E.Fordyce, M.Hasegawa, N.Okada
- Journal Title
  
  Syst.Biol. 54
  
  Pages: 77-90
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-16300089
[Presentation] Molecular phylogeny and evolution of river dolphins: integration of mitochondrial DNA and SINE flanking sequences2007
- Author(s)
  Y. Cao
- Organizer
  Evolution 2007 Conference
- Place of Presentation
  Christchurch, New Zealand
- Year and Date
  2007-06-18
- Data Source
  KAKENHI-PROJECT-19300099

1. ADACHI Jun (30370092)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
2. HASEGAWA Masami (60011657)

# of Collaborated Projects: 3 results

# of Collaborated Products: 5 results
3. YONEZAWA Takahiro

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. NISHIHARA Hidenori (10450727)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. MATSUI Atsushi

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

CAO Ying 曹 纓

Research Projects

Research Products

Co-Researchers

Method and Practice of Phylogenomics

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Inferring Molecular Phylogenies in the Post-genomic Era

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

分子系統樹推定に用いるモデルの開発-哺乳類の多様性解明への応用-Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Modeling of Molecular Evolution and Development of the Methods for Phylogenetic Inference

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Our Ancestor : A Saga, Gene Tells听基因〓祖先的故事(中国語)2005

Author(s)

Total Pages

Publisher

Data Source

[Journal Article] Complete nucleotide sequence and gene arrangement of the mitochondrial genome of the crab-eating frog Fejervarya cancrivora and evolutionary implications2009

Author(s)

Journal Title

Data Source

[Journal Article] Computational simulation of interactions between SARS coronavirus spike mutants and host species-specific receptors2007

Author(s)

Journal Title

Data Source

[Journal Article] Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage2006

Author(s)

Journal Title

Data Source

[Journal Article] New candidate species most closely related to penguins2006

Author(s)

Journal Title

Data Source

[Journal Article] Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage2006

Author(s)

Journal Title

Data Source

[Journal Article] Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage2006

Author(s)

Journal Title

Data Source

[Journal Article] New candidate species most closely related to penguins2006

Author(s)

Journal Title

Data Source

[Journal Article] Mitochondrial phylogenetics and evolution of Mysticete whales2005

Author(s)

Journal Title

Description

Data Source

[Journal Article] Detecting correlation between sequence and expression divergences in a comparative analysis of human serpin genes2005

Author(s)

Journal Title

Data Source

[Journal Article] Detecting correlation between sequence and expression divergences in a comparative analysis of human serpin genes2005

Author(s)

Journal Title

Data Source

[Journal Article] Mitochondrial Phylogenetics and Evolution of Mysticete Whales2005

Author(s)

Journal Title

Data Source

[Journal Article] A molecular docking model of SARS-CoV S1 protein in complex with its receptor, human ACE22005

Author(s)

CAO Ying 曹纓