SHIMADA Atsuko 島田敦子

Researcher Number	20376552
Affiliation (based on the past Project Information) *help	2018: 東京大学, 大学院理学系研究科(理学部), 客員共同研究員 2016 – 2018: 東京大学, 大学院理学系研究科(理学部), 助教 2011 – 2015: 東京大学, 理学(系)研究科(研究院), 助教 2014: 東京大学, 大学院理学系研究科, 助教 2006 – 2012: The University of Tokyo, 大学院・理学系研究科, 助教 2005: 東京大学, 大学院・理学系研究科, 助手
Review Section/Research Field	Principal Investigator Developmental biology Except Principal Investigator Physical anthropology / Genetics/Genome dynamics
Keywords	Principal Investigator メダカ / 体節 / somite / medaka / zic1 / 遺伝子発現境界 / 細胞系譜 / 軟骨魚 / 骨格の起源 / 鰭条 … More / 鱗 / 外骨格 / exoskeleton / 脊椎動物 / 外部形態 / Zic遺伝子 / 発生後期 / Da変異体 / 後期発生 / zic / 背腹パターン / Da / 生殖細胞移植 / 母性変異体 / 突然変異体 / 発生遺伝学 … More Except Principal Investigator ゲノム / 人類学 / 遺伝学 / 進化 / 進化的起源 / 高次構造 / セントロメア / 分子進化 / 霊長類 / ヒト / サテライトＤＮＡ / 反復配列 / 転移酵素遺伝子 / メダカ / 遺伝的変異 / 突然変異 / 転移頻度 / トランスポゾン / 転移因子 Less

Mechanisms for the establishment of the zic1 expression boundary in the teleost trunkPrincipal Investigator
- Principal Investigator
  
  Shimada Atsuko
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Developmental biology
- Research Institution
  The University of Tokyo
Fluctuation in the size of species-specific repetitive DNA of hominoids: quantitative analysis by comparative genomics
- Principal Investigator
  
  KOGA Akihiko
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Physical anthropology
- Research Institution
  Kyoto University
Developmental origin of vertebrate exoskeletonPrincipal Investigator
- Principal Investigator
  
  Shimada Atsuko
- Project Period (FY)
  2012 – 2015
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Developmental biology
- Research Institution
  The University of Tokyo
Dorsoventral patterning mechanism in vertebrate late developmentPrincipal Investigator
- Principal Investigator
  
  SHIMADA Atsuko
- Project Period (FY)
  2009 – 2011
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Developmental biology
- Research Institution
  The University of Tokyo
Factors causing sudden increase in the transposition frequency of transposable elements in medaka fish
- Principal Investigator
  
  KOGA Akihiko
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Genetics/Genome dynamics
- Research Institution
  Kyoto University
  Nagoya University
メダカ突然変異体からの母性変異体作成技術の確立Principal Investigator
- Principal Investigator
  
  島田敦子
- Project Period (FY)
  2005 – 2007
- Research Category
  
  Grant-in-Aid for Exploratory Research
- Research Field
  
  Developmental biology
- Research Institution
  The University of Tokyo

All 2019 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007

All Journal Article Presentation Book

[Book] 細胞工学 vol32, no82013
- Author(s)
  島田敦子、武田洋幸
- Total Pages
  90
- Publisher
  学研メデイカル秀潤社
- Data Source
  KAKENHI-PROJECT-24657148
[Journal Article] Horizontal Boundary Cells, a Special Group of Somitic Cells, Play Crucial Roles in the Formation of Dorsoventral Compartments in Teleost Somite2019
- Author(s)
  Kota Abe,Atsuko Shimada,Sayaka Tayama,Hotaka Nishikawa,Takuya Kaneko, Sachiko Tsuda,Akari Karaiwa,Takaaki Matsui,Tohru Ishitani,Hiroyuki Takeda
- Journal Title
  
  Cell Reports
  
  Volume: 27 Issue: 3 Pages: 928-939
- DOI
  10.1016/j.celrep.2019.03.068
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-26114006, KAKENHI-PROJECT-16K07364, KAKENHI-PLANNED-15H05859, KAKENHI-INTERNATIONAL-15K21726, KAKENHI-PUBLICLY-17H05621, KAKENHI-PROJECT-16H05141, KAKENHI-ORGANIZER-15H05856
[Journal Article] Unexpected link between polyketide synthase and calcium carbonate biomineralization2015
- Author(s)
  Motoki Hojo, Ai Omi, Gen Hamanaka, Kazutoshi Shindo, Atsuko Shimada, Mariko Kondo, Takanori Narita, Masato Kiyomoto, Yohei Katsuyama, Yasuo Ohnishi, Naoki Irie and Hiroyuki Takeda
- Journal Title
  
  Zoological Letters
  
  Volume: 1 Issue: 1 Pages: 1-16
- DOI
  10.1186/s40851-014-0001-0
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24570243, KAKENHI-PROJECT-24657148, KAKENHI-PLANNED-22127002
[Journal Article] A neural mechanism underlying mating preferences for familiar individuals in medaka fish.2014
- Author(s)
  Okuyama T, Yokoi S, Abe H, Isoe Y, Suehiro Y, Imada H, Tanaka M, Kawasaki T, Yuba S, Taniguchi Y, Kamei Y, Okubo K, Shimada A, Naruse K, Takeda H, Oka Y, Kubo T, Takeuchi H
- Journal Title
  
  Science (New York, N.Y.)
  
  Volume: 343 Issue: 6166 Pages: 91-94
- DOI
  10.1126/science.1244724
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-12J04521, KAKENHI-PROJECT-12J05418, KAKENHI-PROJECT-13J08781, KAKENHI-PROJECT-20247005, KAKENHI-PLANNED-22132007, KAKENHI-PROJECT-23300115, KAKENHI-PROJECT-24657050, KAKENHI-PROJECT-24657148, KAKENHI-PROJECT-25440166, KAKENHI-PROJECT-26221104, KAKENHI-PROJECT-25251034
[Journal Article] Genetic control of startle behavior in medaka fish2014
- Author(s)
  Tsuboko S, Kimura T, Shinya M, Suehiro Y, Okuyama T, Shimada A, Takeda H, Naruse K, Kubo T, Takeuchi H
- Journal Title
  
  PLoS one
  
  Volume: 9 Issue: 11 Pages: e112527-e112527
- DOI
  10.1371/journal.pone.0112527
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-12J05418, KAKENHI-PROJECT-13J00423, KAKENHI-PROJECT-24657148, KAKENHI-PROJECT-25640006, KAKENHI-PUBLICLY-26115508, KAKENHI-PROJECT-26290003
[Journal Article] The establishment of rotational polarity in the airway and ependymal cilia: analysis with a novel cilium motility mutant mouse2013
- Author(s)
  Matsuo, M., Shimada, A., Koshida, S., Saga, Y. & Takeda, H.
- Journal Title
  
  Am J Physiol Lung Cell Mol Physiol
  
  Volume: 304 Issue: 11 Pages: L736-L745
- DOI
  10.1152/ajplung.00425.2012
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22127002, KAKENHI-PROJECT-24657148
[Journal Article] Modular development of the teleost trunk along the dorsoventral axis and zic1/zic4 as selector genes in the dorsal module.2013
- Author(s)
  Toru Kawanishi
- Journal Title
  
  Development
  
  Volume: 140 Issue: 7 Pages: 1486-1496
- DOI
  10.1242/dev.088567
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-10J07483, KAKENHI-PROJECT-21570219, KAKENHI-ORGANIZER-22127001, KAKENHI-PLANNED-22127002, KAKENHI-PROJECT-22380104, KAKENHI-PROJECT-24657148, KAKENHI-PROJECT-24780178
[Journal Article] Trunk exoskeleton in teleosts is mesodermal in origin.2013
- Author(s)
  Atsuko Shimada
- Journal Title
  
  Nature Communications
  
  Volume: 4 Issue: 1 Pages: 1-8
- DOI
  10.1038/ncomms2643
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-10J07483, KAKENHI-PROJECT-21570219, KAKENHI-ORGANIZER-22127001, KAKENHI-PLANNED-22127002, KAKENHI-PROJECT-23570251, KAKENHI-PROJECT-23657109, KAKENHI-PROJECT-24657148, KAKENHI-PUBLICLY-23127503
[Journal Article] The medaka zic1/zic4 mutant provides molecular insights into teleost caudal fin evolution.2012
- Author(s)
  Yuuta Moriyama
- Journal Title
  
  Current Biology
  
  Volume: 21 Issue: 7 Pages: 601-607
- DOI
  10.1016/j.cub.2012.01.063
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-10J07483, KAKENHI-PROJECT-10J09017, KAKENHI-PROJECT-11J05881, KAKENHI-PROJECT-20247030, KAKENHI-PROJECT-21370098, KAKENHI-PROJECT-21370103, KAKENHI-PROJECT-21570219, KAKENHI-ORGANIZER-22127001, KAKENHI-PLANNED-22127002, KAKENHI-PROJECT-22370075, KAKENHI-PROJECT-22570218, KAKENHI-PROJECT-22657055, KAKENHI-PROJECT-22700428, KAKENHI-PROJECT-22870008, KAKENHI-PROJECT-23241058, KAKENHI-PROJECT-23570077, KAKENHI-PROJECT-24370088, KAKENHI-PROJECT-24657147, KAKENHI-PROJECT-24657152
[Journal Article] The art of medaka genetics and genomics: what makesthem so unique?2012
- Author(s)
  Takeda, H., Shimada, A.
- Journal Title
  
  Annual Review of Genetics
  
  Volume: 44 Pages: 217-41
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570219
[Journal Article] The art of medaka genetics and genomics : what makes them so unique?2010
- Author(s)
  H.Takeda, A.Shimada
- Journal Title
  
  Annual Reviw of Genetics
  
  Volume: 44 Pages: 217-241
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570219
[Journal Article] Maternal-zygotic medaka mutants for fgfr1 reveal its essential role in the migration of the axial mesoderm but not the lateral mesoderm.2008
- Author(s)
  Shimada, A., Yabusaki, M., Niwa, H., Yokoi, H., Hatta, K., Kobayashi, D., Takeda, H.
- Journal Title
  
  Development 135
  
  Pages: 281-290
- Data Source
  KAKENHI-PROJECT-17657071
[Journal Article] Production of maternal-zygotic medaka mutant using hybrid sterility2008
- Author(s)
  A. Shimada, H. Takeda
- Journal Title
  
  Development Growth and Differentiation 50
  
  Pages: 421-426
- NAID
  10021097033
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17657071
[Journal Article] The Toll transposable element of the medaka fish moves in human and mouse cells.2007
- Author(s)
  Koga A, Shimada A, Kuroki T, Hori H, Kusumi J, Kyono-Hamaguchi Y, Hamaguchi S
- Journal Title
  
  Journal of Human Genetics 52
  
  Pages: 628-635
- NAID
  40015454172
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19570003
[Journal Article] The Tol1 transposable element of the medaka fish moves in human and mouse cells2007
- Author(s)
  Koga A*, Shimada A, Kuroki T, Hori H, Kusumi J, Kyono-Hamaguchi Y, Hamaguchi S
- Journal Title
  
  Journal of Human Genetics 52
  
  Pages: 628-635
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19570003
[Presentation] Development of the zic-expressing dorsal compartment in fish and its implications for evolution of the vertebrate trunk morphology2016
- Author(s)
  Atsuko Shimada, Kota Abe, Hiroyuki Takeda
- Organizer
  第２２回国際動物会議
- Place of Presentation
  沖縄科学技術大学院大学（沖縄県国頭郡恩納村）
- Year and Date
  2016-11-14
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07364
[Presentation] Lineage analysis of osteoblasts in fins and scales of the medaka2016
- Author(s)
  Sayaka Tayama, Atsuko Shimada, Hiroyuki Takeda
- Organizer
  第８７回日本動物学会
- Place of Presentation
  沖縄コンベンションセンター（沖縄県宜野湾市）
- Year and Date
  2016-11-17
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07364
[Presentation] 体節細胞の回転によるメダカ体幹部の背腹形成2015
- Author(s)
  島田敦子、田山さやか、西川穂高、武田洋幸
- Organizer
  第８６回日本動物学会
- Place of Presentation
  新潟コンベンションセンター（新潟県新潟市）
- Year and Date
  2015-09-17
- Data Source
  KAKENHI-PROJECT-24657148
[Presentation] zic1 and zic4 in late embryogenesis mediate patterning for adult dorsoventral trunk2011
- Author(s)
  Kawanishi, T. Moriyama, Y., Shimada, A.,
- Organizer
  第44回日本発生生物学会大会
- Place of Presentation
  宜野湾
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] メダカDa変異体から見える脊椎動物の体づくりのメカニズム2011
- Author(s)
  島田敦子・守山裕太・河西通・武田洋幸
- Organizer
  第84回日本生化学会
- Place of Presentation
  京都(招待講演)
- Year and Date
  2011-09-22
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] 発生後期における zic1/zic4 を介した背腹パターン決定機構2011
- Author(s)
  島田敦子、河西通、守山裕大、武田洋幸
- Organizer
  第84回日本生化学会大会(招待講演)
- Place of Presentation
  京都
- Year and Date
  2011-09-22
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] Mesodermal origin of scales and fins of fish- Insight into origin and evolution of mineralized skeleton in vertebrates2011
- Author(s)
  Shimada, A., Kawanishi, T., Kaneko, T., Yoshihara, H., Yano, T., Inohaya, K., Kamei, Y., Kinoshita, M., Tamura, K., Takeda, H.
- Organizer
  第44回日本発生生物学会大会
- Place of Presentation
  宜野湾
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] zic 遺伝子の発現解析で明らかとなったメダカ体幹部の新しい背側アイデンティティ2010
- Author(s)
  兼子拓也、河西通、守山裕大、木下政人、田中実、塚原達也、島田敦子、越田澄人、武田洋幸
- Organizer
  日本動物学会第81回年会
- Place of Presentation
  目黒
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] zic1 and zic4 expression in the somite regulates dorsalization of the fish trunk structures2010
- Author(s)
  Kawanishi, T., Moriyama, Y. , Nakamura, R., Shimada, A., Takeda, H.
- Organizer
  2010 SDB-JSDB Joint Meeting, Albuquerque
- Place of Presentation
  U.S.A.
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] The zic genes as master regulators in dorsoventral patterning of the fish trunk structures2010
- Author(s)
  Moriyama, Y., Nakamura, R., Kawanishi, T., Shimada, A., Takeda, H.
- Organizer
  2nd Joint Meeting of the SFBD and JSDB
- Place of Presentation
  Paris, France
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] The zic genes as master regulators in dorsoventral patterning of the fish trunk structures2010
- Author(s)
  Yuuta Moriyama, Ryohei Nakamura, Toru Kawanishi, Atsuko Shimada, Hiroyuki
- Organizer
  第二回日仏発生学会
- Place of Presentation
  フランス、パリ
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] メダカ外骨格(鱗、正中鰭)の骨形成細胞の細胞系譜解析2010
- Author(s)
  島田敦子、猪早敬二、伊藤麻紀子、河西通、武田洋幸
- Organizer
  日本動物学会第81回年会
- Place of Presentation
  目黒
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] Embryonic origin of osteoblastsin scales and fins of medaka fish2010
- Author(s)
  Shimada, A., Kawanishi, T., Inohaya, K.,Takeda, H.
- Organizer
  2010SDB-JSDB Joint Meeting, Albuquerque
- Place of Presentation
  U.S.A.
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] メダカDa変異体を用いた体節移植から明らかになった体幹部背腹パターン形2009
- Author(s)
  河西通、守山裕大、島田敦子、武田洋幸
- Organizer
  日本動物学会第80回大会
- Place of Presentation
  静岡
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] Analysis of the somite-specific enhancer of the zic genes in medaka: toward understanding of the evolution of the the external morphology in vertebrates2009
- Author(s)
  Moriyama,Y., Shimada, A., Naruse, K., Fujiyama, A., Toyoda, A., Takeda, H.
- Organizer
  第42回日本発生生物学会
- Place of Presentation
  新潟
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] Analysis of mechanisms underlying the development of the external morphology using the medaka mutant, Double anal fin (Da) - Analysis of the somite-specific enhancer of the zic genes in medaka: toward understanding of the evolution of the the external morphology in vertebrates2009
- Author(s)
  Moriyama, Y., Shimada, A., Naruse, K., Fujiyama, A., Toyoda, A., Takeda, H.
- Organizer
  第32回日本分子生物学会年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] The loss of zic1/zic4 expression in the somite is responsible for the ventralizing phenotype in the medaka mutant Da2009
- Author(s)
  Kawanishi, T., Shimada, A., Takeda, H.
- Organizer
  第42回日本発生生物学会
- Place of Presentation
  新潟
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] メダカ鱗および鰭条における骨形成細胞の細胞系譜解析2009
- Author(s)
  島田敦子、河西通、武田洋幸
- Organizer
  日本動物学会第80回大会
- Place of Presentation
  静岡
- Data Source
  KAKENHI-PROJECT-21570219
[Presentation] メダカ体幹部背腹パターン形成とzic遺伝子-Da変異体を用いた解析2008
- Author(s)
  島田敦子, 守山裕太, 河西通, 武田洋
- Organizer
  第79回日本動物学会
- Place of Presentation
  福岡大学
- Year and Date
  2008-09-07
- Data Source
  KAKENHI-PROJECT-17657071

1. KOGA Akihiko (80192574)

# of Collaborated Projects: 2 results

# of Collaborated Products: 2 results
2. IRIE Naoki

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
3. Ishitani Shizuka

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
4. 石谷太

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
5. 武田洋幸

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

SHIMADA Atsuko 島田 敦子

Research Projects

Research Products

Co-Researchers

Mechanisms for the establishment of the zic1 expression boundary in the teleost trunkPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Fluctuation in the size of species-specific repetitive DNA of hominoids: quantitative analysis by comparative genomics

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Developmental origin of vertebrate exoskeletonPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Dorsoventral patterning mechanism in vertebrate late developmentPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Factors causing sudden increase in the transposition frequency of transposable elements in medaka fish

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

メダカ突然変異体からの母性変異体作成技術の確立Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] 細胞工学 vol32, no82013

Author(s)

Total Pages

Publisher

Data Source

[Journal Article] Horizontal Boundary Cells, a Special Group of Somitic Cells, Play Crucial Roles in the Formation of Dorsoventral Compartments in Teleost Somite2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Unexpected link between polyketide synthase and calcium carbonate biomineralization2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A neural mechanism underlying mating preferences for familiar individuals in medaka fish.2014

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Genetic control of startle behavior in medaka fish2014

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The establishment of rotational polarity in the airway and ependymal cilia: analysis with a novel cilium motility mutant mouse2013

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Modular development of the teleost trunk along the dorsoventral axis and zic1/zic4 as selector genes in the dorsal module.2013

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Trunk exoskeleton in teleosts is mesodermal in origin.2013

Author(s)

Journal Title

DOI

Data Source

SHIMADA Atsuko 島田敦子