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Murakami Youichi  村上 洋一

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村上 洋一  ムラカミ ヨウイチ

MURAKAMI Yoichi  村上 洋一

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Researcher Number 20548424
Other IDs
Affiliation (Current) 2025: 東京情報大学, 総合情報学部, 教授
Affiliation (based on the past Project Information) *help 2019 – 2023: 東京情報大学, 総合情報学部, 准教授
2016: 国立研究開発法人医薬基盤・健康・栄養研究所, 医薬基盤研究所 創薬デザイン研究センター, プロジェクト研究員
2015: 国立研究開発法人医薬基盤・健康・栄養研究所, 医薬基盤研究所 バイオインフォマティクスプロジェクト, プロジェクト研究員
2015: 国立研究開発法人 医薬基盤・健康・栄養研究所, 医薬基盤研究所, プロジェクト研究員
2014: 東北大学, 情報科学研究科, 教育研究支援者
Review Section/Research Field
Principal Investigator
Basic Section 62010:Life, health and medical informatics-related / System genome science
Except Principal Investigator
Basic Section 58050:Fundamental of nursing-related / Basic Section 58080:Gerontological nursing and community health nursing-related / System genome science
Keywords
Principal Investigator
タンパク質間相互作用予測 / バイオインフォマティクス / 創薬支援 / 機械学習 / タンパク質間相互作用 / 創薬支援システム / タンパク質間相互作用部位予測 / テキストマイニング / 予測 / アミノ酸残基 / アミノ酸保存度 / タンパク質機能 … More
Except Principal Investigator
… More AI / 拡張知能 / 機械学習 / 情報教育 / 看護情報学 / 情報セキュリティ / 地域包括ケア / 生体センシング / 遠隔医療 / 特徴量 / アプリケーション / 医療情報 / セルフモニタリング / 遠隔看護 / Artificial Intelligence / Extended Intelligence / 訪問看護師 / 臨床判断 / AI技術 / 判断支援 / 訪問看護 / 意思決定支援 / 看護臨床判断 / 看護観察技術 / 意思決定 / 生体情報 / バイタルサイン / 臨床判断支援 / タンパク質相互作用 / 創薬ターゲット / データベース Less
  • Research Projects

    (6 results)
  • Research Products

    (18 results)
  • Co-Researchers

    (14 People)
  •  Prediction of binding sites between proteins by deep learning, and development of the system to help facilitate target site selectionPrincipal Investigator

    • Principal Investigator
      村上 洋一
    • Project Period (FY)
      2020 – 2024
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 62010:Life, health and medical informatics-related
    • Research Institution
      Tokyo University of Information Sciences
  •  Development of a self-monitoring system for "medical care with patients" by telenursing

    • Principal Investigator
      KAWAGUCHI TAKAYASU
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 58050:Fundamental of nursing-related
    • Research Institution
      Iryo Sosei University
      Tokyo University of Information Sciences
  •  Creation of new technology for utilization of AI to support clinical judgment in nursing

    • Principal Investigator
      Ito Yoshiaki
    • Project Period (FY)
      2019 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 58050:Fundamental of nursing-related
    • Research Institution
      Iryo Sosei University
      Tokyo University of Information Sciences
  •  Construction of AI and Utilization of Extended Intelligence (EI) on Nursing Decision Support System for Home Health Care

    • Principal Investigator
      Kasai Yoshimi
    • Project Period (FY)
      2019 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 58080:Gerontological nursing and community health nursing-related
    • Research Institution
      Iryo Sosei University
      Tokyo University of Information Sciences
  •  Development of a sequence-based prediction method of interacting protein partners for drug target discoveryPrincipal Investigator

    • Principal Investigator
      Murakami Yoichi
    • Project Period (FY)
      2014 – 2016
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      System genome science
    • Research Institution
      National Institutes of Biomedical Innovation, Health and Nutrition
      Tohoku University
  •  Development of a target discovery platform by integrating data warehousing and protein function prediction

    • Principal Investigator
      Mizuguchi Kenji
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      System genome science
    • Research Institution
      National Institutes of Biomedical Innovation, Health and Nutrition

All 2023 2022 2017 2016 2015 2014 2013

All Journal Article Presentation Patent

  • [Journal Article] Analysis of relationships between protein sequence embeddings and their sequence/structural features2023

    • Author(s)
      Satsuki Ueta, Yoichi Murakami
    • Journal Title

      研究報告数理モデル化と問題解決(MPS)

      Volume: 2023-MPS-142 Pages: 1-3

    • Data Source
      KAKENHI-PROJECT-20K12048
  • [Journal Article] Recent developments of sequence-based prediction of protein?protein interactions2022

    • Author(s)
      Murakami Yoichi, Mizuguchi Kenji
    • Journal Title

      Biophysical Reviews

      Volume: 14 Issue: 6 Pages: 1393-1411

    • DOI

      10.1007/s12551-022-01038-1

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K12048
  • [Journal Article] Network analysis and in silico prediction of protein-protein interactions with applications in drug discovery2017

    • Author(s)
      Yoichi Murakami, Lokesh P Tripathi, Philip Prathipati and Kenji Mizuguchi
    • Journal Title

      Current Opinion of Structural Biology

      Volume: 44 Pages: 134-142

    • DOI

      10.1016/j.sbi.2017.02.005

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-26870045
  • [Journal Article] NLDB: a database for 3D protein-ligand interactions in enzymatic reactions2016

    • Author(s)
      Yoichi Murakami, Satoshi Omori, and Kengo Kinoshita
    • Journal Title

      J Struct Funct Genomics

      Volume: 17 Issue: 4 Pages: 101-110

    • DOI

      10.1007/s10969-016-9206-0

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-15H02773, KAKENHI-PROJECT-26870045
  • [Journal Article] Homology-based prodection of interactions between proteins using Averaged One-Dependence Estimators2014

    • Author(s)
      Mizuguchi K., Murakami Y.
    • Journal Title

      BMC bioinformatics

      Volume: 15 Issue: 1 Pages: 213-213

    • DOI

      10.1186/1471-2105-15-213

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-25430186, KAKENHI-PROJECT-26870045
  • [Journal Article] Brefeldin A-inhibited guanine nucleotide-exchange protein 3 (BIG3) is predicted to interact with its partner through an ARM-type α-helical structure2014

    • Author(s)
      Mizuguchi K., Chen Y. A., Murakami Y., Ahmad S., Yoshimaru T., Katagri T.
    • Journal Title

      BMC Res Notes

      Volume: 7 Issue: 1 Pages: 435-435

    • DOI

      10.1186/1756-0500-7-435

    • NAID

      120006864075

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-25430186, KAKENHI-PROJECT-26461948, KAKENHI-PROJECT-26870045
  • [Journal Article] Targeting BIG3-PHB2 interaction to overcome tamoxifen resistance in breast cancer cells2013

    • Author(s)
      T. Yoshimaru, M. Komatsu, T. Matsuo, Y.-A. Chen, Y. Murakami, K. Mizuguchi, E. Mizohata, T. Inoue, M. Akiyama, R. Yamaguchi, S. Imoto, S. Miyano, Y. Miyoshi, M. Sasa, Y. Nakamura, and T. Katagiri
    • Journal Title

      Nature Communications

      Volume: 4 Issue: 1 Pages: 2433-2433

    • DOI

      10.1038/ncomms3443

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-24109017, KAKENHI-PUBLICLY-25134712, KAKENHI-PROJECT-25293079, KAKENHI-PROJECT-25430186
  • [Patent] エピトープ均質化パネル、ならびにその作製方法および利用2017

    • Inventor(s)
      近藤裕郷、鎌田春彦、永田諭志、水 口賢司、村上洋一
    • Industrial Property Rights Holder
      近藤裕郷、鎌田春彦、永田諭志、水 口賢司、村上洋一
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2017-021553
    • Filing Date
      2017-02-08
    • Data Source
      KAKENHI-PROJECT-26870045
  • [Presentation] Application of a Doc2Vec-based machine learning method toward more reliable prediction of human protein-protein interactions2023

    • Author(s)
      上田さつき,村上洋一
    • Organizer
      CBI学会2023年大会
    • Data Source
      KAKENHI-PROJECT-20K12048
  • [Presentation] タンパク質の分散表現とその配列・構造的特徴の関係性に関する解析2023

    • Author(s)
      上田さつき,村上洋一
    • Organizer
      第142回 MPS・第73回BIO合同研究発表会
    • Data Source
      KAKENHI-PROJECT-20K12048
  • [Presentation] Analysis of the relationship between the distributed representations of protein sequences and their structures2022

    • Author(s)
      上田さつき,富田瑞樹,朴鍾杰,村上洋一
    • Organizer
      2022年度バイオインフォマティクス年会 第11回生命医薬情報学連合大会
    • Data Source
      KAKENHI-PROJECT-20K12048
  • [Presentation] 薬物による Kir1.1 チャネル阻害の基盤2016

    • Author(s)
      古谷和春、半田健一郎、村上洋一、木下賢吾、倉智嘉久
    • Organizer
      第89回日本薬理学会年会
    • Place of Presentation
      神奈川 パシフィコ横浜 会議センター
    • Year and Date
      2016-03-09
    • Data Source
      KAKENHI-PROJECT-26870045
  • [Presentation] Prediction of 3D protein-ligand interactions in enzymatic reactions2016

    • Author(s)
      村上洋一、大森聡、木下賢吾
    • Organizer
      構造活性相関シンポジウム
    • Place of Presentation
      京都大学医学部創立百年記念施設・芝蘭会館(京都)
    • Data Source
      KAKENHI-PROJECT-26870045
  • [Presentation] Prediction of interacting protein pairs using homology-based approach2016

    • Author(s)
      村上洋一、水口賢司
    • Organizer
      第 5 回生命 医薬情報学連合大会
    • Place of Presentation
      東京国際交流館プラア平成(東京お台場)
    • Year and Date
      2016-09-29
    • Data Source
      KAKENHI-PROJECT-26870045
  • [Presentation] Prediction of interacting proteins from homologous protein-protein interactions2016

    • Author(s)
      村上洋一、水口賢司
    • Organizer
      CBI 学会2016年大会
    • Place of Presentation
      タワーホール船堀(東京)
    • Year and Date
      2016-10-25
    • Data Source
      KAKENHI-PROJECT-26870045
  • [Presentation] Kir1.1 チャネルにおける小分子結合部位の構造活性相関解析2016

    • Author(s)
      古谷和春、半田健一郎、村上洋一、木下賢吾、倉智嘉久
    • Organizer
      第93回日本生理学会大会
    • Place of Presentation
      北海道 札幌コンベンションセンター
    • Year and Date
      2016-03-22
    • Data Source
      KAKENHI-PROJECT-26870045
  • [Presentation] A database for protein-ligand complexes in enzymatic reaction2015

    • Author(s)
      村上洋一
    • Organizer
      情報計算化学生物学会
    • Place of Presentation
      東京 タワーホール船堀
    • Year and Date
      2015-10-27
    • Data Source
      KAKENHI-PROJECT-26870045
  • [Presentation] A machine learning approach for predicting protein-protein interactions2015

    • Author(s)
      Yoichi Murakami
    • Organizer
      IPR Seminar
    • Place of Presentation
      Institute for Protein Research, Osaka University.
    • Year and Date
      2015-03-06
    • Data Source
      KAKENHI-PROJECT-26870045
  • 1.  Ito Yoshiaki (60804870)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 0 results
  • 2.  KAWAGUCHI TAKAYASU (40214613)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 0 results
  • 3.  Kasai Yoshimi (70384154)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 0 results
  • 4.  大石 朋子 (40413257)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 0 results
  • 5.  豊増 佳子 (60276657)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 0 results
  • 6.  今井 哲郎 (10436173)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 0 results
  • 7.  Mizuguchi Kenji (50450896)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 8.  日向野 香織 (10709695)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 9.  木村 穣 (60298859)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 10.  高橋 道明 (90710814)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 11.  浅野 美礼 (00273417)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 12.  中村 努
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 13.  井上 豪
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 14.  木下 賢吾
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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