Uda Shinsuke 宇田新介

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UDA SHINSUKE 宇田新介

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Researcher Number	20599609
Other IDs
Affiliation (Current)	2025: 山口大学, 情報・データ科学教育センター, 准教授 2025: 九州大学, 生体防御医学研究所, 共同研究員
Affiliation (based on the past Project Information) *help	2024: 山口大学, 情報・データ科学教育センター, 准教授 2023: 九州大学, 生体防御医学研究所, 共同研究員 2014 – 2022: 九州大学, 生体防御医学研究所, 准教授 2013: 東京大学, 理学(系)研究科(研究院), 助教
Review Section/Research Field	Principal Investigator Complex systems / Biological Sciences / Basic Section 43060:System genome science-related / System genome science Except Principal Investigator Transformative Research Areas, Section (III) / Mathematical Sciences in Search of New Cooperation
Keywords	Principal Investigator システム生物学 / 情報理論 / トランスオミクス / 情報科学 / データ解析 / 機械学習 / シグナル伝達 / オミクス / 正負の選択 / 情報 … More / 生命科学 / 胸腺T細胞 / 統合オミクス解析 / 生体生命情報学 / 情報工学 / スパース推定 / 分子ネットワーク / スパース性 / 頑健性 / 堅牢性 … More Except Principal Investigator プロテオミクス / リピドミクス / メタボロミクス / マルチオミクス / 数理解析 / オミクス計測 / 免疫センサー / 自己成分 / 自己認識 / リン酸化プロテオミクス / インスリン情報伝達機構 Less

Comprehensive identification of self-ligands and understanding of immune network formation through self-recognition
- Principal Investigator
  
  和泉自泰
- Project Period (FY)
  2022 – 2026
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Kyushu University
Development of transomics data analysis methods based on information theoryPrincipal Investigator
- Principal Investigator
  
  宇田新介
- Project Period (FY)
  2020 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu University
データ駆動アプローチからのトランスオミクスネットワーク推定法の開発Principal Investigator
- Principal Investigator
  
  宇田新介
- Project Period (FY)
  2018 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  Kyushu University
Deciphering positive and negative selection in thymocyte from information theoretic approachPrincipal Investigator
- Principal Investigator
  
  Uda Shinsuke
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Kyushu University
多階層オミクスデータのためのネットワーク推定方法の開発Principal Investigator
- Principal Investigator
  
  宇田新介
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Kyushu University
Elucidation of insulin signal transduction mechanism with mathematical analysis of network dynamics
- Principal Investigator
  
  Matsuzaki Fumiko
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Mathematical Sciences in Search of New Cooperation
- Research Institution
  Kyushu University
疎性を用いた多階層ネットワークの同定Principal Investigator
- Principal Investigator
  
  宇田新介
- Project Period (FY)
  2014 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Kyushu University
Information theoretical analysis of signaling networkPrincipal Investigator
- Principal Investigator
  
  UDA SHINSUKE
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  System genome science
- Research Institution
  Kyushu University
  The University of Tokyo

All 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013

All Journal Article Presentation

[Journal Article] Modulation of host glutamine anabolism enhances the sensitivity of small cell lung cancer to chemotherapy.2023
- Author(s)
  Kodama M, Toyokawa G, Sugahara O, Sugiyama S, Haratake N, Yamada Y, Wada R, Takamori S, Shimokawa M, Takenaka T, Tagawa T, Kittaka H, Tsuruda T, Tanaka K, Komatsu Y, Nakata K, Imado Y, Yamazaki K, Okamoto I, Oda Y, Takahashi M, Izumi Y, Bamba T, Shimizu H, Yoshizumi T, Nakayama KI*.
- Journal Title
  
  Cell Reports
  
  Volume: 42(8) Issue: 8 Pages: 112899-112899
- DOI
  10.1016/j.celrep.2023.112899
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K18924, KAKENHI-PROJECT-23K18502, KAKENHI-PLANNED-22H05185, KAKENHI-PROJECT-23K23151
[Journal Article] Lipidome and metabolome analyses reveal metabolic alterations associated with MCF-7 cell apoptosis upon 4-hydroxytamoxifen treatment.2023
- Author(s)
  Nishimoto K, Okahashi N, Maruyama M, Izumi Y, Nakatani K, Ito Y, Iida J, Bamba T, Matsuda F*.
- Journal Title
  
  Scientific Reports
  
  Volume: 13(1) Issue: 1 Pages: 18549-18549
- DOI
  10.1038/s41598-023-45764-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K18924, KAKENHI-PROJECT-22KJ0996, KAKENHI-PLANNED-22H05185, KAKENHI-PROJECT-23K23151
[Journal Article] Improved 2,3-butanediol production rate of metabolically engineered Saccharomyces cerevisiae by deletion of RIM15 and activation of pyruvate consumption pathway.2023
- Author(s)
  Sugimura M, Seike T, Okahashi N, Izumi Y, Bamba T, Ishii J, Matsuda F*.
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 24(22) Issue: 22 Pages: 16378-16378
- DOI
  10.3390/ijms242216378
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K18924, KAKENHI-PLANNED-22H05185, KAKENHI-PROJECT-23K23147, KAKENHI-PROJECT-23K23151
[Journal Article] TFEB-mediated lysosomal exocytosis alleviates high fat diet?induced lipotoxicity in the kidney.2023
- Author(s)
  Nakmura J, Yamamoto T*, Takabatake Y, Namba-Hamano T, Minami S, Takahashi A, Matsuda J, Sakai S, Yonishi H, Maeda S, Matsui S, Matsui I, Hamano T, Takahashi M, Goto M, Izumi Y, Bamba T, Sasai M, Yamamoto M, Matsusaka T, Niimura F, Yanagita M, Nakamura S, Yoshimori T, Ballabio A, Isaka Y.
- Journal Title
  
  JCI Insight
  
  Volume: 8(4) Issue: 4
- DOI
  10.1172/jci.insight.162498
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K18924, KAKENHI-PROJECT-20K17279, KAKENHI-PLANNED-22H05185, KAKENHI-PROJECT-22H04982, KAKENHI-PROJECT-18H02642, KAKENHI-PROJECT-23K21437
[Journal Article] Adrenal steroid metabolites and bone status in patients with adrenal incidentalomas and hypercortisolism.2023
- Author(s)
  Nakao H, Yokomoto-Umakoshi M*, Nakatani K, Umakoshi H, Ogata M, Fukumoto T, Kaneko H, Iwahashi N, Fujita M, Ogasawara T, Matsuda Y, Sakamoto R, Izumi Y, Bamba T, Ogawa Y*.
- Journal Title
  
  eBioMedicine
  
  Volume: 95 Pages: 104733-104733
- DOI
  10.1016/j.ebiom.2023.104733
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K18924, KAKENHI-PROJECT-21K14472, KAKENHI-PROJECT-23K15392, KAKENHI-PROJECT-23KJ1747, KAKENHI-PROJECT-22K08627, KAKENHI-PROJECT-22KJ2405, KAKENHI-PLANNED-22H05185, KAKENHI-PROJECT-22H04993
[Journal Article] Four features of temporal patterns characterize similarity among individuals and molecules by glucose ingestion in humans2022
- Author(s)
  Fujita Suguru、Karasawa Yasuaki、Fujii Masashi、Hironaka Ken-ichi、Uda Shinsuke、Kubota Hiroyuki、Inoue Hiroshi、Sumitomo Yohei、Hirayama Akiyoshi、Soga Tomoyoshi、Kuroda Shinya
- Journal Title
  
  npj Systems Biology and Applications
  
  Volume: 8 Issue: 1 Pages: 6-6
- DOI
  10.1038/s41540-022-00213-0
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-16H06577, KAKENHI-ORGANIZER-17H06299, KAKENHI-PUBLICLY-20H04847, KAKENHI-PUBLICLY-20H04943, KAKENHI-PROJECT-20H04102, KAKENHI-PROJECT-18K16578, KAKENHI-PROJECT-19K20382, KAKENHI-PROJECT-20H03237, KAKENHI-PROJECT-18H03979, KAKENHI-PLANNED-17H06300
[Journal Article] An extensive and dynamic trans-omic network illustrating prominent regulatory mechanisms in response to insulin in the liver2021
- Author(s)
  Matsuzaki Fumiko、Uda Shinsuke、Yamauchi Yukiyo、Matsumoto Masaki、Soga Tomoyoshi、Maehara Kazumitsu、Ohkawa Yasuyuki、Nakayama Keiichi I.、Kuroda Shinya、Kubota Hiroyuki
- Journal Title
  
  Cell Reports
  
  Volume: 36 Issue: 8 Pages: 109569-109569
- DOI
  10.1016/j.celrep.2021.109569
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-16H06577, KAKENHI-ORGANIZER-17H06299, KAKENHI-PROJECT-18H05215, KAKENHI-PUBLICLY-20H04847, KAKENHI-PLANNED-20H05930, KAKENHI-PROJECT-20K21386, KAKENHI-PROJECT-18K15011, KAKENHI-PROJECT-20H03237, KAKENHI-PLANNED-17H06300
[Journal Article] Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity2020
- Author(s)
  Kokaji Toshiya、Hatano Atsushi、Ito Yuki、et al.
- Journal Title
  
  Science Signaling
  
  Volume: 13 Issue: 660 Pages: 1236-1236
- DOI
  10.1126/scisignal.aaz1236
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21386, KAKENHI-PROJECT-19K20382, KAKENHI-PROJECT-19K20394, KAKENHI-PROJECT-20K19915, KAKENHI-PLANNED-17H06300, KAKENHI-PROJECT-18H05215, KAKENHI-PUBLICLY-19H04969, KAKENHI-PUBLICLY-19H05243, KAKENHI-PUBLICLY-20H04847, KAKENHI-PUBLICLY-20H04943, KAKENHI-PROJECT-18H02431, KAKENHI-PROJECT-20H04102, KAKENHI-PROJECT-19K24361, KAKENHI-ORGANIZER-17H06299, KAKENHI-PROJECT-18H03979, KAKENHI-PLANNED-16H06577, KAKENHI-PLANNED-18H05431, KAKENHI-PLANNED-20H05930, KAKENHI-PROJECT-18KT0020, KAKENHI-PROJECT-20H03237
[Journal Article] Single-Cell Information Analysis Reveals That Skeletal Muscles Incorporate Cell-to-Cell Variability as Information Not Noise2020
- Author(s)
  Wada Takumi、Hironaka Ken-ichi、Wataya Mitsutaka、Fujii Masashi、Eto Miki、Uda Shinsuke、Hoshino Daisuke、Kunida Katsuyuki、Inoue Haruki、Kubota Hiroyuki、Takizawa Tsuguto、Karasawa Yasuaki、Nakatomi Hirofumi、Saito Nobuhito、Hamaguchi Hiroki、Furuichi Yasuro、Manabe Yasuko、Fujii Nobuharu L.、Kuroda Shinya
- Journal Title
  
  Cell Reports
  
  Volume: 32 Issue: 9 Pages: 108051-108051
- DOI
  10.1016/j.celrep.2020.108051
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K16578, KAKENHI-PROJECT-19K20382, KAKENHI-PUBLICLY-20H04847, KAKENHI-PROJECT-18H02431, KAKENHI-PROJECT-20J14059, KAKENHI-PROJECT-19K22860, KAKENHI-ORGANIZER-17H06299, KAKENHI-PROJECT-18H03979, KAKENHI-PLANNED-16H06577, KAKENHI-PROJECT-20H03237
[Journal Article] Approximate Conditional Independence Test using Residuals2020
- Author(s)
  Uda Shinsuke
- Journal Title
  
  Proceedings of the 12th International Conference on Agents and Artificial Intelligence
  
  Volume: 2 Pages: 297-304
- DOI
  10.5220/0008866102970304
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-18H04801
[Journal Article] Application of information theory in systems biology2020
- Author(s)
  Shinsuke Uda
- Journal Title
  
  Biophysical Review
  
  Volume: - Issue: 2 Pages: 377-384
- DOI
  10.1007/s12551-020-00665-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-18H04801, KAKENHI-PROJECT-18H02431
[Journal Article] Trans-omics impact of thymoproteasome in cortical thymic epithelial cells.2019
- Author(s)
  Ohigashi I, Tanaka Y, Kondo K, Fujimori S, Kondo H, Palin A, Hoffmann V, Kozai M, Matsushita Y, Uda S, Motosugi R, Hamazaki J, Kubota H, Murata S, Tanaka K, Katagiri T, Kosako H, Takahama Y
- Journal Title
  
  Cell Reports
  
  Volume: 29 Issue: 9 Pages: 2901-2916
- DOI
  10.1016/j.celrep.2019.10.079
- NAID
  120006894616
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07062, KAKENHI-PLANNED-17H06419, KAKENHI-PUBLICLY-18H04801, KAKENHI-PLANNED-18H05500, KAKENHI-PROJECT-16H02630, KAKENHI-PROJECT-18H04022, KAKENHI-PROJECT-19H00997, KAKENHI-PROJECT-18H02431, KAKENHI-PROJECT-17K08884, KAKENHI-PROJECT-26000014, KAKENHI-PLANNED-16H06577
[Journal Article] Logical design of oral glucose ingestion pattern minimizing blood glucose in humans.2019
- Author(s)
  Fujii M, Murakami Y, Karasawa Y, Sumitomo Y, Fujita S, Koyama M, Uda S, Kubota H, Inoue H, Konishi K, Oba S, Ishii S, Kuroda S.
- Journal Title
  
  NPJ Syst Biol Appl.
  
  Volume: 5 Issue: 1 Pages: 31-31
- DOI
  10.1038/s41540-019-0108-1
- NAID
  120006939199
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18KT0020, KAKENHI-PROJECT-18K16578, KAKENHI-PROJECT-19K20382, KAKENHI-PUBLICLY-18H04801, KAKENHI-ORGANIZER-17H06299, KAKENHI-PLANNED-17H06300, KAKENHI-PLANNED-16H06577
[Journal Article] Reconstruction of global regulatory network from signaling to cellular functions using phosphoproteomic data2018
- Author(s)
  Kawata Kentaro、Yugi Katsuyuki、Hatano Atsushi、Kokaji Toshiya、Tomizawa Yoko、Fujii Masashi、Uda Shinsuke、Kubota Hiroyuki、Matsumoto Masaki、Nakayama Keiichi I.、Kuroda Shinya
- Journal Title
  
  Genes to Cells
  
  Volume: 24 Issue: 1 Pages: 82-93
- DOI
  10.1111/gtc.12655
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H05215, KAKENHI-PUBLICLY-18H04801, KAKENHI-PROJECT-16K12508, KAKENHI-ORGANIZER-17H06299, KAKENHI-PLANNED-17H06300, KAKENHI-PROJECT-18H02431, KAKENHI-PROJECT-15H05582, KAKENHI-PLANNED-16H06577, KAKENHI-PLANNED-18H05431
[Journal Article] Increase in hepatic and decrease in peripheral insulin clearance characterize abnormal temporal patterns of serum insulin in diabetic subjects2018
- Author(s)
  Ohashi Kaoru、Fujii Masashi、Uda Shinsuke、Kubota Hiroyuki、Komada Hisako、Sakaguchi Kazuhiko、Ogawa Wataru、Kuroda Shinya
- Journal Title
  
  npj Systems Biology and Applications
  
  Volume: 4 Issue: 1 Pages: 14-14
- DOI
  10.1038/s41540-018-0051-6
- NAID
  120006599090
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K12508, KAKENHI-PUBLICLY-16H01551, KAKENHI-PROJECT-17J02672, KAKENHI-PLANNED-16H06577
[Journal Article] In?Vivo Decoding Mechanisms of the Temporal Patterns of Blood Insulin by the Insulin-AKT Pathway in the Liver2018
- Author(s)
  Kubota Hiroyuki、Uda Shinsuke、Matsuzaki Fumiko、Yamauchi Yukiyo、Kuroda Shinya
- Journal Title
  
  Cell Systems
  
  Volume: 7 Issue: 1 Pages: 1-11
- DOI
  10.1016/j.cels.2018.05.013
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-18H04801, KAKENHI-ORGANIZER-17H06299, KAKENHI-PLANNED-17H06300, KAKENHI-PLANNED-16H06577
[Journal Article] Trans-omic Analysis Reveals Selective Responses to Induced and Basal Insulin across Signaling, Transcriptional, and Metabolic Networks2018
- Author(s)
  Kawata Kentaro、Hatano Atsushi、Yugi Katsuyuki、Kubota Hiroyuki、Sano Takanori、Fujii Masashi、Tomizawa Yoko、Kokaji Toshiya、Tanaka Kaori Y.、Uda Shinsuke、Suzuki Yutaka、Matsumoto Masaki、Nakayama Keiichi I.、Saitoh Kaori、Kato Keiko、Ueno Ayano、Ohishi Maki、Hirayama Akiyoshi、Soga Tomoyoshi、Kuroda Shinya
- Journal Title
  
  iScience
  
  Volume: 7 Pages: 212-229
- DOI
  10.1016/j.isci.2018.07.022
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H05215, KAKENHI-PUBLICLY-17H06011, KAKENHI-PLANNED-17H06301, KAKENHI-PUBLICLY-18H04801, KAKENHI-ORGANIZER-18H05428, KAKENHI-PROJECT-18H04000, KAKENHI-PROJECT-16H04730, KAKENHI-PROJECT-16K12508, KAKENHI-PROJECT-17K19606, KAKENHI-ORGANIZER-17H06299, KAKENHI-PLANNED-17H06300, KAKENHI-PROJECT-15H05582, KAKENHI-PLANNED-16H06577
[Journal Article] Matrix rank minimization approach to signal recovery and nonlinear function estimation for nonlinear ARX model with input nonlinearity2017
- Author(s)
  Konishi Katsumi、Fujii Masashi、Kunida Katsuyuki、Uda Shinsuke、Kuroda Shinya
- Journal Title
  
  Proceedings of the 2017 Asian Control Conference
  
  Volume: - Pages: 1428-1431
- DOI
  10.1109/ascc.2017.8287382
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-16H01551
[Journal Article] Sparse Gaussian graphical model with missing values2017
- Author(s)
  Uda Shinsuke、Kubota Hiroyuki
- Journal Title
  
  Proceedings of the 21st Conference of Open Innovations Association
  
  Volume: - Pages: 336-343
- DOI
  10.23919/fruct.2017.8250201
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-16H01551, KAKENHI-PLANNED-16H06577
[Journal Article] System identification of signaling dependent gene expression with different time-scale data2017
- Author(s)
  Tsuchiya Takaho、Fujii Masashi、Matsuda Naoki、Kunida Katsuyuki、Uda Shinsuke、Kubota Hiroyuki、Konishi Katsumi、Kuroda Shinya
- Journal Title
  
  PLoS Computational Biology
  
  Volume: 13 Issue: 12 Pages: e1005913-e1005913
- DOI
  10.1371/journal.pcbi.1005913
- NAID
  120006555357
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K12508, KAKENHI-PROJECT-16K19028, KAKENHI-PUBLICLY-16H01551
[Journal Article] Laguerre filter analysis with partial least square regression reveals a priming effect of ERK and CREB on c-FOS induction2016
- Author(s)
  Kudo T, *Uda S, Tsuchiya T, Wada T, Karasawa Y, Fujii M, Saito T.H, Kuroda S.
- Journal Title
  
  PLOS ONE
  
  Volume: 11(8) Issue: 8 Pages: 1-20
- DOI
  10.1371/journal.pone.0160548
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-16H01551, KAKENHI-PROJECT-14J12344
[Journal Article] Analysis of cellular signal transduction from an information theoretic approach2016
- Author(s)
  Shinsuke Uda and Shinya Kuroda
- Journal Title
  
  Seminars in Cell & Developmental Biology
  
  Volume: 51 Pages: 24-31
- DOI
  10.1016/j.semcdb.2015.12.011
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25830142
[Journal Article] Selective control of up-regulated and down-regulated genes by temporal patterns and doses of insulin2016
- Author(s)
  Takanori Sano,* Kentaro Kawata, * Satoshi Ohno,* Katsuyuki Yugi, Hiroaki Kakuda, Hiroyuki Kubota, Shinsuke Uda, Masashi Fujii, Katsuyuki Kunida, Daisuke Hoshino, Atsushi Hatano, Yuki Ito,1 Miharu Sato, Yutaka Suzuki, Shinya Kuroda†
- Journal Title
  
  Science Signaling
  
  Volume: 9 Issue: 455
- DOI
  10.1126/scisignal.aaf3739
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-16H01551, KAKENHI-PROJECT-14J05223, KAKENHI-PROJECT-16K19028, KAKENHI-PROJECT-15H05582
[Journal Article] Glucose Homeostatic Law: Insulin Clearance Predicts the Progression of Glucose Intolerance in Humans2015
- Author(s)
  Kaoru Ohashi , Hisako Komada , Shinsuke Uda, Hiroyuki Kubota, Toshinao Iwaki, Hiroki Fukuzawa, Yasunori Komori, Masashi Fujii, Yu Toyoshima, Kazuhiko Sakaguchi, Wataru Ogawa, Shinya Kuroda
- Journal Title
  
  PLOS ONE
  
  Volume: 10 Issue: 12 Pages: e0143880-e0143880
- DOI
  10.1371/journal.pone.0143880
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-26120507
[Journal Article] Reconstruction of insulin signal flow from phosphoproteome and metabolome data2014
- Author(s)
  Yugi, K., Kubota, H., Toyoshima, Y., Noguchi, R., Kawata, K., Komori, Y., Uda, S., Kunida, K., Tomizawa, Y., Funato, Y., Miki, H., Matsumoto, M., Nakayama, K.I., Kashikura, K., Endo, K., Ikeda, K., Soga, T., Kuroda, S.
- Journal Title
  
  Cell Rep.
  
  Volume: 8 Issue: 4 Pages: 1171-1183
- DOI
  10.1016/j.celrep.2014.07.021
- NAID
  120005537752
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22134007, KAKENHI-PUBLICLY-25134714, KAKENHI-PROJECT-25290078, KAKENHI-PLANNED-26111007, KAKENHI-PUBLICLY-26112711, KAKENHI-PUBLICLY-26120507, KAKENHI-PROJECT-26291042, KAKENHI-PROJECT-26460364, KAKENHI-PROJECT-26640080, KAKENHI-PUBLICLY-26116721
[Journal Article] Robustness and Compensation of Information of Signaling Pathways.2013
- Author(s)
  Shinsuke Uda, Takeshi H Saito, Takamasa Kudo, Toshiya Kokaji, Takaho Tsuchiya, Hiroyuki Kubota, Yasunori Komori, Yu-ichi Ozaki, and Shinya Kuroda
- Journal Title
  
  Science
  
  Volume: 341 Issue: 6145 Pages: 558-561
- DOI
  10.1126/science.1234511
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24241067, KAKENHI-PROJECT-25830142
[Presentation] Distinct Steroid Profiles and its Effect on Bone Mass and Quality in Premenopausal Women with Autonomous Cortisol Secretion2023
- Author(s)
  〇Hiroshi Nakao, Kohta Nakatani, Maki Yokomoto-Umakoshi, Hironobu Umakoshi, Hiroki Kaneko, Norifusa Iwahashi, Masatoshi Ogata, Tazuru Fukumoto, Masamichi Fujita, Tatsuki Ogasawara, Yayoi Matsuda, Ryuichi Sakamoto, Yoshihiro Izumi, Takeshi Bamba, Yoshihiro Ogawa
- Organizer
  ENDO2023
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-22H05185
[Presentation] Trans-omic analysis of insulin response in the liver2022
- Author(s)
  Matsuzaki F., Uda S., Yamauchi Y., Kubota H.
- Organizer
  International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-20H04847
[Presentation] 1型糖尿病患者における血糖変動と自律神経活動の関連性について2021
- Author(s)
  小谷紀子，宇田新介，目黒周，久保田浩行，伊藤裕
- Organizer
  第64回日本糖尿病学会年次学術集会
- Data Source
  KAKENHI-PUBLICLY-20H04847
[Presentation] Comparison of hepatic responses to glucose perturbation between normal and obese mice using edge ontology2020
- Author(s)
  Yuki Ito, Shinsuke Uda, Toshiya Kokaji, Akiyoshi Hirayama, Tomoyoshi Soga, Yutaka Suzuki, Shinya Kuroda and Hiroyuki Kubota
- Organizer
  Fusion of Mathematics and Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H02431
[Presentation] Comparison of hepatic responses to glucose perturbation between normal and obese mice using edge ontology2020
- Author(s)
  Yuki Ito, Shinsuke Uda, Toshiya Kokaji, Akiyoshi Hirayama, Tomoyoshi Soga, Yutaka Suzuki, Shinya Kuroda and Hiroyuki Kubota
- Organizer
  Fusion of Mathematics and Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-20H04847
[Presentation] Comparison of hepatic metabolome and transcriptome responses to oral glucose tolerance test between normal and obese mice by information theoretic approach2019
- Author(s)
  Yuki Ito, Shinsuke Uda, Toshiya Kokaji, Akiyoshi Hirayama, Tomoyoshi Soga, Yutaka Suzuki, Shinya Kuroda and Hiroyuki Kubota
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PUBLICLY-18H04801
[Presentation] Comparison of hepatic metabolome and transcriptome responses to oral glucose tolerance test between normal and obese mice by information theoretic approach2019
- Author(s)
  Yuki Ito, Shinsuke Uda, Toshiya Kokaji, Akiyoshi Hirayama, Tomoyoshi Soga, Yutaka Suzuki, Shinya Kuroda and Hiroyuki Kubota
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-18H02431
[Presentation] Network structure inference by conditional independence2019
- Author(s)
  Shinsuke Uda
- Organizer
  第57回日本生物物理学会年会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04801
[Presentation] Sparse Gaussian Graphical Model with Missing Values2017
- Author(s)
  S.Uda and H.Kubota
- Organizer
  21st FRUCT Conference
- Data Source
  KAKENHI-PUBLICLY-16H01551
[Presentation] Matrix rank minimization approach to signal recovery and nonlinear function estimation for nonlinear ARX model with input nonlinearity2017
- Author(s)
  K.Konishi, M.Fujii, K.Kunida, S.Uda, S.Kuroda
- Organizer
  Control Conference (ASCC), 2017 11th Asian
- Data Source
  KAKENHI-PUBLICLY-16H01551
[Presentation] 定量的トランスオミクス解析の試み2017
- Author(s)
  松崎芙美子, 宇田新介, 久保田浩行
- Organizer
  定量生物学の会　第八回年会
- Place of Presentation
  岡崎
- Year and Date
  2017-01-08
- Data Source
  KAKENHI-PROJECT-15KT0108
[Presentation] An estimation method of sparse partial correlation matrix for omics data analysis2017
- Author(s)
  S.Uda and H. Kubota
- Organizer
  11th International Symposium of The Institute Network “Frontiers in Biomedical Sciences”
- Invited
- Data Source
  KAKENHI-PUBLICLY-16H01551
[Presentation] 細胞内情報伝達システムの情報理論的解析2016
- Author(s)
  宇田新介
- Organizer
  6.「生命動態の理解と制御のための基盤技術の創出」研究領域・第5回数理デザイン道場
- Place of Presentation
  東京
- Year and Date
  2016-02-19
- Invited
- Data Source
  KAKENHI-PROJECT-25830142
[Presentation] TBD2016
- Author(s)
  Shinsuke Uda
- Organizer
  第39回日本分子生物学会
- Place of Presentation
  横浜
- Year and Date
  2016-12-01
- Invited
- Data Source
  KAKENHI-PROJECT-25830142
[Presentation] Information Theoretical Analysis of Signaling Pathway2016
- Author(s)
  Shinsuke Uda
- Organizer
  The 6th Annual World Congress of Molecular & Cell Biology
- Place of Presentation
  Dalian, China
- Year and Date
  2016-04-26
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25830142
[Presentation] 欠損ありデータからの疎偏相関行列の推定法2016
- Author(s)
  宇田新介
- Organizer
  新学術領域研究「スパースモデリングの深化と高次元駆動データ科学の創成」平成28年度公開シンポジウム
- Place of Presentation
  慶應義塾大学三田キャンパス
- Data Source
  KAKENHI-PUBLICLY-16H01551
[Presentation] Estimation method of sparse partial correlation matrix from omics data set with missing values2015
- Author(s)
  Shinsuke Uda
- Organizer
  International Meeting on “High-Dimensional Data Driven Science” (HD3-2015)
- Place of Presentation
  Kyoto, Japan
- Year and Date
  2015-12-16
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-26120507
[Presentation] 健常及び肥満マウスの肝臓及び筋肉におけるグルコース負荷に対する代謝変動の網羅的解析2015
- Author(s)
  小鍛冶俊也、久保田浩行、伊藤有紀、柚木克之、藤井雅史、宇田新介、国田勝行、曽我朋義、黒田真也
- Organizer
  BMB2015 第38回日本分子生物学会年会　第88回日本生化学会大会　合同大会
- Place of Presentation
  神戸ポートアイランド
- Year and Date
  2015-12-02
- Data Source
  KAKENHI-PUBLICLY-26120507
[Presentation] Reconstruction of global network of insulin-dependent gene expression based on phosphoproteome and transcriptome data2015
- Author(s)
  Kentaro Kawata, Katsuyuki Yugi, Atsushi Hatano, Katsuyuki Kunida, Masashi Fujii, Satoshi Ohno, Yoko Tomizawa, Takanori Sano, Hiroaki Kakuda, Shinsuke Uda, Hiroyuki Kubota, Yutaka Suzuki, Masaki Matsumoto, Keiichi Nakayama and Shinya Kuroda
- Organizer
  International Conference on Systems Biology(ICSB2015)
- Place of Presentation
  Biopolis,Singapore
- Year and Date
  2015-11-23
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-26120507
[Presentation] インスリン刺激時における網羅的遺伝子発現調節ネットワークの再構築2015
- Author(s)
  川田健太郎、柚木克之、幡野敦、国田勝行、藤井雅史、大野聡、富沢瑶子、佐野貴規、角田裕晶、宇田新介、久保田浩行、鈴木壌、松本雅記、中山敬一、黒田真也
- Organizer
  BMB2015 第38回日本分子生物学会年会　第91回日本生化学会大会　合同大会
- Place of Presentation
  神戸ポートアイランド
- Year and Date
  2015-12-01
- Data Source
  KAKENHI-PUBLICLY-26120507
[Presentation] 欠損ありオミクスデータのための疎偏相関行列推定法2015
- Author(s)
  宇田新介
- Organizer
  第18回情報論的学習理論ワークショップ (IBIS2015)
- Place of Presentation
  つくば国際会議場
- Year and Date
  2015-11-26
- Data Source
  KAKENHI-PUBLICLY-26120507
[Presentation] インスリン時間パターン依存的な遺伝子発現の選択的応答2014
- Author(s)
  佐野貴規，川田健太郎，角田裕晶，久保田浩行，宇田新介，柚木克之，藤井雅史，国田勝行，星野太佑，鈴木穣，黒田真也
- Organizer
  第37回分子生物学会年会
- Place of Presentation
  横浜
- Year and Date
  2014-11-26
- Data Source
  KAKENHI-PUBLICLY-26120507
[Presentation] ヒトにおける糖代謝メカニズムのシステム生物学的解析2014
- Author(s)
  住友洋平，唐沢康暉，宇田新介，大橋郁，平山明由，曽我朋義，黒田真也
- Organizer
  第37回分子生物学会年会
- Place of Presentation
  横浜
- Year and Date
  2014-11-25
- Data Source
  KAKENHI-PUBLICLY-26120507
[Presentation] データドリブンモデルから解明するPC12細胞の神経分化誘導における細胞内シグナル伝達のデコーディングメカニズム2014
- Author(s)
  土屋貴穂，宇田新介，工藤隆将，唐沢康暉，黒田真也
- Organizer
  第37回分子生物学会年会
- Place of Presentation
  横浜
- Year and Date
  2014-11-26
- Data Source
  KAKENHI-PROJECT-25830142
[Presentation] データドリブンモデルから解明するPC12細胞の神経分化誘導における細胞内シグナル伝達のデコーディングメカニズム2014
- Author(s)
  土屋貴穂，宇田新介，工藤隆将，黒田真也
- Organizer
  第87回日本生化学会大会
- Place of Presentation
  京都
- Year and Date
  2014-10-17
- Data Source
  KAKENHI-PROJECT-25830142
[Presentation] Robustness and compensation of information transmission of signaling pathways despite perturbation2014
- Author(s)
  Shinsuke Uda and Shinya Kuroda
- Organizer
  The Joint Annual Meeting of the Japanese Society for Mathematical Biology and the Society for Mathematical Biology
- Place of Presentation
  Osaka
- Year and Date
  2014-07-30
- Invited
- Data Source
  KAKENHI-PROJECT-25830142
[Presentation] 疎性を用いた多階層ネットワークの同定2014
- Author(s)
  宇田新介
- Organizer
  新学術領域研究「スパースモデリングの深化と高次元データ駆動科学の創成」2014年度公開シンポジウム
- Place of Presentation
  東京工業大学　すずかけ台キャンパス
- Year and Date
  2014-12-16
- Data Source
  KAKENHI-PUBLICLY-26120507
[Presentation] Robustness and compensation of information transmission of signaling pathways despite perturbation2013
- Author(s)
  S. Uda, and S. Kuroda
- Organizer
  Workshop: Gradients and Signalling: from chemotaxis to development
- Place of Presentation
  沖縄科学技術大学院大学（沖縄県）
- Invited
- Data Source
  KAKENHI-PROJECT-25830142

1. Matsuzaki Fumiko (10631773)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
2. MATSUMOTO Masaki (60380531)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 今井哲郎 (10436173)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 久保田浩行 (40376603)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
5. 幡野敦 (30755533)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. 比嘉綱己 (60826238)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 和泉自泰 (70622166)

# of Collaborated Projects: 1 results

# of Collaborated Products: 6 results
8. Kuroda Shinya

# of Collaborated Projects: 0 results

# of Collaborated Products: 3 results
9. 唐沢康暉

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
10. 中山啓子

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
11. 中山敬一

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
12. 藤井雅史

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
13. 濱崎純

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
14. 井上啓

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
15. 曽我朋義

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Uda Shinsuke 宇田 新介

UDA SHINSUKE 宇田 新介

Research Projects

Research Products

Co-Researchers

Comprehensive identification of self-ligands and understanding of immune network formation through self-recognition

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Development of transomics data analysis methods based on information theoryPrincipal Investigator

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データ駆動アプローチからのトランスオミクスネットワーク推定法の開発Principal Investigator

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Deciphering positive and negative selection in thymocyte from information theoretic approachPrincipal Investigator

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多階層オミクスデータのためのネットワーク推定方法の開発Principal Investigator

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Elucidation of insulin signal transduction mechanism with mathematical analysis of network dynamics

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疎性を用いた多階層ネットワークの同定Principal Investigator

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Information theoretical analysis of signaling networkPrincipal Investigator

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[Journal Article] Modulation of host glutamine anabolism enhances the sensitivity of small cell lung cancer to chemotherapy.2023

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[Journal Article] Lipidome and metabolome analyses reveal metabolic alterations associated with MCF-7 cell apoptosis upon 4-hydroxytamoxifen treatment.2023

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[Journal Article] Improved 2,3-butanediol production rate of metabolically engineered Saccharomyces cerevisiae by deletion of RIM15 and activation of pyruvate consumption pathway.2023

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[Journal Article] TFEB-mediated lysosomal exocytosis alleviates high fat diet?induced lipotoxicity in the kidney.2023

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[Journal Article] Adrenal steroid metabolites and bone status in patients with adrenal incidentalomas and hypercortisolism.2023

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[Journal Article] Four features of temporal patterns characterize similarity among individuals and molecules by glucose ingestion in humans2022

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Uda Shinsuke 宇田新介

UDA SHINSUKE 宇田新介