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Sasai Masaki  笹井 理生

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SASAI Masaki  笹井 理生

笹井 理生  ササイ マサキ

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Researcher Number 30178628
Other IDs
External Links
Affiliation (Current) 2022: 京都大学, 福井謙一記念研究センター, 研究員
2022: 京都大学, 工学研究科, 研究員
2022: 名古屋大学, 情報学研究科, 招へい教員
Affiliation (based on the past Project Information) *help 2022: 名古屋大学, 情報学研究科, 招へい教員
2016 – 2021: 名古屋大学, 工学研究科, 教授
2011 – 2015: 名古屋大学, 工学(系)研究科(研究院), 教授
2010 – 2011: Nagoya University, 工学研究科, 教授
2006 – 2011: 名古屋大学, 大学院・工学研究科, 教授 … More
2008: Nagoya University, 大学院工学研究科, 教授
2006: Nagoya University, Graduate School of Engineering, Professor, 大学院工学研究科, 教授
2005: 名古屋大学, 大学院・情報科学研究科, 教授
2004: 名古屋大学, 情報科学研究科, 教授
2003: Nagoya University, Graduate School of Information Science, Professor, 大学院・情報科学研究科, 教授
1998 – 2002: 名古屋大学, 大学院・人間情報学研究科, 教授
1996 – 1997: 名古屋大学, 大学院・人間情報学研究科, 助教授
1992 – 1995: 名古屋大学, 人間情報学研究科, 助教授
1989: 岡崎国立共同研究機構, 分子科学研究所, 助手 Less
Review Section/Research Field
Principal Investigator
Biological Sciences / Science and Engineering / 物性一般(含基礎論) / Biophysics/Chemical physics / Biological physics/Chemical physics/Soft matter physics / Biophysics / Biophysics / Basic Section 13040:Biophysics, chemical physics and soft matter physics-related / Complex systems / Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
Except Principal Investigator
物理化学一般 / Mathematical physics/Fundamental condensed matter physics
Keywords
Principal Investigator
1 / エネルギーランドスケープ / 水素結合 / スピングラス / 蛋白質フォールディング / 分子モーター / 機能発現 / 機能ファネル / 分子動力学計算 / フォールディング … More / アロステリック変形 / 遺伝子ネットワーク / 蛋白質 / 相分離 / 進化シミュレーション / ゲノム立体構造 / ネットワーク / f雑音 / 巡回セールスマン問題 / 自己秩序臨界状態 / f-ノイズ / 蛋白質立体構造 / シグナル伝達 / 生物物理 / 国際情報交換アメリカ / クロマチン / ダイナミクス / Energy landscape / Molecular motor / シミュレーション / 水素統合 / 5ゆらぎ / 熱力学的異常 / セル・ダイナミックス / 溶液内反応 / 溶液反応 / 準安定状態 / 溶液内化学反応 / fゆらぎ / 水和 / 疎水相互作用 / 水溶液反応 / ランダムネットワーク / タンパク質フォールディング / 配列デザイン / デザイン / 蛋白質折れたたみ / 粗視化された分子動力学モデル / 蛋白質の水和構造 / 統計力学的モデル / バイオナノ素子 / エネルギーランドスケープ理論 / 遺伝子スイッチ / 確率的発現 / 生体ノイズ / リプレッシレーター / 経路積分法 / 細胞周期 / リミットサイクル / 大規模構造変形ダイナミクス / ナノバイオ / 統計力学 / 化学物理 / 自己組織化 / 生体分子 / 粗視化モデル / 統計力学理論 / フオールディング / ES細胞 / 揺らぎ / 国際情報交流アメリカ / ゲノム分子動力学 / 遺伝子スイッチの非断熱揺らぎ / 遺伝子制御ネットワーク理論 / クロマチン構造 / 非断熱揺らぎ / 遺伝子制御ネットワーク / ゲノムMD / アロステリック転移 / 概日周期 / 1分子運動論 / 反応システム理論 / 1分子運動論 / ゲノム / 分子動力学 / 転写制御 / 分子乱流 / fノイズ / f ゆらぎ / hydrogen bond / random network / moleculer turbulence / f-noise / ランダムペプチド / 実験室内進化 / 進化 / Simulated Evolution / Protein Folding / Spin Glass / Random Peptide / In Vitro Evolution / 液体ダイナミクス / 蛋白質ダイナミクス / 溶液の構造 / 化学反応 / ガラス転移 / 液体-液体転移 / 蛋白質デザイン / 水素結合ネットワーク / 水分子の協同運動 / 格子モデル / Liquid dynamics / Protein dynamics / Solution structure / Chemical reaction / Glass transition / Liquid-liquid transition / Protein design / 大規模構造変化 / フオールデイング / 計算機シミュレーション / Protein structure / Folding / Protein function / Large structural change / Signal transduction / Evolutionary design / 粗視化シミュレーション / 主成分分析 / アクトミオシン / 1分子計測 / ナノバイオマシン / 大規模構造変形 / Coarse-grained simulation / Functional funnel / Principal component analyses / 動的ランドスケープ / 粗視化動力学モデル / マルチスケールNMR測定 / 網羅的変異解析 / 網羅的変異測定 / ゲノムシミュレーション / 統計物理モデル / 生物リズム / 熱力学不確定性関係 / クロマチンドメイン / クロマチンダイナミクス / 転写ダイナミクス / ゲノム構造 … More
Except Principal Investigator
溶媒効果 / 化学反応 / 動力学的性質 / 水 / 集団運動 / 反応座標 / 多体系の力学 / ポテンシャル・エネルギ-曲面 / ガラス転移 / 構造ガラス / スピングラス / タンパク質のガラス化 / モード結合理論 / 自由エネルギーランドスケープ / メモリー効果 Less
  • Research Projects

    (34 results)
  • Research Products

    (357 results)
  • Co-Researchers

    (16 People)
  •  Principles of genome dynamics and DNA functionsPrincipal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      2022 – 2026
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
    • Research Institution
      Nagoya University
  •  4D genome architecture and transcription activity in cellsPrincipal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      2021 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      Nagoya University
  •  Stochastic thermodynamics of protein clockPrincipal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      2020 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      Nagoya University
  •  Genome physics: Principles of organization and dynamics of genome chromatinPrincipal Investigator

    • Principal Investigator
      Sasai Masaki
    • Project Period (FY)
      2019 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 13040:Biophysics, chemical physics and soft matter physics-related
    • Research Institution
      Nagoya University
  •  Phase separated molecular droplets and chromatin interactionsPrincipal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      2019 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      Nagoya University
  •  Functional regulation of protein soft machinesPrincipal Investigator

    • Principal Investigator
      Sasai Masaki
    • Project Period (FY)
      2016 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Biological physics/Chemical physics/Soft matter physics
    • Research Institution
      Nagoya University
  •  タンパク質物性から振動の理論生物学へPrincipal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      2014 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
  •  Genome structural dynamics and transcription regulationPrincipal Investigator

    • Principal Investigator
      SASAI Masaki
    • Project Period (FY)
      2014 – 2017
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Biological physics/Chemical physics/Soft matter physics
    • Research Institution
      Nagoya University
  •  Theories of fluctuation and regulation of eukaryotic gene switchesPrincipal Investigator

    • Principal Investigator
      SASAI Masaki
    • Project Period (FY)
      2012 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Biophysics/Chemical physics
    • Research Institution
      Nagoya University
  •  Statistical physics of dynamical transitions in ES cellsPrincipal Investigator

    • Principal Investigator
      SASAI Masaki
    • Project Period (FY)
      2011 – 2014
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Biophysics/Chemical physics
    • Research Institution
      Nagoya University
  •  Functional Funnel of Molecular MotorsPrincipal Investigator

    • Principal Investigator
      SASAI Masaki
    • Project Period (FY)
      2008 – 2011
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Biophysics/Chemical physics
    • Research Institution
      Nagoya University
  •  蛋白質の柔らかいダイナミクスの分子論Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      2006 – 2007
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
  •  Flexible dynamics and reactions in biomoleculesPrincipal Investigator

    • Principal Investigator
      SASAI Masaki
    • Project Period (FY)
      2006 – 2009
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
  •  ガラス転移の統一概念

    • Principal Investigator
      小田垣 孝
    • Project Period (FY)
      2006 – 2007
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Mathematical physics/Fundamental condensed matter physics
    • Research Institution
      Kyushu University
  •  遺伝子の確率的発現とネットワークPrincipal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      2004
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Nagoya University
  •  機能発現の蛋白質ダイナミクス理論Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      2004 – 2005
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
  •  Flexible dynamics of proteins and their functionsPrincipal Investigator

    • Principal Investigator
      SASAI Masaki
    • Project Period (FY)
      2004 – 2006
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Biophysics
    • Research Institution
      Nagoya University
  •  蛋白質機能発現のダイナミカルモデリングPrincipal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      2003
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Nagoya University
  •  蛋白質機能発現のダイナミカルモデリングPrincipal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      2002
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Nagoya University
  •  Protein functioning through large scale structural changesPrincipal Investigator

    • Principal Investigator
      SASAI Masaki
    • Project Period (FY)
      2001 – 2003
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Biophysics
    • Research Institution
      Nagoya University
  •  Dynamics in Condensed Molecular SystemsPrincipal Investigator

    • Principal Investigator
      SASAI Masaki
    • Project Period (FY)
      1999 – 2001
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas (A)
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
  •  動的インバースフォールディングと統計法則Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      1998
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas (A)
    • Research Institution
      Nagoya University
  •  動的インバースフォールディングと統計法則Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      1997
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Nagoya University
  •  Statistical Mechanical Approach to Protein Folding ProblemPrincipal Investigator

    • Principal Investigator
      SASAI Masaki
    • Project Period (FY)
      1997 – 1999
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      物性一般(含基礎論)
    • Research Institution
      Nagoya University
  •  動的インドースフォールディングと統計法則Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      1996
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Nagoya University
  •  溶液のネットワーク構造揺らぎと化学反応の統計理論Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      1995
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Nagoya University
  •  ネットワークのトポロジカル組み替え運動と分子乱流Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      1995
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Nagoya University
  •  動的インバースフォールディングと統計法則Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      1995
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Nagoya University
  •  溶液のネットワーク構造揺らぎと化学反応の統計理論Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      1994
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Nagoya University
  •  Molecular Turbulence : rearrangement dynamics of networkPrincipal Investigator

    • Principal Investigator
      SASAI Masaki
    • Project Period (FY)
      1994 – 1995
    • Research Category
      Grant-in-Aid for General Scientific Research (C)
    • Research Field
      物性一般(含基礎論)
    • Research Institution
      Nagoya University
  •  溶液のネットワーク構造揺らぎと化学反応の統計理論Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      1993
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Nagoya University
  •  ランダムネットワークの動力学と分子乱流Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      1993
    • Research Category
      Grant-in-Aid for Encouragement of Young Scientists (A)
    • Research Field
      物性一般(含基礎論)
    • Research Institution
      Nagoya University
  •  溶液のネットワーク構造揺らぎと化学反応の統計理論Principal Investigator

    • Principal Investigator
      笹井 理生
    • Project Period (FY)
      1992
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Nagoya University
  •  溶液内化学反応の理論;水の集団運動と溶媒作用

    • Principal Investigator
      大峰 巌
    • Project Period (FY)
      1990
    • Research Category
      Grant-in-Aid for General Scientific Research (C)
    • Research Field
      物理化学一般
    • Research Institution
      Okazaki National Research Institutes

All 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004 Other

All Journal Article Presentation Book

  • [Book] 物理科学, この1年(分担執筆)2020

    • Author(s)
      笹井理生
    • Total Pages
      4
    • Publisher
      丸善出版
    • ISBN
      9784621304860
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Book] Modeling of genomes, Chapter 9 in Coarse-Grained Modeling of Biomolecules2017

    • Author(s)
      Naoko Tokuda & Masaki Sasai
    • Total Pages
      36
    • Publisher
      CRC Press Taylor & Francis Group
    • ISBN
      1466576065
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Book] Modeling of genomes, Chapter 9 in Coarse-Grained Modeling of Biomolecules, ed. by G. Papoian2017

    • Author(s)
      N. Tokuda, M. Sasai
    • Total Pages
      26
    • Publisher
      CRC Press Taylor & Francis Group
    • ISBN
      9781466576063
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Book] Chapter 21, Coarse-Grained Modeling of Biomolecules2015

    • Author(s)
      Naoko Tokuda and Masaki Sasai
    • Total Pages
      20
    • Publisher
      Taylor & Francis Books
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Book] Chapter 21, Coarse-Grained Modeling of Biomolecules2015

    • Author(s)
      Naoko Tokuda and Masaki Sasai
    • Total Pages
      20
    • Publisher
      Taylor & Francis Books
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Book] Chapter 21, Coarse-Grained Modeling of Biomolecules2015

    • Author(s)
      Naoko Tokuda, Masaki Sasai
    • Total Pages
      20
    • Publisher
      Taylor & Francis Books
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Book] 生体分子のつくるシステム 「ゲノム系計算科学(計算科学講座第7巻)」2013

    • Author(s)
      笹井理生、寺田智樹
    • Total Pages
      27
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Book] 生体分子のつくるシステム 「ゲノム系計算科学(計算科学講座第7巻)」2013

    • Author(s)
      笹井理生、寺田智樹
    • Total Pages
      27
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Book] 論文にみる最重要概念と革新実験データ,巨大分子系の計算化学2012

    • Author(s)
      笹井理生
    • Publisher
      日本化学会編
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Book] 細胞の物理生物学2011

    • Author(s)
      ロブ・フィリップス他著,笹井理生,伊藤一仁,千見寺浄慈,寺田智樹訳
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Book] 超多自由度系の新しい科学2010

    • Author(s)
      笹井理生
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Book] 超多自巾度系の新しい科学2010

    • Author(s)
      笹井理生, 伊藤一仁, 佐々木尚
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Book] タンパク質の論理,超多自由度系の新しい科学,笹井理生編,(計算科学講座第10巻)2010

    • Author(s)
      笹井理生,伊藤一仁,佐々木尚
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Book] タンパク質の論理(「超多自由度系の新しい科学」)2010

    • Author(s)
      笹井理生, 伊藤一仁, 佐々木尚
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Book] 計算科学の考え方,超多自由度系の新しい科学,笹井理生編,(計算科学講座第10巻)2010

    • Author(s)
      笹井理生
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Book] 蛋白質の柔らかなダイナミクス2008

    • Author(s)
      笹井理生
    • Publisher
      培風館
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Book] 蛋白質の柔らかなダイナミクス2008

    • Author(s)
      笹井理生
    • Total Pages
      192
    • Publisher
      培風館
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Mechanism of autonomous synchronization of the circadian KaiABC rhythm2021

    • Author(s)
      Sasai Masaki
    • Journal Title

      Scientific Reports

      Volume: 11 Pages: 1-12

    • DOI

      10.1038/s41598-021-84008-z

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PUBLICLY-19H05258, KAKENHI-PUBLICLY-20H05530, KAKENHI-PROJECT-19H01860
  • [Journal Article] Generation of dynamic three-dimensional genome structure through phase separation of chromatin2021

    • Author(s)
      Shin Fujishiro and Masaki Sasai
    • Journal Title

      bioRxiv

      Volume: 該当なし Pages: 1-23

    • DOI

      10.1101/2021.05.06.443035

    • Open Access
    • Data Source
      KAKENHI-PUBLICLY-21H00248, KAKENHI-PROJECT-19H01860
  • [Journal Article] Role of the reaction-structure coupling in temperature compensation of the KaiABC circadian rhythm2021

    • Author(s)
      Sasai Masaki
    • Journal Title

      bioRxiv

      Volume: 該当無し Pages: 1-19

    • DOI

      10.1101/2021.10.11.464015

    • Open Access
    • Data Source
      KAKENHI-PUBLICLY-20H05530, KAKENHI-PUBLICLY-21H00248, KAKENHI-PROJECT-19H01860
  • [Journal Article] Stochastic epigenetic dynamics of gene switching2020

    • Author(s)
      Bhattacharyya Bhaswati、Wang Jin、Sasai Masaki
    • Journal Title

      Physical Review E

      Volume: 102 Pages: 1-9

    • DOI

      10.1103/physreve.102.042408

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-19H05258, KAKENHI-PUBLICLY-20H05530, KAKENHI-PROJECT-19H01860
  • [Journal Article] Probability Landscape of Coupled Epigenetic and Genetic Network with Eddy-Like Probability Currents2020

    • Author(s)
      Bhattacharyya B, Sasai M
    • Journal Title

      Biophysical Journal

      Volume: 118

    • DOI

      10.1016/j.bpj.2019.11.1626

    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Journal Article] Heterogeneous fluid-like movements of chromatin and their implications to transcription.2020

    • Author(s)
      Ashwin SS, Maeshima K, Sasai M.
    • Journal Title

      Biophys Rev.

      Volume: 12 Issue: 2 Pages: 461-468

    • DOI

      10.1007/s12551-020-00675-8

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19H01860, KAKENHI-PUBLICLY-19H05258, KAKENHI-PUBLICLY-19H05273, KAKENHI-PROJECT-16H06279
  • [Journal Article] Organization of fast and slow chromatin revealed by single-nucleosome dynamics.2019

    • Author(s)
      Ashwin SS, Nozaki T, Maeshima K, Sasai M.
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 116 Pages: 19939-19944

    • DOI

      10.1073/pnas.1907342116

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PUBLICLY-19H05273, KAKENHI-PROJECT-19H01860, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-19H05258
  • [Journal Article] Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase Ⅱ.2019

    • Author(s)
      Nagashima, R., Hibino, K., Ashwin, S. S., Babokhov, M., Fujishiro, S., Imai, R., Nozaki, T., Tamura, S., Tani, T., Kimura, H., Shribak, M., Kanemaki, M. T., Sasai, M., Maeshima, K.
    • Journal Title

      Journal of Cell Biology

      Volume: 218 Issue: 5 Pages: 1511-1530

    • DOI

      10.1083/jcb.201811090

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217, KAKENHI-PROJECT-16J07205, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-18K19962
  • [Journal Article] Effects of Stochastic Single-Molecule Reactions on Coherent Ensemble Oscillations in the KaiABC Circadian Clock2019

    • Author(s)
      M Sasai
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 123 Pages: 702-713

    • DOI

      10.1021/acs.jpcb.8b10584

    • NAID

      120006623809

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Journal Article] Single-molecular and ensemble-level oscillations of cyanobacterial circadian clock2018

    • Author(s)
      S Das, TP Terada, M Sasai
    • Journal Title

      BIOPHYSICS

      Volume: 15 Issue: 0 Pages: 136-150

    • DOI

      10.2142/biophysico.15.0_136

    • NAID

      130006745268

    • ISSN
      2189-4779
    • Language
      English
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Journal Article] Role of ATP Hydrolysis in Cyanobacterial Circadian Oscillator2017

    • Author(s)
      S. Das, T. P. Terada, & M. Sasai
    • Journal Title

      Scientific Reports

      Volume: 7

    • DOI

      10.1038/s41598-017-17717-z

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H02217, KAKENHI-PROJECT-26610130
  • [Journal Article] Heterogeneous spatial distribution of transcriptional activity in budding yeast nucle2017

    • Author(s)
      N. Tokuda & M. Sasai
    • Journal Title

      Biophysical Journal

      Volume: 112 Pages: 491-504

    • DOI

      10.1016/j.bpj.2016.11.3201

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-16H02217, KAKENHI-PROJECT-26610130
  • [Journal Article] Importance of consensus region of multiple-ligand templates in a virtual screening method2016

    • Author(s)
      Tatsuya Okuno, Koya Kato, Shintaro Minami, Tomoki P. Terada, Masaki Sasai, and George Chikenji
    • Journal Title

      Biophysics and Physicobiology

      Volume: 未定

    • NAID

      130005165373

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Journal Article] 真核細胞のルースな遺伝子制御とクロマチン動態2016

    • Author(s)
      笹井理生,寺田智樹
    • Journal Title

      生物物理

      Volume: 56 Pages: 106-108

    • NAID

      130005140932

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Journal Article] Liquid-like behavior of chromatin.2016

    • Author(s)
      Kazuhiro Maeshima, Satoru Ide, Kayo Hibino and Masaki Sasai
    • Journal Title

      Current Opinion in Genetics and Development.

      Volume: 37 Pages: 36-45

    • DOI

      10.1016/j.gde.2015.11.006

    • NAID

      120005822509

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-26610130, KAKENHI-PUBLICLY-15H01361, KAKENHI-PLANNED-23115005
  • [Journal Article] Cooperativity and modularity in protein folding2016

    • Author(s)
      M. Sasai, G. Chikenji, & T. P. Terada
    • Journal Title

      BIOPHYSICS

      Volume: 13 Issue: 0 Pages: 281-293

    • DOI

      10.2142/biophysico.13.0_281

    • NAID

      130005284044

    • ISSN
      2189-4779
    • Language
      English
    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-16H02217, KAKENHI-PROJECT-26610130
  • [Journal Article] Importance of consensus region of multiple-ligand templates in a virtual screening method2016

    • Author(s)
      T. Okuno, K. Kato, S. Minami, T. P. Terada, M. Sasai, & G. Chikenji
    • Journal Title

      BIOPHYSICS

      Volume: 13 Issue: 0 Pages: 149-156

    • DOI

      10.2142/biophysico.13.0_149

    • NAID

      130005165373

    • ISSN
      2189-4779
    • Language
      English
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Journal Article] Effects of collective histone state dynamics on epigenetic landscape and kinetics of cell reprogramming2015

    • Author(s)
      S. S. Ashwin and Masaki Sasai
    • Journal Title

      Scientific Reports

      Volume: 5

    • DOI

      10.1038/srep16746

    • NAID

      120005822508

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-26610130, KAKENHI-PUBLICLY-26102520
  • [Journal Article] VS-APPLE: A virtual screening algorithm using promiscuous protein-ligand complexes2015

    • Author(s)
      Cong Chen, Kun Zhang, Haidong Feng, Masaki Sasai and Jin Wang
    • Journal Title

      J. Chemical Information and Modeling

      Volume: 17 Pages: 1108-1119

    • DOI

      10.1039/c5cp04780c

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130, KAKENHI-PUBLICLY-26102520
  • [Journal Article] Coupling of lever arm swing and biased Brownian motion in actomyosin2014

    • Author(s)
      Nie, QM., Togashi, A., Sasaki, TN., Takano, M., Sasai, M., Terada, TP
    • Journal Title

      PLoS Comp. Biol.

      Volume: 10

    • DOI

      10.1371/journal.pcbi.1003552

    • NAID

      120005476003

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PLANNED-21113006, KAKENHI-PUBLICLY-23118716, KAKENHI-PROJECT-23654147, KAKENHI-PROJECT-24244068, KAKENHI-PUBLICLY-26102520
  • [Journal Article] Folding pathway of a multidomain protein depends on its topology of domain connectivity2014

    • Author(s)
      Takashi Inanami, Tomoki P. Terada, and Masaki Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 111 Pages: 15969-15974

    • DOI

      10.1073/pnas.1406244111

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-23654147, KAKENHI-PROJECT-24244068, KAKENHI-PUBLICLY-26102520
  • [Journal Article] Conformational flexibility of loops of myosin enhances global bias in the actin-myosin interaction landscape2014

    • Author(s)
      Qing-Miao Nie, Masaki Sasai, and Tomoki P. Terada
    • Journal Title

      Phys. Chem. Chem. Phys.

      Volume: 16 Pages: 6441-6447

    • DOI

      10.1039/c3cp54464h

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Journal Article] Eddy current and coupled landscapes for nonadiabatic and nonequilibrium complex system dynamics2013

    • Author(s)
      Kun Zhang, Masaki Sasai, Jin Wang
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 110 Pages: 14930-14935

    • DOI

      10.1073/pnas.1305604110

    • NAID

      120005476002

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23654147, KAKENHI-PROJECT-24244068
  • [Journal Article] Entropic mechanism of allosteric communication in conformational transitions of dihydrofolate reductase2013

    • Author(s)
      Tomoki P. Terada, Toru Kimura, and Masaki Sasai
    • Journal Title

      J. Phys. Chem. B

      Volume: 117 Pages: 12864-12877

    • DOI

      10.1021/jp402071m

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Journal Article] Time scales in epigenetic dynamics and phenotypic heterogeneity of embryonic stem cells2013

    • Author(s)
      Masaki Sasai, Yudai Kawabata, Koh Makishi, Kazuhito Itoh, and Tomoki P. Terada
    • Journal Title

      PLoS Comp. Biol.

      Volume: 9

    • DOI

      10.1371/journal.pcbi.1003380

    • NAID

      120005476001

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23654147, KAKENHI-PROJECT-24244068
  • [Journal Article] Non-Brownian dynamics and strategy of amoeboid cell locomotion.2012

    • Author(s)
      S. I. Nishimura, M. Ueda, and M. Sasai
    • Journal Title

      Physical Review E

      Volume: 85 Pages: 041909-041909

    • DOI

      10.1103/physreve.85.041909

    • NAID

      120005476000

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23654147, KAKENHI-PROJECT-24244068, KAKENHI-ORGANIZER-22111001
  • [Journal Article] Dynamical modeling of 3D genome organization in interphase budding yeast2012

    • Author(s)
      N. Tokuda, T. P. Terada, and M. Sasai
    • Journal Title

      Biophys. J.

      Volume: Vol.102, No.2 Pages: 296-304

    • DOI

      10.1016/j.bpj.2011.12.005

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068, KAKENHI-PROJECT-23654147
  • [Journal Article] The fragment-based consistency score in model quality assessment for de novo prediction of protein structures2011

    • Author(s)
      H.Cetin, T.N.Sasaki, M.Sasai
    • Journal Title

      Chem-Bio Informatics Journal

      Volume: 11 Pages: 63-81

    • NAID

      130004138123

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] De novo protein structure prediction by dynamic fragment assembly and conformational space annealing2011

    • Author(s)
      J. Lee, J. Lee, T. N. Sasaki, M. Sasai, C. Seok, and J. Lee
    • Journal Title

      Proteins : Structure, Function, and Bioinformatics

      Volume: Vol.79, No.8 Pages: 2403-2417

    • DOI

      10.1002/prot.23059

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Statistical mechanics of protein allostery : Roles of backbone and side-chain structural fluctuations2011

    • Author(s)
      K. Itoh and M. Sasai
    • Journal Title

      J. Chem. Phys.

      Volume: Vol.134, No.12

    • DOI

      10.1063/1.3565025

    • NAID

      120005475998

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Statistical mechanics of protein allostery : Free energy surface and conformational transitions2011

    • Author(s)
      K.Itoh, M.Sasai
    • Journal Title

      J.Chem.Phys.

      Volume: 134

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Statistical mechanics of protein allostery : Free energy surface and conformational transitions2011

    • Author(s)
      K. Itoh, M. Sasai
    • Journal Title

      J.Chem.Phys 134

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Roles of DNA looping in enhancer-blocking activity2011

    • Author(s)
      N. Tokuda, M. Sasai, and G. Chikenji
    • Journal Title

      Biophys. J.

      Volume: Vol.100, No.1 Pages: 126-134

    • DOI

      10.1016/j.bpj.2010.11.016

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Roles of DNA looping in enhancer-blocking activity2011

    • Author(s)
      N.Tokuda, M.Sasai, G.Chikenji
    • Journal Title

      Biophys.J.

      Volume: 100 Pages: 126-134

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] The fragment-based consistency score in model quality assessment for de novo prediction of protein structures2011

    • Author(s)
      H. Cetin, T. N. Sasaki, and M. Sasai
    • Journal Title

      Chem-Bio Informatics Journal

      Volume: Vol.11 Pages: 63-81

    • NAID

      130004138123

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor2010

    • Author(s)
      M. Takano, T.P. Terada, M. Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA

    • NAID

      120005475997

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] de Novo Protein Structure Prediction using Fragment Based Potential and Conformational Space Annealing2010

    • Author(s)
      Juyong Lee, M. Sasai, C. Seok, Jooyoung Lee
    • Journal Title

      Biophys. J. 98,Issue3

    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor2010

    • Author(s)
      M. Takano, T. P. Terada, and M. Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: Vol.107, No.17 Pages: 7769-7774

    • DOI

      10.1073/pnas.0911830107

    • NAID

      120005475997

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068, KAKENHI-PLANNED-21113006
  • [Journal Article] Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor2010

    • Author(s)
      M.Takano, T.P.Terada, M.Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA (掲載決定)

    • NAID

      120005475997

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Entropic mechanism of large fluctuation in allosteric transition2010

    • Author(s)
      K. Itoh, M. Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA

    • NAID

      120005475996

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Entropic mechanism of large fluctuation in allosteric transition2010

    • Author(s)
      K. itoh, M. Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA 107

      Pages: 7775-7780

    • NAID

      120005475996

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] De Novo Protein Structure Prediction using Fragment Based Potential and Conformational Space Annealing2010

    • Author(s)
      Juyong Lee, M.Sasai, C.Seok, Jooyoung Lee
    • Journal Title

      Biophys.J 98

    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] de Novo Protein Structure Prediction using Fragment Based Potential and Conformational Space Annealing2010

    • Author(s)
      Juyong Lee, M.Sasai, C.Seok, Jooyoung Lee
    • Journal Title

      Biophys.J. 98

    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Entropic mechanism of large fluctuation in allosteric transition2010

    • Author(s)
      K.Itoh, M.Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA (掲載決定)

    • NAID

      120005475996

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Unidirectional Brownian motion observed in an In silica single molecule experiment of an actomyosin motor2010

    • Author(s)
      M. Takano, T. P. Terada, M. Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA 107

      Pages: 7769-7774

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Synchronizaion of circadian oscillation of phosphorylation level of KaiC in vitro2010

    • Author(s)
      T. Nagai, T.P. Terada, M. Sasai
    • Journal Title

      Biophys. J. 98,No.11

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Synchronizaion of circadian oscillation of phosphorylation level of KaiC in vitro2010

    • Author(s)
      T.Nagai, T.P.Terada, M.Sasai
    • Journal Title

      Biophys.J.

      Volume: 98 Pages: 2469-2477

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Synchronizaion of circadian oscillation of phosphorylation level of KaiC2010

    • Author(s)
      T. Nagai, T. P. Terada, and M. Sasai
    • Journal Title

      Biophys. J.

      Volume: Vol.98, No.11 Pages: 2469-2477

    • DOI

      10.1016/j.bpj.2010.02.036

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Entropic mecha-nism of large fluctuation in allosteric transition2010

    • Author(s)
      K. Itoh and M. Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: Vol.107, No.17 Pages: 7775-7780

    • DOI

      10.1073/pnas.0912978107

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Stable, precise, and reproducible patterning of bicoid and hunchback molecules in the early Drosophila embryo2009

    • Author(s)
      Y. Okabe-Oho, H. Murakami, S. Oho, M. Sasai
    • Journal Title

      PLoS Comp. Biol. 5,No.8

    • NAID

      120005475994

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Cortical factor feedback model of cellular locomotion and cytofission2009

    • Author(s)
      S. I. Nishimura, M. Ueda and M. Sasai
    • Journal Title

      PLoS Computational Biology 5

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Multi-dimensional theory of protein folding2009

    • Author(s)
      K.Itoh, M.Sasai
    • Journal Title

      J.Chem.Phys. 130

    • NAID

      120001804820

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Multi-dimensional theory of protein folding2009

    • Author(s)
      K. Itoh, M. Sasai
    • Journal Title

      J. Chem. Phys. 130,No.14

    • NAID

      120001804820

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Cortical factor feedback model of cellular locomotion and cytofission2009

    • Author(s)
      S. I. Nishimura, M. Ueda, M. Sasai
    • Journal Title

      PLoS Computational Biology 5

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Cortical factor feedback model for cellular locomotion and cytofission2009

    • Author(s)
      S. I. Nishimura, M. Ueda, and M. Sasai
    • Journal Title

      PLoS Comp. Biol.

      Volume: Vol.5, No.3

    • DOI

      10.1371/journal.pcbi.1000310

    • NAID

      120005475993

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Stable, precise, and reproducible patterning of bicoid and hunchback molecules in the early Drosophila embryo2009

    • Author(s)
      Y.Okabe-Oho, H.Murakami, S.Oho, M.Sasai
    • Journal Title

      PLoS Comp.Biol. 5

    • NAID

      120005475994

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Multi-dimensional theory of protein folding2009

    • Author(s)
      K.Itoh, M.Sasai
    • Journal Title

      J.Chem.Phys. 130

    • NAID

      120001804820

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Multi-dimensional theory of protein folding2009

    • Author(s)
      K. Itoh and M. Sasai
    • Journal Title

      J. Chem. Phys

      Volume: Vol.130, No.14

    • DOI

      10.1063/1.3097018

    • NAID

      120001804820

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Cortical factor feedback model of cellular locomotion and cytofission2009

    • Author(s)
      S.I. Nishimura, M. Ueda, M. Sasai
    • Journal Title

      PLoS Comp. Biol. 5,No.3

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Cooperativity, connectivity, and folding pathways of multidomain proteins2008

    • Author(s)
      K.Itoh and M.Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA. 105

      Pages: 13865-13870

    • NAID

      120005475995

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Cooperativity, connectivity, and folding pathways of multidomain proteins2008

    • Author(s)
      K. Itoh, M. Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA. 105

      Pages: 13865-13870

    • NAID

      120005475995

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Cooperativity, connectivity, and folding pathways of multidomain proteins2008

    • Author(s)
      K. Itch, M. Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA 105

      Pages: 3865-13870

    • NAID

      120005475995

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Mechanism of robust circadian oscillation of KaiC phosphorylation2008

    • Author(s)
      K. Eguchi, M. Yoda, T. P. Terada, and M. Sasai
    • Journal Title

      Biophys. J.

      Volume: Vol.95, No.4 Pages: 1773-1784

    • DOI

      10.1529/biophysj.107.127555

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction2008

    • Author(s)
      T.N.Sasaki, H.Cetin, and M.Sasai
    • Journal Title

      Biochem.Biophys.Research Comm. 369

      Pages: 500-506

    • NAID

      120005475992

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction2008

    • Author(s)
      T. N. Sasaki, H. Cetin, and M. Sasai
    • Journal Title

      Biochem. Biophys. Research Comm. 369

      Pages: 500-506

    • NAID

      120005475992

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Journal Article] Cooperativity, connectivity, and folding pathways of multidomain proteins2008

    • Author(s)
      K. Itoh and M. Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA 105

      Pages: 13865-13870

    • NAID

      120005475995

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Cooperativity, connectivity, and folding pathways of multidomain proteins2008

    • Author(s)
      K. Itoh, M. Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA 105

      Pages: 13865-13870

    • NAID

      120005475995

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction2008

    • Author(s)
      T.N. Sasaki, H. Cetin, M. Sasai
    • Journal Title

      Biochem. Biophys. Research Comm. 369

      Pages: 500-506

    • NAID

      120005475992

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction2008

    • Author(s)
      T. N. Sasaki, H. Cetin, and M. Sasai
    • Journal Title

      Biochem. Biophys. Research Comm

      Volume: Vol.369, No.2 Pages: 500-506

    • DOI

      10.1016/j.bbrc.2008.02.048

    • NAID

      120005475992

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Mechanism of robust circadian oscillation of KaiC phosphorylation in vitro2008

    • Author(s)
      K. Eguchi, M. Yoda, T. P. Terada and M. Sasai
    • Journal Title

      Biophysical Journal 95

      Pages: 1773-1784

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Cooperativity, connectivity, and folding pathways of multidomain proteins2008

    • Author(s)
      K. Itoh and M. Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: Vol.105, No.37

    • DOI

      10.1073/pnas.0804512105

    • NAID

      120005475995

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Mechanism of robust circadian oscillation of KaiC phosphorylation in vitro2008

    • Author(s)
      K. Eguchi, M. Yoda, T. P. Terada, M. Sasai
    • Journal Title

      Biophysical Journal 95

      Pages: 1773-1784

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Journal Article] Fluctuating hydration structure around nanometer-size hydrophobic solutes II -Caging and drying around single-wall carbon nanotubes-2007

    • Author(s)
      T.Hotta, and M.Sasai
    • Journal Title

      J.Phys.Chem. C 111

      Pages: 2861-2871

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Fluctuating hydration structure around nanometer-size hydrophobic solutes II-Caging and drying around single-wall carbon nanotubes-2007

    • Author(s)
      T.Hotta, M.Sasai
    • Journal Title

      J. Phys. Chem. C 111-7

      Pages: 2861-2871

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Stable stochastic dynamics in yeast cell cycle2007

    • Author(s)
      Y. Okabe and M. Sasai
    • Journal Title

      Biophys. J. 93

      Pages: 3451-3459

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Journal Article] Monomer-shuffling and allosteric transition in circadian oscillation of KaiC phosphorylation2007

    • Author(s)
      M. Yoda, K. Eguchi, T.P. Terada, and M. Sasai
    • Journal Title

      PLoS ONE 2

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Fluctuating hydration structure around nanometer-size hydrophobic solutes II-Caging and drying around single-wall carbon nanotubes-2007

    • Author(s)
      T.Hotta, M.Sasai
    • Journal Title

      J. Phys. Chem. C 111・7

      Pages: 2861-2871

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Modulation of the reaction rate of regulating protein induces large morphological and motional change of amoebic cell2007

    • Author(s)
      S.I.Nishimura, M.Sasai
    • Journal Title

      J. Theor. Biol. 245・2

      Pages: 230-237

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Fluctuating hydration structure around nanometer-size hydrophobic solutes II -Caging and drying around single-wall carbon nanotubes-2007

    • Author(s)
      T.Hotta, M.Sasai
    • Journal Title

      J. Phys. Chem. C 111・7

      Pages: 2861-2871

    • Data Source
      KAKENHI-PROJECT-18031017
  • [Journal Article] Modulation of the reaction rate of regulating protein induces large morphological and motional change of amoebic cell2007

    • Author(s)
      S.I.Nishimura, M.Sasai
    • Journal Title

      J. Theor. Biol. 245・2

      Pages: 230-237

    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Fluctuating hydration structure around nanometer-size hydrophobic solutes II -Caging and drying around single-wall carbon nanotubes-2007

    • Author(s)
      T. Hotta, M. Sasai
    • Journal Title

      J. Phys. Chem. C 111

      Pages: 2861-2871

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Roles of noise in single and coupled multiple genetic oscillators2007

    • Author(s)
      M.Yoda, T.Ushikubo, W.Inoue, M.Sasai
    • Journal Title

      J. Chem. Phys. 126

    • NAID

      120002410545

    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Roles of noise in single and coupled multiple genetic oscillators2007

    • Author(s)
      M.Yoda, T.Ushikubo, W.Inoue, and M.Sasai
    • Journal Title

      J.Chem.Phys. 126

    • NAID

      120002410545

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Effects of the DNA state fluctuation on single-cell dynamics of self-regulating gene2007

    • Author(s)
      Y. Okabe, Y. Yagi, M. Sasai
    • Journal Title

      J. Chem. Phys. 127

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Roles of noise in single and coupled multiple genetic oscillators2007

    • Author(s)
      M. Yoda, T. Ushikubo, W. Inoue, M. Sasai
    • Journal Title

      J. Chem. Phys. 126

    • NAID

      120002410545

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Fluctuating hydration structure around nanometer-size hydrophobic solutes II - Caging and drying around single-wall carbon nanotubes -2007

    • Author(s)
      T.Hotta, M.Sasai
    • Journal Title

      J. Phys. Chem. C 111・7

      Pages: 2861-2871

    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Monomer-shuffling and allosteric transition in circadian oscillation of KaiC phosphorylation2007

    • Author(s)
      M. Yoda, K. Eguchi, T.P. Terada, M. Sasai
    • Journal Title

      PLoS ONE 2

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Effects of the DNA state fluctuation on single-cell dynamics of self-regulating gene2007

    • Author(s)
      Y. Okabe, Y. Yagi, and M. Sasai
    • Journal Title

      J. Chem. Phys 127

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Effects of the DNA state fluctuation on single-cell dynamics of self-regulating gene2007

    • Author(s)
      Y.Okabe, Y.Yagi, and M.Sasai
    • Journal Title

      J.Chem.Phys. 127

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Monomer-shuffling and allosteric transition in circadian oscillation of KaiC phosphorylation2007

    • Author(s)
      M.Yoda, K.Eguchi, T.P.Terada, and M.Sasai
    • Journal Title

      PLoS ONE 2 e408-1-8

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Modulation of the reaction rate of regulating protein induces large morphological and motional change of amoebic cell2007

    • Author(s)
      S.I.Nishimura, M.Sasai
    • Journal Title

      J. Theor. Biol. 245-2

      Pages: 230-237

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Testing the transition state theory in stochastic dynamics of a genetic switch2006

    • Author(s)
      T.Ushikubo, W.Inoue, M.Yoda, M.Sasai
    • Journal Title

      Chem. Phys. Lett. 430・1

      Pages: 139-143

    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] 蛋白三次元構造の初期進化のメカニズム2006

    • Author(s)
      長尾知生子, 笹井理生
    • Journal Title

      生体の科学 57・5

      Pages: 370-371

    • Data Source
      KAKENHI-PROJECT-18031017
  • [Journal Article] Flexibly varying folding mechanism of a nearly symmetrical protein: B domain of protein A2006

    • Author(s)
      K. Itoh, M. Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA 103

      Pages: 7298-7303

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Flexibly varying folding mechanism of a nearly symmetrical protein : B domain of protein A2006

    • Author(s)
      K.Itoh, M.Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA 103-19

      Pages: 7298-7303

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] 蛋白質の機能発現と柔らかいダイナミクス2006

    • Author(s)
      笹井理生
    • Journal Title

      物性研究 80・5

      Pages: 630-634

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] Flexibly varying folding mechanism of a nearly symmetrical protein : B domain of protein A2006

    • Author(s)
      K.Itoh and M.Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA 103

      Pages: 7298-7303

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Flexibly varying folding mechanism of a nearly symmetrical protein : B domain of protein A2006

    • Author(s)
      K.Itoh, M.Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA 103・19

      Pages: 7298-7303

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Testing the transition state theory in stochastic dynamics of a genetic switch2006

    • Author(s)
      T.Ushikubo, W.Inoue, M.Yoda, and M.Sasai
    • Journal Title

      Chem.Phys.Lett. 430

      Pages: 139-143

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] Testing the transition state theory in stochastic dynamics of a genetic switch2006

    • Author(s)
      T. Ushikubo, W. Inoue, M. Yoda, M. Sasai
    • Journal Title

      Chem. Phys. Lett. 430

      Pages: 139-143

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Journal Article] 蛋白質の機能発現と柔らかいダイナミクス2006

    • Author(s)
      笹井理生
    • Journal Title

      物性研究 80・5

      Pages: 630-634

    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Correlation between evolutionary structural development and protein folding2005

    • Author(s)
      C.Nagao, T.P.Terada, T.Yomo, M.Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA 102-52

      Pages: 18950-18955

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Inertia of Amoebic Cell Locomotion as an Emergent Collective Property of the Cellular Dynamics2005

    • Author(s)
      S.I.Nishimura, M.Sasai
    • Journal Title

      Phys.Rev.E Vol.71

      Pages: 10902-10902

    • Data Source
      KAKENHI-PROJECT-16014210
  • [Journal Article] Stochastic Fluctuation and Relaxation in a Genetic Feedback Loop2005

    • Author(s)
      Y.Okabe, Y.Yagi, M.Sasai
    • Journal Title

      European Biophysics Journal 34・6

      Pages: 602-602

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] Correlation Between Evolutionary Structural Development and Protein Folding.2005

    • Author(s)
      C.Nagao, T.P.Terada, T.Yomo, M.Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA 102・52

      Pages: 18950-18955

    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Self Consistent Proteomic Field Theory of Stochastic Gene Switches2005

    • Author(s)
      A.M.Walczak, M.Sasai, P.G.Wolynes
    • Journal Title

      Biophys.J. Vol.88,No.2

      Pages: 828-850

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] Correlation between evolutionary structural development and protein folding2005

    • Author(s)
      C.Nagao, T.P.Terada, T.Yomo, M.Sasai
    • Journal Title

      Proc. Natl. Acad. Sci. USA 102・52

      Pages: 18950-18955

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Stable Stochastic Dynamics in Yeast Cell Cycle2005

    • Author(s)
      Y.Okabe, M.Sasai
    • Journal Title

      European Biophysics Journal 34・6

      Pages: 601-601

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] Self Consistent Proteomic Field Theory of Stochastic Gene Switches2005

    • Author(s)
      A.M.Walczak, M.Sasai, P.G.Wolynes
    • Journal Title

      Biophys.J. Vol.88,No.2

      Pages: 828-850

    • Data Source
      KAKENHI-PROJECT-16014210
  • [Journal Article] Fluctuating Hydration Structure around Nanometer-Size Hydrophobic Solutes I2005

    • Author(s)
      T.Hotta, A.Kimura, M.Sasai
    • Journal Title

      J.Phys.Chem.B 109・39

      Pages: 18600-18608

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] Correlation Between Evolutionary Structural Development and Protein Folding2005

    • Author(s)
      C.Nagao, T.P.Terada, T.Yomo, M.Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA 102・52

      Pages: 18950-18955

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] A Coarse-Grained Langevin Molecular Dynamics Approach to Protein Structure Reproduction2005

    • Author(s)
      T.N.Sasaki, M.Sasai
    • Journal Title

      Chem.Phys.Lett. Vol.402,No.1-3

      Pages: 102-106

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] Chemotaxis of a Eukaryotic Cell in Complex Gradients of Chemoattractant2005

    • Author(s)
      S.I.Nishimura, M.Sasai
    • Journal Title

      Artificial Life and Robotics 9・3

      Pages: 123-127

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] A Coarse-Grained Langevin Molecular Dynamics Approach to Protein Structure Reproduction2005

    • Author(s)
      T.N.Sasaki, M.Sasai
    • Journal Title

      Chem.Phys.Lett. Vol.402, No.1-3

      Pages: 102-106

    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Self Consistent Proteomic Field Theory of Stochastic Gene Switches2005

    • Author(s)
      A.M.Walczak, M.Sasai, P.G.Wolynes
    • Journal Title

      Biophys.J. Vol.88, No.2

      Pages: 828-850

    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Coupling of Functioning and Folding : Photoactive Yellow Protein as an Example System2004

    • Author(s)
      K.Itoh, M.Sasai
    • Journal Title

      Chem.Phys. Vol.307 No.2-3

      Pages: 121-127

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] Dynamical Transition and Proteinquake in Photoactive Yellow Protein2004

    • Author(s)
      K.Itoh, M.Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA Vol.101,No.41

      Pages: 14736-14741

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] On the Model Granularity to Simulate Protein Dynamics : A biological physics view on biomolecular computing2004

    • Author(s)
      M.Takano, J.Higo, H.K.Nakamura, M.Sasai
    • Journal Title

      Natural Computing Vol.4,No.4

      Pages: 377-393

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] Scrutinizing the Squeezed Exponential Kinetics Observed in the Folding Simulation of an Off-lattice Go-like Protein Model2004

    • Author(s)
      H.K.Nakamura, M.Sasai, M.Takano
    • Journal Title

      Chem.Phys. Vol.307 No.2-3

      Pages: 259-267

    • Data Source
      KAKENHI-PROJECT-16041221
  • [Journal Article] On the Model Granularity to Simulate Protein Dynamics : A biological physics view on biomolecular computing2004

    • Author(s)
      M.Takano, J.Higo, H.K.Nakamura, M.Sasai
    • Journal Title

      Natural Computing Vol.4, No.4

      Pages: 377-393

    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Inertia of Chemotactic Motion as an Emergent Property in a Model of Eukaryotic Cell2004

    • Author(s)
      S.I.Nishimura, M.Sasai
    • Journal Title

      Artificial Life Vol.9

      Pages: 410-414

    • Data Source
      KAKENHI-PROJECT-16014210
  • [Journal Article] Dynamical Transition and Proteinquake in Photoactive Yellow Protoin.2004

    • Author(s)
      K.Itoh, M.Sasai
    • Journal Title

      Proc.Natl.Acad.Sci.USA Vol.101, No.41

      Pages: 14736-14741

    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Scrutinizing the Squeezed Exponential Kinetics Observed in the Folding Simulation of an Off-lattice Go-like Protein Model2004

    • Author(s)
      H.K.Nakamura, M.Sasai, M.Takano
    • Journal Title

      Chem.Phys. Vol.307 No.2-3

      Pages: 259-267

    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] Coupling of Functioning and Folding : Photoactive, Yellow Protein as an Example System2004

    • Author(s)
      K.Itoh, M.Sasai
    • Journal Title

      Chem.Phys. Vol.307 No.2-3

      Pages: 121-127

    • Data Source
      KAKENHI-PROJECT-16207008
  • [Journal Article] ゆらぎと柔らかさの物理としての生物物理

    • Author(s)
      笹井理生
    • Journal Title

      日本物理学会誌

      Volume: Vol.63, No.10 Pages: 810-811

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] エッジ距離を用いた遺伝子制御ネットワークの解析2022

    • Author(s)
      堀池由朗、藤城新、笹井理生
    • Organizer
      日本物理学会第77回年次大会
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] The role of dynamic cohesin looping in chromatin compaction and phase separation2022

    • Author(s)
      Shin Fujishiro and Masaki Sasai
    • Organizer
      The 30th Hot Spring Harbor International Symposium
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] エッジ距離を用いた遺伝子制御ネットワークの解析2022

    • Author(s)
      堀池由朗, 藤城新, 笹井理生
    • Organizer
      日本物理学会第77回年次大会
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] 高密度ソフトコア系の平均場ポテンシャルヘシアンと混合自由エネルギー2022

    • Author(s)
      藤城新, 笹井理生
    • Organizer
      日本物理学会第77回年次大会
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] 高密度ソフトコア系の平均場ポテンシャルヘシアンと混合自由エネルギー2022

    • Author(s)
      藤城新、笹井理生
    • Organizer
      日本物理学会第77回年次大会
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] The role of dynamic cohesin looping in chromatin compaction and phase separation2022

    • Author(s)
      Shin Fujishiro and Masaki Sasai
    • Organizer
      The 30th Hot Spring Harbor International Symposium
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] カメレオンモデルによるアデニル酸キナーゼの構造転移の研究2021

    • Author(s)
      吉田樹生、笹井理生、寺田智樹
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] カメレオンモデルによるアデニル酸キナーゼの構造転移の研究2021

    • Author(s)
      吉田樹生、笹井理生、寺田智樹
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] Free energy landscape analysis of conformational transition of NtrC by chameleon model2021

    • Author(s)
      永田大晴、笹井理生、寺田智樹
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] Free energy landscape analysis of conformational transition of NtrC by chameleon model2021

    • Author(s)
      永田大晴、笹井理生、寺田智樹
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] A minimal model to understanding heterogeneous dynamics in live cell2021

    • Author(s)
      S.S. Ashwin, Ryosuke Nagashima, Kazuhiro Maeshima, Masaki Sasai
    • Organizer
      RIKEN BDR Symposium 2021
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] Boolean modeling and state analysis of gene regulatory networks2021

    • Author(s)
      堀池由朗、藤城新、笹井理生
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] クロマチン相分離による動的なゲノム構造形成2021

    • Author(s)
      藤城新、笹井理生
    • Organizer
      第1回 ゲノム生物物理学セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] Boolean modeling and state analysis of gene regulatory networks2021

    • Author(s)
      堀池由朗、藤城新、笹井理生
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] 4Dゲノムアーキテクチュア:細胞核のなかのポリマー凝縮系2021

    • Author(s)
      藤城 新, 笹井 理生
    • Organizer
      日本化学会 第101春季年会
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] Effects of epigenetic modifications on the intermediate states of epithelial-mesenchymal transitions2021

    • Author(s)
      萩原剣一、笹井理生
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] 拡散的ループ形成によるクロマチン相分離2021

    • Author(s)
      藤城新、笹井理生
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] KaiABC振動における温度補償性1分子レベルのフィードバックループ2021

    • Author(s)
      笹井理生
    • Organizer
      第59回日本生物物理学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] クロマチン相分離による動的なゲノム構造形成2021

    • Author(s)
      藤城新 笹井理生
    • Organizer
      第1回 ゲノム生物物理学セミナー
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] 4Dゲノムアーキテクチャと細胞の転写活性2021

    • Author(s)
      笹井理生
    • Organizer
      新学術領域研究「クロマチン潜在能」第4回 領域会議
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] Effects of epigenetic modifications on the intermediate states of epithelial-mesenchymal transitions2021

    • Author(s)
      萩原剣一、笹井理生
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] 拡散的ループ形成によるクロマチン相分離2021

    • Author(s)
      藤城新、笹井理生
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] KaiABC振動における温度補償性1分子レベルのフィードバックループ2021

    • Author(s)
      笹井理生
    • Organizer
      第59回日本生物物理学会年会
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-21H00248
  • [Presentation] タンパク質概日リズム振動の情報物理学2021

    • Author(s)
      笹井理生
    • Organizer
      新学術領域研究「生命の情報物理学」ランチミーティング
    • Data Source
      KAKENHI-PUBLICLY-20H05530
  • [Presentation] A minimal model to understanding heterogeneous dynamics in live cell2021

    • Author(s)
      S.S. Ashwin, Ryosuke Nagashima, Kazuhiro Maeshima, Masaki Sasai
    • Organizer
      RIKEN BDR Symposium 2021
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] KaiABC振動における温度補償性1分子レベルのフィードバックループ2021

    • Author(s)
      笹井理生
    • Organizer
      第59回日本生物物理学会年会
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-20H05530
  • [Presentation] 4Dゲノムアーキテクチュア:細胞核のなかのポリマー凝縮系2021

    • Author(s)
      藤城 新, 笹井 理生
    • Organizer
      日本化学会 第101春季年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] タンパク質概日リズム振動の情報物理学2020

    • Author(s)
      笹井 理生
    • Organizer
      生命の情報物理学ランチミーティング
    • Data Source
      KAKENHI-PUBLICLY-20H05530
  • [Presentation] Probability landscape of coupled epigenetic and genetic network with eddy-like probability currents2020

    • Author(s)
      B. Bhattacharyya, M. Sasai
    • Organizer
      The Biophysical Society Annual Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] Stochastic dynamics of transcription and chromatin movement2020

    • Author(s)
      Masaki Sasai
    • Organizer
      Statistical Biological Physics: From single molecule to cell
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] A landscape-based view on the stepping movement of myosin VI2020

    • Author(s)
      T. P. Terada, Q.-M. Nie, M. Sasai
    • Organizer
      The Biophysical Society Annual Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] Problems in the KaiABC circadian clock2020

    • Author(s)
      笹井 理生
    • Organizer
      生命の情報物理学(IPB)セミナー
    • Data Source
      KAKENHI-PUBLICLY-20H05530
  • [Presentation] Stochastic dynamics of transcription and chromatin movement2020

    • Author(s)
      Masaki Sasai
    • Organizer
      Statistical Biological Physics: From single molecule to cell
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-20H05530
  • [Presentation] 相分離による分子液滴クラスター形成とクロマチン相互作用2020

    • Author(s)
      笹井 理生
    • Organizer
      クロマチンポテンシャル領域会議
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] 3D genome organization through entropy-driven phase separation of chromatin2020

    • Author(s)
      藤城 新, 笹井 理生
    • Organizer
      第58回日本生物物理学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] Entropic phase separation of chromatin domains to form chromosome compartments2020

    • Author(s)
      藤城 新, 笹井 理生
    • Organizer
      第58回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] A landscape-based view on the stepping movement of myosin VI2020

    • Author(s)
      T. P. Terada, Q.-M. Nie, M. Sasai
    • Organizer
      The Biophysical Society Annual Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] Model construction of chromatin structure formation and RNA transport near the nuclear membrane2020

    • Author(s)
      今井 望, 藤城 新, 笹井 理生
    • Organizer
      第58回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] Probability landscape of coupled epigenetic and genetic network with eddy-like probability currents2020

    • Author(s)
      B. Bhattacharyya, M. Sasai
    • Organizer
      The Biophysical Society Annual Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] Stochastic dynamics of transcription and chromatin movement2020

    • Author(s)
      Masaki Sasai
    • Organizer
      Statistical Biological Physics: From single molecule to cell
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] タンパク質概日リズム振動の情報物理学2020

    • Author(s)
      笹井 理生
    • Organizer
      生命の情報物理学領域会議
    • Data Source
      KAKENHI-PUBLICLY-20H05530
  • [Presentation] 3D genome organization through entropy-driven phase separation of chromatin2020

    • Author(s)
      藤城 新, 笹井 理生
    • Organizer
      第58回日本生物物理学会年会
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] How Chemical Free Energy is Used for Synchronization2019

    • Author(s)
      M. Sasai
    • Organizer
      14th Asia-Pacific Physics Conference
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] A landscape-based view on the stepping movement of myosin VI2019

    • Author(s)
      T. P. Terada, Q.-M. Nie, M. Sasai
    • Organizer
      Joint 12th EBSA, 10th ICBP-IUPAP Biophysics Congress
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] 染色体脱凝縮シミュレーションによるヒト間期核組織化の理解2019

    • Author(s)
      藤城新、笹井理生
    • Organizer
      第1回クロマチン潜在能ワークショップ
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] クロマチン構造とRNA輸送経路が協調して形成される過程2019

    • Author(s)
      今井望、藤城新、笹井理生
    • Organizer
      第1回クロマチン潜在能ワークショップ
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] How Chemical Free Energy is Used for Synchronization2019

    • Author(s)
      M. Sasai
    • Organizer
      14th Asia-Pacific Physics Conference
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] クロマチン構造とRNA輸送経路が協調して形成される過程2019

    • Author(s)
      今井望、 藤城新、 笹井理生
    • Organizer
      第1回クロマチン潜在能ワークショップ
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] Organization of interphase human nucleus via simulated chromosome decondensation2019

    • Author(s)
      S. Fujishiro, M. Sasai
    • Organizer
      第57回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-19H01860
  • [Presentation] 染色体脱凝縮シミュレーションによるヒト間期核組織化の理解2019

    • Author(s)
      藤城新、 笹井理生
    • Organizer
      第1回クロマチン潜在能ワークショップ
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] エピジェネティックな状態変化が細胞のがん化に及ぼす影響の ランドスケープ理論による解析2019

    • Author(s)
      亀山裕太郎、 笹井理生
    • Organizer
      第1回クロマチン潜在能ワークショップ
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] A landscape-based view on the stepping movement of myosin VI2019

    • Author(s)
      T. P. Terada, Q.-M. Nie, M. Sasai
    • Organizer
      Joint 12th EBSA, 10th ICBP-IUPAP Biophysics Congress
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-19H05258
  • [Presentation] Inferring chromatin packing properties from the dynamical characterization of nucleosomes in live cells2018

    • Author(s)
      SS Ashwin, T Nozaki, K Maeshima, M Sasai
    • Organizer
      International Conference on Advances in Physics of Emergent Orders in Fluctuation
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Free energy landscape for the Brownian motion of the leading head of myosin VI during the stepping motion2018

    • Author(s)
      TP Terada, Q-M Nie, M Sasai
    • Organizer
      第56回生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] ATPase activity of individual KaiC molecules decisively influences the ensemble-level oscillation of cyanobacterial KaiABC clock2018

    • Author(s)
      S Das, TP Terada, M Sasai
    • Organizer
      第56回生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Heterogeneous chromatin accessibility establishes human nuclear organization2018

    • Author(s)
      S Fujishiro, M Sasai
    • Organizer
      Workshop on Chromatin Biophysics
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Diversification of P-loop protein structure simulated by imposing the functional requirement as a selection pressure2018

    • Author(s)
      K Inukai, M Sasai, G Chikenji
    • Organizer
      第56回生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Free energy landscape for the Brownian motion of the leading head of myosin VI during the stepping motion2018

    • Author(s)
      TP Terada, Q-M Nie, M Sasai
    • Organizer
      the 2nd workshop on Advances in Theory and Computation of Complex Systems - Biological Systems
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] A study on conformational transition of adenylate kinase with an improved chameleon model2018

    • Author(s)
      R Mori, M Ito, TP Terada, M Sasai
    • Organizer
      第56回生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Heterogeneous repulsive interactions among local chromatin regions is responsible for the three-dimensional organization of human genome2018

    • Author(s)
      S Fujishiro, M Sasai
    • Organizer
      Nuclear Organization & Function
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Molecular simulation of protein conformational transition using a two-structure based model2018

    • Author(s)
      M Ito, R Mori, TP Terada, M Sasai
    • Organizer
      第56回生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] カメレオンモデル: タンパク質の構造転移理解のための複数の天然構造を用いたGo モデルの拡張2018

    • Author(s)
      伊藤真志保, 笹井理生, 寺田智樹
    • Organizer
      第18回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Inferring chromatin packing from the dynamical characterization of nucleosomes in live cells2018

    • Author(s)
      SS Ashwin, T Nozaki, K Maeshima, M Sasai
    • Organizer
      Workshop on Chromatin Biophysics
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Role of dynamical DNA methylation in gene regulation2017

    • Author(s)
      Masaki Sasai
    • Organizer
      International Conference on Biological Physics 2017
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Characterization of the pathways and transition states of conformational transition of NtrC by the chameleon model2017

    • Author(s)
      S. Abe, M. Sasai, T. P. Terada
    • Organizer
      第55回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] The 3D Genome Architecture and Transcriptional Regulation2017

    • Author(s)
      S. Fujishiro, M. Sasai
    • Organizer
      Gordon Research Conference on Stochastic Physics in Biology
    • Place of Presentation
      カリフォルニア州、ベンチュラ市
    • Year and Date
      2017-01-08
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Genome folding: Analogy to protein folding problems2017

    • Author(s)
      M. Sasai
    • Organizer
      The Third Korean-Polish Conference on "Protein Folding:Theoretical and Experimental Approaches"
    • Place of Presentation
      High-1 Resort, Korea
    • Year and Date
      2017-02-05
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] カメレオンモデルを用いたNtrCの構造転移機構についての研究2017

    • Author(s)
      阿部真也、水野敦、笹井理生、寺田 智樹
    • Organizer
      平成28年度生物物理学会中部支部講演会
    • Place of Presentation
      名古屋大学
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Physical bases of 3D genome organization2017

    • Author(s)
      Masaki Sasai
    • Organizer
      CDB Seminar
    • Invited
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] The phase-separation principle of human genome architecture2017

    • Author(s)
      S. Fujishiro, M. Sasai
    • Organizer
      第55回日本生物物理学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Simulated diversification of the P-loop protein fold through functional selection2017

    • Author(s)
      K. Inukai, M. Sasai, G. Chikenji
    • Organizer
      第55回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] The phase-separation principle of human genome folding2017

    • Author(s)
      S. Fujishiro, M. Sasai
    • Organizer
      CSRC Workshop on DNA Chromosome Structure and Dynamics
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] The phase-separation principle of human genome folding2017

    • Author(s)
      Masaki Sasai
    • Organizer
      CSRC Workshop on DNA Chromosome Structure and Dynamics
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Role of dynamical DNA methylation in gene regulation2017

    • Author(s)
      S.S. Ashwin, M. Sasai
    • Organizer
      International Conference on Biological Physics 2017
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Genome folding: Analogy to protein folding problems2017

    • Author(s)
      M. Sasai
    • Organizer
      The Third Korean-Polish Conference on "Protein Folding: Theoretical and Experimental Approaches"
    • Place of Presentation
      韓国、High-1リゾート
    • Year and Date
      2017-02-05
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] The 3D Genome Architecture and Transcriptional Regulation2017

    • Author(s)
      M. Sasai
    • Organizer
      Gordon Research Conference on Stochastic Physics in Biology
    • Place of Presentation
      Ventura, CA
    • Year and Date
      2017-01-08
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] A stochastic simulation study on the mechanism of correlation between circadian oscillation and ATPase activity of KaiC hexamer2017

    • Author(s)
      S. Das, S. Hashimoto, T. P. Terada, M. Sasai
    • Organizer
      第55回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Mechanism of conformational transition of NtrC studied by using chameleon model2016

    • Author(s)
      S. Abe, A. Mizuno, M. Sasai, T. P. Terada
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] 3D Genome Architecture Inferred from Epigenome2016

    • Author(s)
      S. Fujishiro, M. Sasai
    • Organizer
      The 3rd International Conference on Computational Science and Engineering
    • Place of Presentation
      ベトナム、ホーチミン市
    • Year and Date
      2016-11-28
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Mechanisms for the misregulated gene expression in the yku70 esc1 mutant of budding yeast.2016

    • Author(s)
      Naoko Tokuda, Masaki Sasai
    • Organizer
      第54回日本生物物理学会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Invited
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Role of interdomain communication in pacemaking circadian rhythm studied by a single molecule model of KaiC2016

    • Author(s)
      S. Hashimoto, S. Das, M. Sasai, T. P. Terada
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] 3D Genome Architecture Inferred from Epigenome2016

    • Author(s)
      Shin Fujishiro, Masaki Sasai
    • Organizer
      The 3rd International Conference on Computational Science and Engineering
    • Place of Presentation
      Ho Chi Minh City, Vietnam
    • Year and Date
      2016-11-28
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Dynamical Energy Landscape Perspective of Protein Functioning2016

    • Author(s)
      M. Sasai
    • Organizer
      2nd Polish-Korean Conference
    • Place of Presentation
      ポーランド、グダンスク市
    • Year and Date
      2016-05-28
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02217
  • [Presentation] Fluctuating Three-Dimensional Genome Architecture and Gene Regulation2016

    • Author(s)
      Masaki Sasai
    • Organizer
      Gordon Research Conference on Protein Folding Dynamics
    • Place of Presentation
      ガルベストン市、テキサス州
    • Year and Date
      2016-01-10
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Genome folding inferred from epigenome2016

    • Author(s)
      Shin Fujishiro, Masaki Sasai
    • Organizer
      第39回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2016-11-30
    • Invited
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] 蛋白質機能発現の動的エネルギーランドスケープ理論2015

    • Author(s)
      笹井理生
    • Organizer
      第359回 CBI学会研究講演会
    • Place of Presentation
      東京大学
    • Year and Date
      2015-02-24
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] Multi-funnel view of protein folding2015

    • Author(s)
      Masaki Sasai
    • Organizer
      The First Korean-Polish Conference on "Protein Folding: Theoretical and Experimental Approaches"
    • Place of Presentation
      ソウル
    • Year and Date
      2015-05-24
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] Eukaryotic chromatin folding and gene regulation2015

    • Author(s)
      Masaki Sasai
    • Organizer
      3rd International Workshop on Theoretical and Computational Physics
    • Place of Presentation
      ダラット市, ベトナム
    • Year and Date
      2015-07-27
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Chromatin Domains and Heterogeneous Transcription Activities2015

    • Author(s)
      N. Tokuda, S. Fujishiro and M. Sasai
    • Organizer
      International Symposium on Chromatin Structure, Dynamics and Function
    • Place of Presentation
      兵庫県淡路
    • Year and Date
      2015-08-23
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Fluctuations and histone state dynamics on topology of epigenetic landscape2015

    • Author(s)
      Ashwin S. S. and Masaki Sasai
    • Organizer
      New Frontiers in Non-equilibrium Statistical Physics
    • Place of Presentation
      京都
    • Year and Date
      2015-08-17
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Eddy current flow of probability in stochastic gene expression dynamics in eukaryotes2015

    • Author(s)
      Baswati Bhattacharyya and Masaki Sasai
    • Organizer
      New Frontiers in Non-equilibrium Statistical Physics
    • Place of Presentation
      京都
    • Year and Date
      2015-08-17
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Eukaryotic gene regulation and chromosome architecture2015

    • Author(s)
      Masaki Sasai
    • Organizer
      CSRC Workshop on Kinetics of Enzymes and Molecular Machines
    • Place of Presentation
      北京
    • Year and Date
      2015-08-18
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Dynamical energy landscape perspective on protein functioning2015

    • Author(s)
      Masaki Sasai, Tomoki P Terada, Qing-Miao Nie
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015 (PACIFICHEM2015)
    • Place of Presentation
      ホノルル
    • Year and Date
      2015-12-15
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] Interdomain communication as the mechanism of correlation between circadian oscillation of KaiC phosphorylation and ATPase activity2015

    • Author(s)
      Shota Hashimoto, Das Sumita, Masaki Sasai, Tomoki P. Terada
    • Organizer
      日本生物物理学会第53回年会
    • Place of Presentation
      金沢大学
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] 分子モーターの時空間スケール2015

    • Author(s)
      笹井理生
    • Organizer
      第6回分子モーター討論会
    • Place of Presentation
      東京大学
    • Year and Date
      2015-06-13
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] タンパク質物性から振動の理論生物学へ2015

    • Author(s)
      Sumita Das、橋本翔多、寺田智樹、笹井理生
    • Organizer
      新学術領域「動的秩序と機能」全体班会議
    • Place of Presentation
      兵庫県淡路
    • Year and Date
      2015-08-04
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] A stochastic simulation study on circadian oscillation and ATPase activity of KaiC hexamer2015

    • Author(s)
      Sumita Das, Shota Hashimoto, Tomoki P. Terada, Masaki Sasai
    • Organizer
      日本生物物理学会第53回年会
    • Place of Presentation
      金沢大学
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] 蛋白質機能発現の動的エネルギーランドスケープ理論2015

    • Author(s)
      笹井理生
    • Organizer
      第359回 CBI学会研究講演会
    • Place of Presentation
      東京大学
    • Year and Date
      2015-02-24
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] Dynamical Landscapes of motors and enzymes2014

    • Author(s)
      Masaki Sasai
    • Organizer
      Macromolecular dynamics: structure, function and diseases
    • Place of Presentation
      Beijing
    • Year and Date
      2014-06-27
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] Computational Models for Chromatin Structure and Gene Expression2014

    • Author(s)
      Masaki Sasai, Naoko Tokuda, and Shin Fujishiro
    • Organizer
      The 2nd International Symposium of the Mathematics on Chromatin Live Dynamics
    • Place of Presentation
      広島大学
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] Computational Models for Chromatin Structure and Gene Expression2014

    • Author(s)
      Masaki Sasai, Naoko Tokuda, and Shin Fujishiro
    • Organizer
      The 2nd International Symposium of the Mathematics on Chromatin Live Dynamics
    • Place of Presentation
      広島大学
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] Allosteric dynamics of proteins,2014

    • Author(s)
      Masaki Sasai
    • Organizer
      Macromolecular dynamics: structure, function and diseases
    • Place of Presentation
      Beijing
    • Year and Date
      2014-07-01
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] Non-adiabatic gene switching and fluctuations in ES cells2013

    • Author(s)
      Masaki Sasai
    • Organizer
      Computational Methods for Bio and Complex Systems
    • Place of Presentation
      ソウル
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] Fluctuating dynamics of 3D genome organization2013

    • Author(s)
      Masaki Sasai
    • Organizer
      The 2nd KIAS Conference on Subcellular Dynamics
    • Place of Presentation
      Korea Institute for Advanced Study, Seoul for Advanced Study, Seoul
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] Non-adiabatic gene switching and fluctuations in ES cells2013

    • Author(s)
      Masaki Sasai
    • Organizer
      Computational Methods for Bio and Complex Systems
    • Place of Presentation
      Korea Institute for Advanced Study, Seoul
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] Time scales in epigenetic dynamics and landscapes2013

    • Author(s)
      Masaki Sasai
    • Organizer
      Physical Principles and Underlying Mechanisms of Biomolecules and Materials
    • Place of Presentation
      北京
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] Epigenetic dynamics of eukaryotic cells2013

    • Author(s)
      Masaki Sasai
    • Organizer
      35th Annual International Conference of the IEEE Engineering of Medicine and Biology Society
    • Place of Presentation
      大阪
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] Epigenetic dynamics of eukaryotic cells2013

    • Author(s)
      Masaki Sasai
    • Organizer
      35th Annual International Conference of the IEEE Engineering of Medicine and Biology Society
    • Place of Presentation
      Osaka International Convention Center
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] Time scales in epigenetic dynamics and landscapes2013

    • Author(s)
      Masaki Sasai
    • Organizer
      Physical Principles and Underlying Mechanisms of Biomolecules and Materials
    • Place of Presentation
      Chinese Adademy of Science, Beijing
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] Slow dynamics of chromatins and non-adiabatic gene switches2012

    • Author(s)
      M. Sasai
    • Organizer
      Characterizing Landscapes: From Biomolecules to Cellular Networks
    • Place of Presentation
      Telluride, Colorado
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] Slow dynamics of chromatins and non-adiabatic gene switches2012

    • Author(s)
      M. Sasai
    • Organizer
      Characterizing Landscapes: From Biomolecules to Cellular Networks
    • Place of Presentation
      Telluride, Colorado
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] ミオシンVIのアクチンフィラメント上の運動の粗視化モデルによる自由エネルギ2012

    • Author(s)
      池尾眞人、笹井理生、佐々木尚、寺田智樹
    • Organizer
      2012年生体運動研究合同班会議
    • Place of Presentation
      筑波大学(茨城県)
    • Year and Date
      2012-01-06
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] ミオシンVIのアクチンフィラメント上の運動の粗視化モデルによる自由エネルギー解析2012

    • Author(s)
      池尾眞人、笹井理生、佐々木尚、寺田智樹
    • Organizer
      2012年生体運動研究合同班会議
    • Place of Presentation
      筑波大学
    • Year and Date
      2012-01-06
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Heterogeneous dynamics and fluctuations in biomolecular networks2012

    • Author(s)
      M. Sasai
    • Organizer
      RIKEN Quantitative Biology Center Inaugural Symposium
    • Place of Presentation
      Kobe
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] Epigenetic switches and network transitions2012

    • Author(s)
      M. Sasai
    • Organizer
      2012 March Meeting of the American Physical Society
    • Place of Presentation
      Boston
    • Year and Date
      2012-02-28
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Heterogeneous dynamics and fluctuations in biomolecular networks2012

    • Author(s)
      M. Sasai
    • Organizer
      RIKEN Quantitative Biology Center Inaugural Symposium "Towards Whole-Cell Modeling"
    • Place of Presentation
      Kobe
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] Revisiting the consistency principle of protein conformational change2012

    • Author(s)
      M. Sasai
    • Organizer
      12th KIAS Conference on Protein Structure and Function
    • Place of Presentation
      Seoul, Korea
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] Epigenetic switches and network transitions2012

    • Author(s)
      M. Sasai
    • Organizer
      2012 March Meeting of the American Physical Society(招待講演)
    • Place of Presentation
      Boston, USA
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] Revisiting the consistency principle of protein conformational change2012

    • Author(s)
      M. Sasai
    • Organizer
      12th KIAS Conference on Protein Structure and Function
    • Place of Presentation
      Seoul
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] Statistical mechanical perspective of allosteric transition of proteins2011

    • Author(s)
      T.P.Terada, K.Itoh, M.Takano, M.Sasai
    • Organizer
      The 1st KIAS Conference on Subcellular Dynamics
    • Place of Presentation
      Seoul (Korea)(招待講演)
    • Year and Date
      2011-07-25
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] The chameleon model : a novel approach to conformational transitions of proteins2011

    • Author(s)
      Tomoki P. Terada, Takahiro Yamashita, Shogo Yokota, Toru Kimura, Masaki Sasai
    • Organizer
      The 1st KIAS Conference on Subcellular Dynamics
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2011-07-25
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Biological networks : multiple scales and heterogeneities in switching dynamics2011

    • Author(s)
      M. Sasai
    • Organizer
      第49回日本生物物理学会
    • Place of Presentation
      兵庫県立大学
    • Year and Date
      2011-09-16
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Statistical mechanical per-spective of allosteric transition of proteins2011

    • Author(s)
      M. Sasai
    • Organizer
      The 1st KIAS Conference on Subcellular Dynamics
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2011-07-25
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Cooperativity and flexibility in protein allostery2011

    • Author(s)
      K. Itoh and M. Sasai
    • Organizer
      The 11th KIAS Conference on Protein Structure and Function
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2011-10-06
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] 計算生物学:分子から細胞そして個体へ2011

    • Author(s)
      笹井理生
    • Organizer
      岡崎統合バイオサイエンスセンター10周年記念シンポジウム
    • Place of Presentation
      岡崎コンファレンスセンター
    • Year and Date
      2011-02-10
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Intrinsic Disorder in Allosteric Transition of Proteins2011

    • Author(s)
      K, Itoh, M. Sasai
    • Organizer
      第11回日本蛋白質科学会
    • Place of Presentation
      大阪
    • Year and Date
      2011-06-06
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Biological networks : oscillations and transitions2011

    • Author(s)
      M.Sasai
    • Organizer
      Multiscale Characterizations of Biological Systems : From Molecules to Networks
    • Place of Presentation
      Nanjing (China)(招待講演)
    • Year and Date
      2011-06-02
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Biological networks : oscillat-ions and transitions2011

    • Author(s)
      M. Sasai
    • Organizer
      International Workshop on "Multiscale Characteriz-ations of Biological Systems : From Molecules to Networks"
    • Place of Presentation
      Nanjing Dongjiao State Guesthouse, China
    • Year and Date
      2011-06-02
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Anomalous Dynamics of Eukaryotic Cell Locomotion2010

    • Author(s)
      M. Sasai
    • Organizer
      Dynamic Days Asia Pacific 6
    • Place of Presentation
      University of New South Wales, Sydney, Australia
    • Year and Date
      2010-07-13
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Molecular Mechanism of A Protein-Based Circadian Clock2010

    • Author(s)
      M. Sasai
    • Organizer
      Fifty Years of Biophysics Research at Nagoya University
    • Place of Presentation
      Nagoya University
    • Year and Date
      2010-03-13
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Anomalous Dynamics of Eukaryotic Cell Locomotion2010

    • Author(s)
      M.Sasai
    • Organizer
      Dynamic Days Asia Pacific 6
    • Place of Presentation
      New South Wales大学,シドニー,オーストラリア
    • Year and Date
      2010-07-13
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Synchronization and Noise in a Protein-Based Circadian Oscillator2010

    • Author(s)
      M. Sasai
    • Organizer
      Biological Networks-Principles and Dynamics
    • Place of Presentation
      Kavli Institute for Theoretical Physics China, Beijing, China
    • Year and Date
      2010-07-29
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Statistical mechanics of protein allostery : roles of back-bone and side-chain fluctuations2010

    • Author(s)
      M. Sasai
    • Organizer
      10th KIAS Conference on Protein Structure and Function
    • Place of Presentation
      Korea Institute for Advanced Study, Seoul, Korea
    • Year and Date
      2010-10-01
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Molecular Mechanism of A Protein-Based Circadian Clock2010

    • Author(s)
      M. Sasai
    • Organizer
      Fifty Years of Biophysics Research at Nagoya University
    • Place of Presentation
      Nagoya University
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Synchronization and Noise in a Protein-Based Circadian Oscillator, Biological Networks. Principles and Dynamics2010

    • Author(s)
      M. Sasai
    • Organizer
      Kavli Institute for Theoretical Physics China
    • Place of Presentation
      Beijing, China
    • Year and Date
      2010-07-27
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Stochastic gene expression in the early Drosophila embryo2010

    • Author(s)
      M.Sasai
    • Organizer
      Characterizing Landscapes :From Biomolecules to Cellular Networks
    • Place of Presentation
      Telluride市,コロラド州アメリカ
    • Year and Date
      2010-06-17
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Harnessing the thermal noise with molecular machines2010

    • Author(s)
      M.Sasai
    • Organizer
      International Symposium on Molecular Theory for Real Systems
    • Place of Presentation
      Fukui Institute(京都市)
    • Year and Date
      2010-01-08
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Entropic mechanism of large fluctuation in allosteric transition2010

    • Author(s)
      K. Itoh, M. Sasai
    • Organizer
      Gordon Research Conference on Protein Folding Dynamics
    • Place of Presentation
      Ventura, California
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Anomalous Dynamics of Eukaryotic Cell Locomotion, Emergent behaviour of biomolecular ensembles and networks2010

    • Author(s)
      M. Sasai
    • Organizer
      Kavli Institute for Theoretical Physics China
    • Place of Presentation
      Beijing, China
    • Year and Date
      2010-08-04
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Harnessing the thermal noise with molecular machines, International Symposium on Molecular Theory for Real Systems2010

    • Author(s)
      M. Sasai
    • Organizer
      Fukui Institute
    • Place of Presentation
      Kyoto
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Entropic mechanism of large fluctuation in allosteric transition2010

    • Author(s)
      K.Itoh, M.Sasai
    • Organizer
      Gordon Research Conference on Protein Folding Dynamics
    • Place of Presentation
      Ventura, California
    • Year and Date
      2010-01-10
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Statistical mechanics of protein allostery : roles of back-bone and side-chain fluctuations2010

    • Author(s)
      M.Sasai
    • Organizer
      The 10th KIAS Conference on Protein Structure and Function
    • Place of Presentation
      Korea Institute for Advanced Study,ソウルレ,韓国
    • Year and Date
      2010-10-01
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Statistical mechanics of protein allostery : roles of back-bone and side-chain fluctuations2010

    • Author(s)
      K. Itoh and M. Sasai
    • Organizer
      The 10th KIAS Conference on Protein Structure and Function, Korea Institute for Advanced Study
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2010-10-01
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Harnessing the thermal noise with molecular machines2009

    • Author(s)
      M. Sasai
    • Organizer
      The 9th KIAS-SNU Conference on Protein Structure and Function
    • Place of Presentation
      Seoul National University, Seoul, Korea
    • Year and Date
      2009-10-09
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor, Single molecule experiments and theories2009

    • Author(s)
      M. Sasai
    • Organizer
      International Workshop on Single Molecule Dynamics and Spectroscopy
    • Place of Presentation
      Chung-Ang University Seoul, Korea
    • Year and Date
      2009-10-07
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Energy landscape theory of protein allostery2009

    • Author(s)
      Masaki Sasai
    • Organizer
      First Korea-Japan Seminars on Biomole cular Sciences
    • Place of Presentation
      Korea Institute for Advanced study, Seoul
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Harnessing the thermal noise with molecular machines2009

    • Author(s)
      M. Sasai
    • Organizer
      The 9th KIAS-SNU Conference on Protein Structure and Function
    • Place of Presentation
      Seoul National University, Seoul, Korea
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] A coarse-grained MD approach for de novo prediction of protein structure2009

    • Author(s)
      M. Sasai
    • Organizer
      Asian Workshop for Protein Structure Prediction Methodology
    • Place of Presentation
      Korea Institute for Advanced Study, Seoul, Korea
    • Year and Date
      2009-09-19
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Energy landscape theory of protein allostery2009

    • Author(s)
      M. Sasai
    • Organizer
      Korea-Japan seminars on biomolecular sciences - Experiments and simulations
    • Place of Presentation
      Seoul, Korea
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Harnessing the thermal noise with molecular machines2009

    • Author(s)
      M.Sasai
    • Organizer
      The 9th KIAS-SNU Conference on Protein Structure and Function
    • Place of Presentation
      Seoul National Universi(ソウル)
    • Year and Date
      2009-10-09
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor2009

    • Author(s)
      M.Sasai
    • Organizer
      International Workshop on Single Molecule Dynamics and Spectroscopy
    • Place of Presentation
      Chung-Ang University(ソウル)
    • Year and Date
      2009-10-07
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Stochastic gene expression in developing embryos2009

    • Author(s)
      M. Sasai
    • Organizer
      International Symposium on Reaction Dynamics of Many-body Chemical Systems
    • Place of Presentation
      Kyoto
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Harnessing the thermal noise with molecular machines2009

    • Author(s)
      M.Sasai
    • Organizer
      The 9th KIAS-SNU Conference on Protein Structure and Function
    • Place of Presentation
      Seoul National University (ソウル)
    • Year and Date
      2009-10-09
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Monte Carlo simulation of transcriptional control in 6 kbp DNA2009

    • Author(s)
      Naoko Tokuda, Masaki Sasai and George Chikenii
    • Organizer
      The 53 rd Annual Meeting of Biophysical Society
    • Place of Presentation
      Boston
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] A coarse-grained MD approach for de novo prediction of protein structure2009

    • Author(s)
      M.Sasai
    • Organizer
      Asian Workshop for Protein Structure Prediction Methodology
    • Place of Presentation
      Korea Institute for Advanced Study (ソウル)
    • Year and Date
      2009-09-19
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Energy landscape theory of protein allostery2009

    • Author(s)
      M. Sasai
    • Organizer
      Korea-Japan seminars on biomolecular sciences-Experiments and simulations
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2009-02-27
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Unidirectional Brownian motion observed in an in silica single molecule experiment of an actomyosin motor, Single molecule experiments and theories2009

    • Author(s)
      M. Sasai
    • Organizer
      International Workshop on Single Molecule Dynamics and Spectroscopy
    • Place of Presentation
      Chung-Ang University, Seoul, Korea
    • Year and Date
      2009-10-07
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] 熱揺らぎのなかで働く分子マシンとしての蛋白質2009

    • Author(s)
      笹井理生
    • Organizer
      第23回分子シミュレーション討論会
    • Place of Presentation
      名古屋市吹上ホール
    • Year and Date
      2009-11-30
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Energy landscape theory of protein allostery2009

    • Author(s)
      M.Sasai
    • Organizer
      Korea-Japan seminars on biomolecular sciences - Experiments and simulations
    • Place of Presentation
      Seoul,Korea
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Stochastic gene expression in developing embryos2009

    • Author(s)
      M. Sasai
    • Organizer
      International Symposium on Reaction Dynamics of Many-body Chemical Systems
    • Place of Presentation
      Kyoto
    • Year and Date
      2009-06-22
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Energy landscape theory of protein allostery2009

    • Author(s)
      Masaki Sasai
    • Organizer
      First Korea-Japan. Seminars on Biomolecular Sciences
    • Place of Presentation
      First Korea-Japan. Seminars on Biomolecular Sciences
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor, Single molecule experiments and theories2009

    • Author(s)
      M. Sasai
    • Organizer
      International Workshop on Single Molecule Dynamics and Spectroscopy
    • Place of Presentation
      Chung-Ang University Seoul, Korea
    • Year and Date
      2009-10-07
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Modeling of Transcriptional Interaction in Gene Regulation2008

    • Author(s)
      N. Tokuda, M. Sasai, and G. Chikenji
    • Organizer
      The 5th Open Workshop for"Chemistry of Biological Processes Created by Water and Biomolecules"Folding Dynamics
    • Place of Presentation
      奈良
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] Noise and coherent dynamics in biomolecular networks, Noise in complex systems : From molecular dynamics to stochastic modeling2008

    • Author(s)
      M. Sasai
    • Organizer
      WORKSHOP 2008, in KAIST Daejeon
    • Place of Presentation
      Korea
    • Year and Date
      2008-10-07
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Cooperativity, connectivity, and folding pathways of multidomain proteins2008

    • Author(s)
      K. Itoh and M. Sasai
    • Organizer
      Cordon Research Conference on Protein Folding Dynamics
    • Place of Presentation
      Ventura, California
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] タンパク質のダイナミックな構造と機能に果たす水の役割2008

    • Author(s)
      笹井理生
    • Organizer
      日本生物物理学会年会
    • Place of Presentation
      福岡国際会議場
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] シミュレーションによる構造変化の研究2008

    • Author(s)
      笹井理生
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Place of Presentation
      大阪大学
    • Year and Date
      2008-03-03
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] 蛋白質の多様なフォールディング形態に対する多次元ランドスケープ理論2008

    • Author(s)
      伊藤一仁, 笹井理生
    • Organizer
      日本生物物理学会年会
    • Place of Presentation
      福岡国際会議場
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Precise spatial patterns of Bicoid and Hunchback in the early Drosophila embryo2008

    • Author(s)
      Yurie Okabe, Hiroki Murakami, Masaki Sasai
    • Organizer
      Frontiers in Developmental Biology(フランス発生生物学会/日本発生生物学会合同年会)
    • Place of Presentation
      Giens, France
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] 真核生物の転写制御におけるDNAの物性研究2008

    • Author(s)
      徳田 直子, 笹井 理生, 千見寺 浄慈
    • Organizer
      日本物理学会第63回年会
    • Place of Presentation
      近畿大学
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] Consistency among local and global structures in protein folding and structure prediction2008

    • Author(s)
      M. Sasai
    • Organizer
      The 8th KIAS - Yonsei Conference on Protein Structure and Function
    • Place of Presentation
      Yonsei University, Seoul, Korea
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Monte Carlo Simulation of Transcriptional Regulation in Linear DNA of Eukaryotes2008

    • Author(s)
      Naoko Tokuda, Masaki Sasai, George Chikenji
    • Organizer
      Joint Meeting of the Biophysical Society 52nd Annual Meeting & 16th International Biophysics Congress
    • Place of Presentation
      Long Beach, California
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Consistency among local and global structures in protein folding and structure prediction2008

    • Author(s)
      M. Sasai
    • Organizer
      The 8th KIAS-Yonsei Conference on Protein Structure and Function
    • Place of Presentation
      Yonsei University, Seoul
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Consistency among local and global structures in protein folding and structure prediction2008

    • Author(s)
      M. Sasai
    • Organizer
      The 8th KIAS-Yonsei Conference on Protein Structure and Function
    • Place of Presentation
      Yonsei University, Seoul, Korea
    • Year and Date
      2008-10-10
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Noise and coherent dynamics in biomolecular networks2008

    • Author(s)
      M.Sasai
    • Organizer
      Noise in complex systems : From molecular dynamics to stochastic modeling WORKSHOP 2008
    • Place of Presentation
      KAIST Daejeon, Korea
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] タンパク質のダイナミックな構造と機能に果たす水の役割2008

    • Author(s)
      笹井理生
    • Organizer
      日本生物物理学会年会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2008-12-03
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Noise and coherent dynamics in biomolecular networks2008

    • Author(s)
      M. Sasai
    • Organizer
      Noise in complex systems: From molecular dynamics to stochastic modeling WORKSHOP 2008
    • Place of Presentation
      KAIST Daejeon, Korea
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction2008

    • Author(s)
      T. N. Sasakil, H. Cetin, M. Sasai
    • Organizer
      The 8th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction
    • Place of Presentation
      Sardinia, Italy
    • Data Source
      KAKENHI-PROJECT-20244068
  • [Presentation] Consistency among local and global structures in proteinfolding and structure prediction2008

    • Author(s)
      M. Sasai
    • Organizer
      The 8 th KIAS-Yonsei Conference on Protein Structure and Function
    • Place of Presentation
      Yonsei University, Seoul
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Energy landscape perspective of protein functioning2007

    • Author(s)
      M. Sasai
    • Organizer
      The 3rd Asian Pacific Conference on Theoretical & Computational Chemistry
    • Place of Presentation
      Beijing
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] シャッフリングとアロステリック転移を用いたKaiC概日リズムのモデル化2007

    • Author(s)
      依田充正, 江口浩平, 寺田智樹, 笹井理生
    • Organizer
      第14回日本時間生物学会
    • Place of Presentation
      京王プラザホテル
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] アクチンフィラメント上のミオシン頭部のバイアス運動への疎水および静電相互作用の寄与2007

    • Author(s)
      寺田 智樹, 笹井 理生
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] 細胞運動及び細胞分裂の統一モデル2007

    • Author(s)
      西村信一郎, 笹井理生
    • Organizer
      細胞性粘菌研究会
    • Place of Presentation
      弘前大学
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Bottom ups and top downs in biological systems2007

    • Author(s)
      Masaki Sasai
    • Organizer
      The 2nd International Workshop on Natural Computing
    • Place of Presentation
      Nagoya
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] シャッフリングとアロステリック転移を用いたKaiC概日リズムのモデル化2007

    • Author(s)
      依田 充正, 江口 浩平, 寺田 智樹, 笹井 理生
    • Organizer
      第45回生物物理学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] ランジュバン動力学と構造-配列評価の併用によるタンパク質立体構造予測2007

    • Author(s)
      Cetin Hikmet, 佐々木 尚, 笹井 理生
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] Energy landscape perspective of protein functioning2007

    • Author(s)
      Masaki Sasai
    • Organizer
      The 3rd Asian Pacific Conference on Theoretical & Computational Chemistry
    • Place of Presentation
      北京,中華人民共和国
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Effects of the DNA state fluctuation on single-cell dynamics of self-regulating gene2007

    • Author(s)
      Yurie Okabe, Yuu Yagi, and Masaki Sasai
    • Organizer
      The 8th International Conference on Systems Biology
    • Place of Presentation
      Long Beach, California
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] 蛋白質の構造変化ダイナミクス-1分子統計力学の視点からの考察2007

    • Author(s)
      伊藤一仁, 笹井理生
    • Organizer
      第45回生物物理学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] 細胞運動及び細胞分裂の統一モデル2007

    • Author(s)
      西村 信一郎, 笹井 理生
    • Organizer
      第45回生物物理学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] ショウジョウバエ胚においてBicoidの確率的拡散と協同的結合がhunchbackの発現に及ぼす影響2007

    • Author(s)
      岡部ゆりえ, 村上博紀, 笹井理生
    • Organizer
      第45回生物物理学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] A unified mechanism of amoeboid cel locomotion and cell fission2007

    • Author(s)
      Shin I. Nishimura and Masaki Sasai
    • Organizer
      The Joint Annual Meetings of the Society for Mathematical Biology and the Japanese Society for Mathematical Biology
    • Place of Presentation
      San Jose, California
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Coarse-Grained Langevin Molecular Dynamics Approach to De Novo Protein Structure Prediction2007

    • Author(s)
      Takeshi N. Sasaki andMasaki Sasai
    • Organizer
      The 18th International Conference on Genome Informatics
    • Place of Presentation
      Singapore
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] A chameleon Go model study of the allosteric communication in adenylate kinase2007

    • Author(s)
      山下 貴弘, 笹井 理生, 寺田 智樹
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] Energy- Landscape Perspective of Protein Function and Structure Formation2007

    • Author(s)
      Masaki Sasai
    • Organizer
      Workshop on Computational Biophysics
    • Place of Presentation
      Nagoya
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] デノボ構造予測に向けた粗視化ランジュバン動力学法2007

    • Author(s)
      佐々木 尚, 笹井 理生
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-18031017
  • [Presentation] 拡張された郷-likeモデルによるモータータンパク質の構造変化2007

    • Author(s)
      検崎博生, 笹井理生
    • Organizer
      第45回生物物理学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] ショウジョウバエ初期胚においてBicoidの確率的拡散と協同的結合がhunchbackの発現に及ぼす影響2007

    • Author(s)
      村上 博紀, 岡部ゆりえ, 笹井理生
    • Organizer
      第45回生物物理学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-18066005
  • [Presentation] Epigenetic dynamics of gene regulation

    • Author(s)
      Masaki Sasai
    • Organizer
      Architecture, dynamics, and functionality of molecular biosystems
    • Place of Presentation
      Okazaki
    • Year and Date
      2015-03-30 – 2015-03-31
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] タンパク質物性から振動の理論生物学へ

    • Author(s)
      笹井理生
    • Organizer
      新学術領域「動的秩序と機能」領域班会議
    • Place of Presentation
      石川県
    • Year and Date
      2014-08-04 – 2014-08-07
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] KaiCタンパク質のリン酸化リズムとATP加水分解のカップリングの確率シミュレーション

    • Author(s)
      寺田智樹,成田建樹,笹井理生
    • Organizer
      日本物理学会第70回年次大会
    • Place of Presentation
      早稲田大学
    • Year and Date
      2015-03-21 – 2015-03-24
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] Fluctuating genome structure and gene regulation

    • Author(s)
      Masaki Sasai, Naoko Tokuda, Shin Fujishiro
    • Organizer
      8th IUPAP International Conference on Biological Physics
    • Place of Presentation
      Beijing
    • Year and Date
      2014-06-18 – 2014-06-22
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] Computational chromosome conformation sampling of human diploid genome

    • Author(s)
      Shin Fujishiro, Naoko Tokuda, Masaki Sasai
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-25 – 2014-09-27
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Dynamical energy landscape view of actomyosin motors

    • Author(s)
      Masaki Sasai, Qing-Miao Nie, and Tomoki P. Terada
    • Organizer
      The 7th Korea-Japan Seminars on Biomolecular Sciences
    • Place of Presentation
      Seoul
    • Year and Date
      2014-11-26 – 2014-11-28
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] ゲノム立体構造の動力学シミュレーション

    • Author(s)
      笹井理生、徳田直子、藤城新
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Invited
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Are there transcriptionally inactive regions localized in a budding yeast nucleus?

    • Author(s)
      Naoko Tokuda, Shin Fujishiro, Masaki Sasai
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-25 – 2014-09-27
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Fluctuating genome structure and gene regulation

    • Author(s)
      Masaki Sasai, Naoko Tokuda, Shin Fujishiro
    • Organizer
      8th IUPAP International Conference on Biological Physics
    • Place of Presentation
      Beijing
    • Year and Date
      2014-06-18 – 2014-06-22
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] A coarse grained model of chromosomes based on the Hi-C data

    • Author(s)
      Naoko Tokuda, Shin Fujishiro, Masaki Sasai
    • Organizer
      The 4D Nucleome 2014
    • Place of Presentation
      Hiroshima
    • Year and Date
      2014-12-17 – 2014-12-20
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] Fluctuating genome structure and gene regulation

    • Author(s)
      Masaki Sasai, Naoko Tokuda, Shin Fujishiro
    • Organizer
      8th IUPAP International Conference on Biological Physics
    • Place of Presentation
      Beijing
    • Year and Date
      2014-06-18 – 2014-06-22
    • Invited
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Interplay between the ATPase activity and the structural change of KaiC protein studied by stochastic simulation

    • Author(s)
      Kenju Narita, Masaki Sasai, Tomoki P. Terada
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-25 – 2014-09-27
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] A coarse grained model of chromosomes based on the Hi-C data

    • Author(s)
      Naoko Tokuda, Shin Fujishiro, Masaki Sasai
    • Organizer
      The 4D Nucleome 2014
    • Place of Presentation
      Hiroshima
    • Year and Date
      2014-12-17 – 2014-12-20
    • Data Source
      KAKENHI-PROJECT-24244068
  • [Presentation] A coarse grained model of chromosomes based on the Hi-C data

    • Author(s)
      Naoko Tokuda, Shin Fujishiro, Masaki Sasai
    • Organizer
      The 4D Nucleome 2014
    • Place of Presentation
      Hiroshima
    • Year and Date
      2014-12-17 – 2014-12-20
    • Data Source
      KAKENHI-PROJECT-26610130
  • [Presentation] Dynamical energy landscape view of actomyosin motors

    • Author(s)
      Masaki Sasai, Qing-Miao Nie, and Tomoki P. Terada
    • Organizer
      The 7th Korea-Japan Seminars on Biomolecular Sciences
    • Place of Presentation
      Seoul
    • Year and Date
      2014-11-26 – 2014-11-28
    • Invited
    • Data Source
      KAKENHI-PROJECT-23654147
  • [Presentation] From molecules to system: Multiscale modeling of reactions, structural changes, and rhythm of KaiABC system

    • Author(s)
      Kenjyu Narita, Masaki Sasai, Tomoki P. Terada
    • Organizer
      The 3rd International Symposium "Dynamical ordering of biomolecular systems for creation of integrated functions"
    • Place of Presentation
      三重県志摩市
    • Year and Date
      2015-01-10 – 2015-01-11
    • Data Source
      KAKENHI-PUBLICLY-26102520
  • [Presentation] Epigenetic dynamics of gene regulation

    • Author(s)
      Masaki Sasai
    • Organizer
      Architecture, dynamics, and functionality of molecular biosystems
    • Place of Presentation
      Okazaki
    • Year and Date
      2015-03-30 – 2015-03-31
    • Invited
    • Data Source
      KAKENHI-PROJECT-24244068
  • 1.  TERADA Tomoki (20420367)
    # of Collaborated Projects: 5 results
    # of Collaborated Products: 12 results
  • 2.  CHIKENJI George (10420366)
    # of Collaborated Projects: 4 results
    # of Collaborated Products: 2 results
  • 3.  WANG Jin
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 2 results
  • 4.  YOMO Tetsuya (00222399)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 5.  TAKANO Mitsunori (40313168)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 4 results
  • 6.  大峰 巌 (60146719)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 7.  小田垣 孝 (90214147)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 8.  金谷 利治 (20152788)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 9.  山室 修 (20200777)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 10.  松井 淳 (10274424)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 11.  深尾 浩次 (50189908)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 12.  新井 宗仁 (90302801)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 13.  ASAI Kiyoshi
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 3 results
  • 14.  前島 一博
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 3 results
  • 15.  井手 聖
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 16.  谷 知己
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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