Shionyu Masafumi 塩生真史

… Alternative Names

SHIONYU Masafumi 塩生真史

塩生真史シオニュウマサフミ

Less

Researcher Number	30345847
Other IDs
Affiliation (Current)	2025: 長浜バイオ大学, バイオサイエンス学部, 教授
Affiliation (based on the past Project Information) *help	2024 – 2025: 長浜バイオ大学, バイオサイエンス学部, 教授 2019 – 2023: 長浜バイオ大学, バイオサイエンス学部, 准教授 2015 – 2017: 長浜バイオ大学, バイオサイエンス学部, 准教授 2011 – 2012: 長浜バイオ大学, バイオサイエンス学部, 講師 2009: 長浜バイオ大学, バイオサイエンス学部, 講師 2006 – 2007: 長浜バイオ大学, バイオサイエンス学部, 講師
Review Section/Research Field	Principal Investigator Basic Section 62010:Life, health and medical informatics-related / Life / Health / Medical informatics / Biophysics Except Principal Investigator Basic Section 64010:Environmental load and risk assessment-related / Biophysics
Keywords	Principal Investigator 機械学習 / 出芽酵母 / 機能アノテーション / データベース / 機能予測 / 選択的スプライシング / オミックス解析 / 金属イオン結合アッセイ / X線結晶構造解析 / メタボローム解析 … More / 結合アッセイ / 低分子結合予測 / ピリドキサールリン酸 / 酵素 / SNV / 低分子化合物 / 機能部位予測 / 機能未知タンパク質 / 理論生物学 / 次世代シーケンサー / 立体構造予測 / プロテオミクス / 次世代シーケンサ / 立体構造予測データベース / バイオインフォマティクス … More Except Principal Investigator グラフニューラルネットワーク / 記述子 / 予測モデル構築 / Rs値 / パッシブサンプリング法 / リガンド結合部位 / RNA / バイオインフォマティクス / 理論生物学 / 蛋白質間相互作用 / モジュール / 機能部位 / RNA編集 / データベース / ホモロジーモデリング / 選択的スプライシング / タンパク質立体構造 Less

Prediction of biologically relevant metal-binding proteins using three-dimensional structural informationPrincipal Investigator
- Principal Investigator
  
  塩生真史
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Nagahama Institute of Bio-Science and Technology
Improvement of work efficiency of water environment monitoring methods using parameters estimated by multivariate analysis and machine learning
- Principal Investigator
  
  中村卓
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 64010:Environmental load and risk assessment-related
- Research Institution
  Nagahama Institute of Bio-Science and Technology
Can a combination of cofactor-binding prediction and experimental validation identify uncharacterized enzymes?Principal Investigator
- Principal Investigator
  
  塩生真史
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Nagahama Institute of Bio-Science and Technology
Development of a prediction method for cofactors binding to uncharacterized enzymes using feedback from experimental validationsPrincipal Investigator
- Principal Investigator
  
  Shionyu Masafumi
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Nagahama Institute of Bio-Science and Technology
Development of a method for predicting functional sites in function-unknown splicing isoformsPrincipal Investigator
- Principal Investigator
  
  Shionyu Masafumi
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Nagahama Institute of Bio-Science and Technology
Development of a estimation method for difference of functional sites among splicing isoformsPrincipal Investigator
- Principal Investigator
  
  SHIONYU Masafumi
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Biophysics
- Research Institution
  Nagahama Institute of Bio-Science and Technology
Studying Function of Alternative Splicing Products Based on Protein Structure Modeling
- Principal Investigator
  
  GO Mitiko
- Project Period (FY)
  2006 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  Ochanomizu University

[Journal Article] Bacterial Glycolipid Acting on Protein Transport Across Membranes2024
- Author(s)
  Mori Shoko、Shionyu Masafumi、Shimamoto Keiko、Nomura Kaoru
- Journal Title
  
  ChemBioChem
  
  Volume: - Issue: 10
- DOI
  10.1002/cbic.202300808
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K05323, KAKENHI-PROJECT-23K23480, KAKENHI-PROJECT-23K24945
[Journal Article] Acceleration of Protein Degradation by 20S Proteasome-Binding Peptides Generated by In Vitro Artificial Evolution2023
- Author(s)
  Zhu Yunhao、Shigeyoshi Kaishin、Hayakawa Yumiko、Fujiwara Sae、Kishida Masamichi、Ohki Hitoshi、Horibe Tomohisa、Shionyu Masafumi、Mizukami Tamio、Hasegawa Makoto
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 24 Issue: 24 Pages: 17486-17486
- DOI
  10.3390/ijms242417486
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K24945
[Journal Article] タンパク質-リガンド結合予測と創薬への活用2023
- Author(s)
  塩生真史, 土方敦司, 白井剛
- Journal Title
  
  PHARM STAGE
  
  Volume: 23 Pages: 38-46
- Data Source
  KAKENHI-PROJECT-23K24945
[Journal Article] Intermolecular Interactions between a Membrane Protein and a Glycolipid Essential for Membrane Protein Integration2022
- Author(s)
  Mori Shoko、Nomura Kaoru、Fujikawa Kohki、Osawa Tsukiho、Shionyu Masafumi、Yoda Takao、Shirai Tsuyoshi、Tsuda Shugo、Yoshizawa-Kumagaye Kumiko、Masuda Shun、Nishio Hideki、Yoshiya Taku、Suzuki Sonomi、Muramoto Maki、Nishiyama Ken-ichi、Shimamoto Keiko
- Journal Title
  
  ACS Chemical Biology
  
  Volume: 17 Issue: 3 Pages: 609-618
- DOI
  10.1021/acschembio.1c00882
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K12211, KAKENHI-PROJECT-19H02843, KAKENHI-PROJECT-20K05738, KAKENHI-PROJECT-21K06037, KAKENHI-PROJECT-22K19262, KAKENHI-PUBLICLY-22H05392, KAKENHI-PROJECT-23K21721, KAKENHI-PROJECT-23K23831, KAKENHI-PROJECT-23K23850
[Journal Article] Current status of structure-based drug repurposing against COVID-19 by targeting SARS-CoV-2 proteins2021
- Author(s)
  Hijikata Atsushi、Shionyu Clara、Nakae Setsu、Shionyu Masafumi、Ota Motonori、Kanaya Shigehiko、Shirai Tsuyoshi
- Journal Title
  
  Biophysics and Physicobiology
  
  Volume: 18 Issue: 0 Pages: 226-240
- DOI
  10.2142/biophysico.bppb-v18.025
- NAID
  130008106407
- ISSN
  2189-4779
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K12211, KAKENHI-PROJECT-18H03331, KAKENHI-PLANNED-20H05932, KAKENHI-PROJECT-23K21721
[Journal Article] Evaluating cepharanthine analogues as natural drugs against SARS‐CoV‐22021
- Author(s)
  Hijikata Atsushi、Shionyu‐Mitsuyama Clara、Nakae Setsu、Shionyu Masafumi、Ota Motonori、Kanaya Shigehiko、Hirokawa Takatsugu、Nakajima Shogo、Watashi Koichi、Shirai Tsuyoshi
- Journal Title
  
  FEBS Open Bio
  
  Volume: 12 Issue: 1 Pages: 285-294
- DOI
  10.1002/2211-5463.13337
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K12211, KAKENHI-PROJECT-18H03331, KAKENHI-PROJECT-21K15458, KAKENHI-PLANNED-20H05932, KAKENHI-PROJECT-23K21721
[Journal Article] Curcumin Derivatives Verify the Essentiality of ROS Upregulation in Tumor Suppression2019
- Author(s)
  Nakamae Ikuko、Morimoto Tsumoru、Shima Hiroki、Shionyu Masafumi、Fujiki Hisayo、Yoneda-Kato Noriko、Yokoyama Takashi、Kanaya Shigehiko、Kakiuchi Kiyomi、Shirai Tsuyoshi、Meiyanto Edy、Kato Jun-ya
- Journal Title
  
  Molecules
  
  Volume: 24 Issue: 22 Pages: 4067-4067
- DOI
  10.3390/molecules24224067
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K12211, KAKENHI-PROJECT-17H01818, KAKENHI-PROJECT-17K07387
[Journal Article] Structures of jacalin‐related lectin PPL3 regulating pearl shell biomineralization2018
- Author(s)
  Nakae S, Shionyu M, Ogawa T, Shirai T
- Journal Title
  
  Proteins
  
  Volume: 86 Issue: 6 Pages: 644-653
- DOI
  10.1002/prot.25491
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17H01818, KAKENHI-PROJECT-15K00411
[Journal Article] Ridaifen-F conjugated with cell-penetrating peptides inhibits intracellular proteasome activities and induces drug-resistant cell death.2018
- Author(s)
  Tanaka, M., Zhu, Y., Shionyu, M., Ota, N., Shibata, N., Watanabe, C., Mizusawa, A., Sasaki, R., Mizukami, T., Shiina, I., Hasegawa, M.
- Journal Title
  
  European Journal of Medicinal Chemistry
  
  Volume: 146 Pages: 636-650
- DOI
  10.1016/j.ejmech.2018.01.045
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K08329, KAKENHI-PROJECT-15K00411, KAKENHI-PROJECT-17H03024
[Journal Article] Decoding disease-causing mechanisms of missense mutations from supramolecular structures2017
- Author(s)
  Hijikata A, Tsuji T, Shionyu M, Shirai T
- Journal Title
  
  Scientific Reports
  
  Volume: 7 Issue: 1 Pages: 8541-8541
- DOI
  10.1038/s41598-017-08902-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H01818, KAKENHI-PROJECT-15K00411, KAKENHI-PROJECT-15K21487
[Journal Article] The role of the Prod1 membrane anchor in newt limb regeneration2017
- Author(s)
  Nomura, K., Tanimoto, Y., Hayashi, F., Harada, E., Shan, X.-Y., Shionyu, M., Hijikata, A., Shirai, T., Morigaki, K., Shimamoto, K.
- Journal Title
  
  Angew. Chem. Int. Ed.
  
  Volume: 56 Issue: 1 Pages: 270-274
- DOI
  10.1002/anie.201609703
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26291031, KAKENHI-PROJECT-15K00411, KAKENHI-PROJECT-15K14489, KAKENHI-PROJECT-15K21487, KAKENHI-PROJECT-17KT0024, KAKENHI-PROJECT-17H03666
[Journal Article] Classification of ligand molecules in PDB with graph match-based structural superposition.2016
- Author(s)
  Shionyu-Mitsuyama, C., Hijikata, A., Tsuji, T. & Shirai, T.
- Journal Title
  
  J Struct Funct Genomics.
  
  Volume: 17 Issue: 4 Pages: 135-146
- DOI
  10.1007/s10969-016-9209-x
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15K00411
[Journal Article] AS-EAST: a functional annotation tool for putative proteins encoded by alternatively spliced transcripts.2012
- Author(s)
  Masafumi Shionyu, Ken-ichi Takahashi, Mitiko Go
- Journal Title
  
  Bioinformatics
  
  Volume: 28 Issue: 15 Pages: 2076-2077
- DOI
  10.1093/bioinformatics/bts320
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23770187
[Journal Article] DINE: A Novel Score Function for Modeling Multidomain Protein Structures with Domain Linker and Interface Restraints2012
- Author(s)
  Satoru Hirako, Masafumi Shionyu
- Journal Title
  
  IPSJ Transactions on Bioinformatics
  
  Volume: 5 Issue: 0 Pages: 18-26
- DOI
  10.2197/ipsjtbio.5.18
- NAID
  130002124174
- ISSN
  1882-6679
- Language
  English
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23770187
[Journal Article] RESOPS : A database for analyzing the correspondence of RNA editing sites to protein three-dimensional structures.2009
- Author(s)
  Yura, K., Sulaiman, S., Hatta, Y., Shionyu, M., Go, M.
- Journal Title
  
  Plant and Cell Physiology 50
  
  Pages: 1865-1873
- NAID
  10027344058
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18370061
[Journal Article] RESOPS : A Database for Analyzing the Correspondence of RNA Editing Sites to Protein Three-Dimensional Structures.2009
- Author(s)
  Kei Yura, Sintawee Sulaiman, Yosuke Hatta, Masafumi Shionyu, Mitiko Go
- Journal Title
  
  Plant and Cell Physiology 50
  
  Pages: 1865-1873
- NAID
  10027344058
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18370061
[Journal Article] The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.2008
- Author(s)
  Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E.,..., Yura, K.(66th),..., Shionyu, M.(101th),..., Go, M.(107th),..., Gojobori, T.(138th)
- Journal Title
  
  Nucleic Acids Research 36
- NAID
  120004689028
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18370061
[Journal Article] The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts2008
- Author(s)
  Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E., Yura, K. (66th), Shionyu, M. (101th), Go, M. (107th), Gojobori, T. (138th)
- Journal Title
  
  Nucleic Acids Research 36
  
  Pages: 793-799
- NAID
  120004689028
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18370061
[Journal Article] Contribution of computational biology and structural genomics to understand genome and transcriptome.2007
- Author(s)
  Go, M., Yura, K., Shionyu, M.
- Journal Title
  
  Proceedings of the International Symposium on Frontiers of Computational Science 2005 (ISFCS2005), (eds.Kaneda, Y., Kawamura, H., Sasai, M.)(Springer)
  
  Pages: 75-80
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18370061
[Journal Article] Contribution of computational biology and structural genomics to understand genome and transcriptome2007
- Author(s)
  Go M., Yura K., Shionyu M.
- Journal Title
  
  Proceedings of the International Symposium on Frontiers of Computational Science 2005 (ISFCS2005), (eds. Kaneda, Y., Kawamura, H., Sasai, M.), Springer
  
  Pages: 75-80
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18370061
[Journal Article] Alternative splicing in human transcriptome : functional and structural influence on proteins.2006
- Author(s)
  Yura, K., Shionyu, M., Hagino, K., Hijikata, A., Hirashima, Y., Nakahara, T., Eguchi, T., Shinoda, K., Yamaguchi, A., Takahashi, K., Itoh, T., Imanishi, T., Gojobori, T., Go, M.
- Journal Title
  
  Gene 380
  
  Pages: 63-71
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18370061
[Journal Article] Alternative splicing in human transcriptome : functional and structural influence on proteins2006
- Author(s)
  Yura, K., Shionyu, M., Hagino, K., Hijikata, A., Hirashima, Y., Nakahara, T., Eguchi, T., Shinoda, K., Yamaguchi, A., Takahashi, K., Itoh, T., Imanishi, T., Gojobori, T., Go, M.
- Journal Title
  
  Gene 380
  
  Pages: 63-71
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18370061
[Presentation] 出芽酵母の機能未知タンパク質Fmp41とYnl011cにおけるPLP結合能の検証2023
- Author(s)
  中本桃香、塩生真史、向由起夫
- Organizer
  第40回Yeast Workshop（山口）
- Data Source
  KAKENHI-PROJECT-23K24945
[Presentation] グラフニューラルネットワークと転移学習による低分子リガンド結合部位の予測2023
- Author(s)
  塩生真史、前原大和、土方敦司
- Organizer
  第23回日本蛋白質科学会年会（名古屋）
- Data Source
  KAKENHI-PROJECT-23K24945
[Presentation] 出芽酵母における新規PLP 結合タンパク質の同定と機能解析2022
- Author(s)
  中本桃香、塩生真史、向由起夫
- Organizer
  第39回Yeast Workshop（高知）
- Data Source
  KAKENHI-PROJECT-23K24945
[Presentation] Prediction of novel PLP-binding proteins using graph neural network2022
- Author(s)
  Masafumi Shionyu, Momoka Nakamoto, Atsushi Hijikata, Takashi Nakamura, Yukio Mukai
- Organizer
  第45回日本分子生物学会年会（千葉）
- Data Source
  KAKENHI-PROJECT-23K24945
[Presentation] Prediction of novel PLP-binding proteins from budding yeast proteome2022
- Author(s)
  Masafumi Shionyu, Momoka Nakamoto, Atsushi Hijikata, Yukio Mukai
- Organizer
  第60回日本生物物理学会年会（函館）
- Data Source
  KAKENHI-PROJECT-23K24945
[Presentation] Protein-cofactor binding prediction with graph neural networks2021
- Author(s)
  Masafumi Shionyu, Atsushi Hijikata
- Organizer
  第59回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-19K12211
[Presentation] グラフニューラルネットワークを用いたタンパク質の低分子リガンド結合予測2021
- Author(s)
  塩生真史, 土方敦司
- Organizer
  第21回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-19K12211
[Presentation] Prediction of PLP-binding proteins by using machine learning-based methods2020
- Author(s)
  Masafumi Shionyu, Tomohiro Hatta, Atsushi Hijikata
- Organizer
  第58回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-19K12211
[Presentation] 結合傾向値を特徴量とした機械学習による低分子リガンド結合残基予測2019
- Author(s)
  塩生真史, 山崎まど香, 土方敦司
- Organizer
  第19回日本蛋白質科学会年会第71回日本細胞生物学会大会合同年次大会
- Data Source
  KAKENHI-PROJECT-19K12211
[Presentation] Machine learning models for predicting ligand-binding sites using residue-wise features2019
- Author(s)
  Masafumi Shionyu, Atsushi Hijikata
- Organizer
  第57回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-19K12211
[Presentation] A local structural environment descriptor towards evaluating impact of rare variants in humans on protein structures and functions.2019
- Author(s)
  Atsushi Hijikata, Masafumi Shionyu, Tsuyoshi Shirai
- Organizer
  第57回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-19K12211
[Presentation] タンパク質超分子複合体構造から読み解くミスセンス変異と疾患表現型との関係2017
- Author(s)
  土方敦司、辻敏之、塩生真史、白井剛
- Organizer
  第5回NGS現場の会
- Invited
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] Estimating functionality of expression-unconfirmed splicing isoforms at the protein level2017
- Author(s)
  塩生真史、Pramote Teerasetmanakul
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] 選択的スプライシングにより作られるタンパク質の機械学習による機能性予測2017
- Author(s)
  Pramote Teerasetmanakul、塩生真史
- Organizer
  第17回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] 超分子複合体から読み解くミスセンス変異と疾患表現型の関係2017
- Author(s)
  土方敦司、辻敏之、塩生真史、白井剛
- Organizer
  第17回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] Decoding disease-causing mechanisms of missense mutations from supramolecular structures2017
- Author(s)
  土方敦司、辻敏之、塩生真史、白井剛
- Organizer
  第6回生命医薬情報連合大会(IIBMP2017)
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] Het-PDB Navi2: タンパク質 _ 低分子複合体構造から得られる相互作用部位のデータベース2017
- Author(s)
  塩生真史、郷通子
- Organizer
  トーゴーの日2017
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] Towards predicting functional consequences of genetic variants in humans through supramolecular complex structures2017
- Author(s)
  土方敦司、辻敏之、塩生真史、白井剛
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] Het-PDB Navi2: タンパク質立体構造中に含まれる低分子化合物のデータベース2016
- Author(s)
  塩生真史
- Organizer
  第39回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜（神奈川県横浜市）
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] タンパク質の高次構造から読み解く遺伝性疾患多様性メカニズム2016
- Author(s)
  土方敦司, 辻敏之, 塩生真史, 白井剛
- Organizer
  第39回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜（神奈川県横浜市）
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] A new approach for protein-ligand binding predictions based on matching of vector-represented amino acid residues2016
- Author(s)
  Atsushi Hijikata, Masafumi Shionyu, Tsuyoshi Shirai
- Organizer
  第５回生命医薬情報学連合大会
- Place of Presentation
  東京国際交流館プラザ平成（東京都江東区）
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] ベクトル表現化したアミノ酸残基のマッチングによるタンパク質-リガンド結合予測2016
- Author(s)
  Atsushi Hijikata, Masafumi Shionyu, Tsuyoshi Shirai
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場（茨城県つくば市）
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] 機械学習に基づく機能未知スプライシングアイソフォームの機能性推定2016
- Author(s)
  Pramote Teerasetmanakul, 塩生真史
- Organizer
  第39回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜（神奈川県横浜市）
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] Evaluation of functionality of uncharacterized splicing isoforms using machine learning techniques2016
- Author(s)
  Pramote Teerasetmanakul, Masafumi Shionyu
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場（茨城県つくば市）
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] アミノ酸残基相互作用ベクトルマッチに基づくタンパク質―低分子ドッキング法2016
- Author(s)
  土方敦司, 塩生真史, 白井剛
- Organizer
  第16回日本蛋白質科学会年会
- Place of Presentation
  福岡国際会議場（福岡市博多区）
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] Function prediction of uncharacterized splicing isoforms2015
- Author(s)
  Masafumi Shionyu
- Organizer
  第53回日本生物物理学会年会
- Place of Presentation
  金沢大学角間キャンパス（石川県・金沢市）
- Year and Date
  2015-09-14
- Data Source
  KAKENHI-PROJECT-15K00411
[Presentation] Conservation and expression analyses of splicing isoforms lacking part of the hydrophobic core2012
- Author(s)
  Shiori Ikeda, Ken-ichi Takahashi, Masafumi Shionyu
- Organizer
  第35回日本分子生物学会年会
- Place of Presentation
  福岡
- Year and Date
  2012-12-14
- Data Source
  KAKENHI-PROJECT-23770187
[Presentation] Development of a functional and structural annotation tool of novel protein isoforms produced by alternative splicing2012
- Author(s)
  Masafumi Shionyu, Ken-ichi Takahashi, Mitiko Go
- Organizer
  日本生物物理学会第50回年会
- Place of Presentation
  愛知
- Year and Date
  2012-09-23
- Data Source
  KAKENHI-PROJECT-23770187
[Presentation] AS-EAST: a web tool for functional annotation of protein isoforms produced by alternative splicing2011
- Author(s)
  Masafumi Shionyu, Ken-ichi Takahashi, Mitiko Go
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  神奈川
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-23770187
[Presentation] Comprehensive analysis of the effects of alternative splicing on protein structures2011
- Author(s)
  Shiori Ikeda, Ken-ichi Takahashi, Masafumi Shionyu
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-23770187
[Presentation] タンパク質立体構造の疎水性コアに対する選択的スプライシングの影響2011
- Author(s)
  池田志織, 高橋健一, 塩生真史
- Organizer
  第11回日本蛋白質科学会年会
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-23770187
[Presentation] Comprehensive analysis of the effects of alternative splicing on protein structures2011
- Author(s)
  Shiori Ikeda, Ken-ichi Takahashi, Masafumi Shionyu
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  神奈川
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-23770187
[Presentation] AS-EAST: a web tool for functional annotation of protein isoforms produced by alternative splicing2011
- Author(s)
  Masafumi Shionyu, Ken-ichi Takahashi, Mitiko Go
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-23770187
[Presentation] AS-ALPS : a database for inferring effects of alternative splicing based on the protein 3D structure2010
- Author(s)
  Shionyu, M., Takahashi, K., Go, M.
- Organizer
  Asian Young Researchers Conference on Computational and Omics Biology 2010
- Place of Presentation
  National Cheng Kung University (Taiwan)
- Year and Date
  2010-03-10
- Data Source
  KAKENHI-PROJECT-18370061
[Presentation] AS-ALPS : a database for inferring effects of alternative splicing based on the protein 3D structure2010
- Author(s)
  Masafumi Shionyu, Ken-ichi Takahashi, Mitiko Go
- Organizer
  Asian Young Researchers Conference on Computational and Omics Biology 2010
- Place of Presentation
  National Cheng Kung University(Taiwan)
- Year and Date
  2010-03-10
- Data Source
  KAKENHI-PROJECT-18370061
[Presentation] A web service for functional annotations of protein isoforms produced by alternative splicing2009
- Author(s)
  Shionyu, M., Takahashi, K., Go, M.
- Organizer
  第32回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(横浜市)
- Year and Date
  2009-12-11
- Data Source
  KAKENHI-PROJECT-18370061
[Presentation] RESOPS : A database of RNA editing sites in plant organelle mapped onto protein three-dimensional structures2009
- Author(s)
  Yura, K., Sulaiman, S., Hatta, Y., Shionyu, M., Go, M.
- Organizer
  第32回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(横浜市)
- Year and Date
  2009-12-10
- Data Source
  KAKENHI-PROJECT-18370061
[Presentation] 選択的スプライシングがもたらすタンパク質構造への影響2007
- Author(s)
  郷通子、由良敬、高橋健一、塩生真史
- Organizer
  シンポジウム「構造プロテオミクスを支援するバイオインフォマティクス」、生物物理学会年会
- Place of Presentation
  横浜パシフィコ(横浜)
- Year and Date
  2007-12-22
- Data Source
  KAKENHI-PROJECT-18370061
[Presentation] 真核生物の遺伝子構造とタンパク質立体構造・機能の関係2007
- Author(s)
  由良敬、塩生真史、郷通子
- Organizer
  日本進化学会第9回京都大会シンポジウム
- Place of Presentation
  京都大学
- Year and Date
  2007-09-02
- Data Source
  KAKENHI-PROJECT-18370061
[Presentation] 真核生物の遺伝子構造とタンパク質立体構造・機能の関係2007
- Author(s)
  由良敬, 塩生真史, 郷通子
- Organizer
  日本進化学会第9回京都大会シンポジウム
- Place of Presentation
  京都大学(京都市)
- Year and Date
  2007-09-02
- Data Source
  KAKENHI-PROJECT-18370061
[Presentation] A possible effect of alternative splicing on multiple regions of a single protein2006
- Author(s)
  Shionyu, M., Yura, K., Go, M.
- Organizer
  5th EABS & 44th Annual Meeting of Biophysical Society of Japan
- Place of Presentation
  沖縄コンベンションセンター(宜野湾市)
- Data Source
  KAKENHI-PROJECT-18370061
[Presentation] Systematic detection of protein regions affected by alternative splicing2006
- Author(s)
  Shionyu, M., Yura, K., Hijikata, A., Nakahara, T., Shinoda, K., Yamaguchi, A., Takahashi, K., Go, M.
- Organizer
  20th International Congress of Biochemistry and Molecular Biology
- Place of Presentation
  国立京都国際会館(京都市)
- Year and Date
  2006-06-22
- Data Source
  KAKENHI-PROJECT-18370061

1. 向由起夫 (60252615)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
2. 中村卓 (80344050)

# of Collaborated Projects: 3 results

# of Collaborated Products: 1 results
3. YURA Kei (50252226)

# of Collaborated Projects: 2 results

# of Collaborated Products: 14 results
4. 土方敦司 (80415273)

# of Collaborated Projects: 2 results

# of Collaborated Products: 16 results
5. GO Mitiko (70037290)

# of Collaborated Projects: 1 results

# of Collaborated Products: 17 results
6. 須戸幹 (50206570)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. NAKATA Keisuke

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. TEERASETMANAKUL Pramote

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
9. HASEGAWA Makoto

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
10. MIURA Kaoru

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
11. 向由紀夫

# of Collaborated Projects: 0 results

# of Collaborated Products: 4 results
12. 白井剛

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
13. 森垣憲一

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
14. 林文夫

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Shionyu Masafumi 塩生 真史

SHIONYU Masafumi 塩生 真史

塩生 真史 シオニュウ マサフミ

Research Projects

Research Products

Co-Researchers

Prediction of biologically relevant metal-binding proteins using three-dimensional structural informationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Improvement of work efficiency of water environment monitoring methods using parameters estimated by multivariate analysis and machine learning

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Can a combination of cofactor-binding prediction and experimental validation identify uncharacterized enzymes?Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of a prediction method for cofactors binding to uncharacterized enzymes using feedback from experimental validationsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of a method for predicting functional sites in function-unknown splicing isoformsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of a estimation method for difference of functional sites among splicing isoformsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Studying Function of Alternative Splicing Products Based on Protein Structure Modeling

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Bacterial Glycolipid Acting on Protein Transport Across Membranes2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Acceleration of Protein Degradation by 20S Proteasome-Binding Peptides Generated by In Vitro Artificial Evolution2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] タンパク質-リガンド結合予測と創薬への活用2023

Author(s)

Journal Title

Data Source

[Journal Article] Intermolecular Interactions between a Membrane Protein and a Glycolipid Essential for Membrane Protein Integration2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Current status of structure-based drug repurposing against COVID-19 by targeting SARS-CoV-2 proteins2021

Author(s)

Journal Title

DOI

NAID

ISSN

Language

Data Source

[Journal Article] Evaluating cepharanthine analogues as natural drugs against SARS‐CoV‐22021

Author(s)

Journal Title

DOI

Data Source

Shionyu Masafumi 塩生真史

SHIONYU Masafumi 塩生真史

塩生真史シオニュウマサフミ