ISHIZUKA Ryosuke 石塚良介

… Alternative Names

石塚良介イシヅカリョウスケ

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Researcher Number	30462196
Other IDs	https://orcid.org/0000-0003-2751-0660
Affiliation (Current)	2024: 大阪大学, 大学院工学研究科, 招へい研究員
Affiliation (based on the past Project Information) *help	2015 – 2018: 大阪大学, 基礎工学研究科, 助教
Review Section/Research Field	Principal Investigator Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-related Except Principal Investigator Life / Health / Medical informatics / Biological physics/Chemical physics/Soft matter physics
Keywords	Principal Investigator 分子動力学法 / イオン伝導度 / ナトリウムイオン液体 / MD/DFT自己無撞着法 / 古典分子動力学 / オーダーN法 / 密度汎関数理論 / 第一原理分子動力学 Except Principal Investigator 自由エネルギー / 分子シミュレーション … More / 排除体積効果 / コンピュータシミュレーション / 尿素 / 共溶媒効果 / タンパク質構造 / コンピュータシミュレーション / 排除体積項 / 分散引力 / 静電相互作用 / 構造エネルギー / ゆらぎ / 水 / 分子間相互作用 / 分布関数理論 / 変性 / 構造ゆらぎ / 共溶媒 / 溶媒和 / 年度 / イオン対 / 緩和弾性率 / 粘度 / Green-Kubo式 / 電気伝導度 / 空間分割 / 時間相関関数 / 輸送係数 Less

MDとDFTの融合手法による電池電解液への応用に向けたナトリウムイオン液体の探索Principal Investigator
- Principal Investigator
  
  石塚良介
- Project Period (FY)
  2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-related
- Research Institution
  Osaka University
Spatial-Decomposition Analysis of Transport Coefficients
- Principal Investigator
  
  Matubayasi Nobuyuki
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Biological physics/Chemical physics/Soft matter physics
- Research Institution
  Osaka University
All-Atom Analysis of Cosolvent Effect on Protein Structure through Free-Energy Calculation
- Principal Investigator
  
  Matubayasi Nobuyuki
- Project Period (FY)
  2014 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Osaka University

All 2019 2018 2017 2016 2015 2014

All Journal Article Presentation

[Journal Article] Effective charges of ionic liquid determined self-consistently through combination of molecular dynamics simulation and density-functional theory2017
- Author(s)
  Ishizuka Ryosuke、Matubayasi Nobuyuki
- Journal Title
  
  J. Comput. Chem.
  
  Volume: 38 Issue: 30 Pages: 2559-2569
- DOI
  10.1002/jcc.24880
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15K13550, KAKENHI-PROJECT-26240045
[Journal Article] Energetic Analysis of Adsorption and Absorption of Small Molecule to Nanodroplet of Water2017
- Author(s)
  Sayou Minoru、Ishizuka Ryosuke、Matubayasi Nobuyuki
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 121 Issue: 24 Pages: 5995-6001
- DOI
  10.1021/acs.jpcb.7b01554
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15K13550, KAKENHI-PROJECT-26240045
[Journal Article] Drastic Compensation of the Electronic and Solvation Effects on the ATP Hydrolysis Revealed through a Large-Scale QM/MM Simulations Combined with a Theory of Solutions2017
- Author(s)
  Hideaki Takahashi, Satoru Umino, Yuuji Miki, Ryosuke Ishizuka, Akihiro Morita, Makoto Suzuki, and Nobuyuki Matubayasi
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 121 Issue: 10 Pages: 2279-2287
- DOI
  10.1021/acs.jpcb.7b00637
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-25104003, KAKENHI-PROJECT-26240045, KAKENHI-PROJECT-26288003, KAKENHI-PROJECT-16K13860, KAKENHI-PROJECT-15K13550, KAKENHI-PROJECT-17K05138
[Journal Article] Computing Conformational Free Energy Differences in Explicit Solvent: An Efficient Thermodynamic Cycle Using an Auxiliary Potential and a Free Energy Functional Constructed from the End Points2017
- Author(s)
  Robert C. Harris, Nanjie Deng, Ronald M. Levy, Ryosuke Ishizuka, Nobuyuki Matubayasi
- Journal Title
  
  J. Comput. Chem.
  
  Volume: 38 Issue: 15 Pages: 1198-1208
- DOI
  10.1002/jcc.24668
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26240045, KAKENHI-PROJECT-15K13550
[Journal Article] Energetics of nonpolar and polar compounds in cationic, anionic, and nonionic micelles studied by all-atom molecular dynamics simulation combined with a theory of solutions2016
- Author(s)
  Atsushi Date, Ryosuke Ishizuka, Nobuyuki Matubayasi
- Journal Title
  
  Phys. Chem. Chem. Phys.
  
  Volume: 18 Issue: 19 Pages: 13223-13231
- DOI
  10.1039/c6cp01834c
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26240045, KAKENHI-PROJECT-15K13550
[Journal Article] Interaction-component analysis of the hydration and urea effects on cytochrome c2016
- Author(s)
  Y. Yamamori, R. Ishizuka, Y. Karino, S. Sakuraba, and N. Matubayasi
- Journal Title
  
  J. Chem. Phys.
  
  Volume: 144 Issue: 8 Pages: 085102-15
- DOI
  10.1063/1.4941945
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-15K13550, KAKENHI-PROJECT-26240045
[Journal Article] Correlation analysis for heat denaturation of Trp-cage miniprotein with explicit solvent2016
- Author(s)
  F. Kamo, R. Ishizuka, and N. Matubayasi
- Journal Title
  
  Protein Sci.
  
  Volume: 25 Issue: 1 Pages: 56-66
- DOI
  10.1002/pro.2754
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-15K13550, KAKENHI-PROJECT-26240045
[Journal Article] Self-Consistent Determination of Atomic Charges of Ionic Liquid through a Combination of Molecular Dynamics Simulation and Density Functional Theory2016
- Author(s)
  R. Ishizuka and N. Matubayasi
- Journal Title
  
  J. Chem. Theory Comput.
  
  Volume: 12 Issue: 2 Pages: 804-811
- DOI
  10.1021/acs.jctc.5b00885
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-15K13550, KAKENHI-PROJECT-26240045
[Journal Article] Effect of diffuseness of micelle boundary on the solute distribution upon solubilization2015
- Author(s)
  Tomoko Mizuguchi, Ryosuke Ishizuka, Nobuyuki Matubayasi
- Journal Title
  
  Chem. Phys. Lett.
  
  Volume: 624 Pages: 19-23
- DOI
  10.1016/j.cplett.2015.02.001
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-23651202, KAKENHI-PROJECT-26240045
[Journal Article] Energetic Contributions from the Cation and Anion to the Stability of Carbon Dioxide Dissolved in Imidazolium-Based Ionic Liquids2015
- Author(s)
  Ryosuke Ishizuka, Nobuyuki Matubayasi, Kai-Min Tu, Yasuhiro Umebayashi
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 119 Issue: 4 Pages: 1579-1587
- DOI
  10.1021/jp5101957
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-23651202, KAKENHI-PROJECT-26240045
[Journal Article] Spatial-decomposition analysis of electrical conductivity in ionic liquid2014
- Author(s)
  Kai-Min Tu , Ryosuke Ishizuka, Nobuyuki Matubayasi
- Journal Title
  
  J. Chem. Phys.
  
  Volume: 141 Issue: 24 Pages: 244507-244507
- DOI
  10.1063/1.4904382
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-23651202, KAKENHI-PROJECT-26240045
[Journal Article] Spatial-decomposition analysis of electrical conductivity in concentrated electrolyte solution2014
- Author(s)
  Kai-Min Tu , Ryosuke Ishizuka, Nobuyuki Matubayasi
- Journal Title
  
  J. Chem. Phys.
  
  Volume: 141 Issue: 4 Pages: 044126-044126
- DOI
  10.1063/1.4890741
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-23651202, KAKENHI-PROJECT-26240045
[Presentation] 第一原理DFT計算を用いて構築したイオン液体の非分極力場：開発と輸送物性への応用2019
- Author(s)
  石井良樹、石塚良介、松林伸幸
- Organizer
  日本化学会第99春季年会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] イオン液体の輸送特性解析に最適化した分子動力学モデルの開発2019
- Author(s)
  石井良樹、石塚良介、松林伸幸
- Organizer
  化学工学会第84年会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] 多元溶液系における輸送ダイナミクスの全原子解析2018
- Author(s)
  石塚良介、松林伸幸
- Organizer
  ESICB電池・電子論合同検討会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] イミダゾリウム系イオン液体における輸送係数とナノ相分離の計算評価（口頭）2018
- Author(s)
  石井良樹、石塚良介、松林伸幸
- Organizer
  電気化学会第85回大会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] イミダゾリウム系イオン液体における輸送係数とナノ相分離の計算評価（口頭）2018
- Author(s)
  石井良樹、石塚良介、松林伸幸
- Organizer
  電気化学会第85回大会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 分子動力学法による長鎖イミダゾリウムイオン液体の小分子吸収能と輸送物性解析2018
- Author(s)
  石井良樹、石塚良介、松林伸幸
- Organizer
  化学工学会第50回秋季大会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] Effective charge of ionic liquid determined through MD/DFT self-consistent scheme2018
- Author(s)
  Ryosuke Ishizuka and Nobuyuki Matubayasi
- Organizer
  8th International Symposium on Molecular Thermodynamics and Molecular Simulation (MTMS '18)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] Transport properties of ionic liquids with advanced non-polarizable force fields based on first-principles calculations2018
- Author(s)
  Yoshiki Ishii, Ryosuke Ishizuka, and Nobuyuki Matubayasi
- Organizer
  Joint Conference of lEMLG/JMLG Annual Meeting 2018 and 41th Symposium on Solution Chemistry of Japan "Understanding of Molecular Liquids and Its Extension to New Fields"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] オーダーN法を用いたMD/DFT自己無撞着法による分子力場構築2018
- Author(s)
  石塚良介、尾崎泰助、松林伸幸
- Organizer
  第21回理論化学討論会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] Bl_chl 電荷解析とForce Fitting 法を用いたイオン液体の非分極力場の開発2018
- Author(s)
  石井良樹、石塚良介、松林伸幸
- Organizer
  第32回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] Interaction-component analysis of protein stability with regard to heat denaturation（ポスター）2017
- Author(s)
  Yoshihiko Tokunaga, Yu Yamamori, Ryosuke Ishizuka, and Nobuyuki Matubayasi
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] 蛋白質の天然構造と熱変性構造の安定性に関する相互作用成分解析（ポスター）2017
- Author(s)
  徳永好彦、山守優、石塚良介、松林伸幸
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] Interaction-component analysis of protein stability with regard to heat denaturation（ポスター）2017
- Author(s)
  Yoshihiko Tokunaga, Yu Yamamori, Ryosuke Ishizuka, and Nobuyuki Matubayasi
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 生体関連分子のAOT逆ミセル内への導入の自由エネルギー解析（ポスター）2017
- Author(s)
  長尾昌洋、石塚良介、松林伸幸
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] MD/DFT 自己無撞着法による機能性流体の物性解析2017
- Author(s)
  石塚良介、TU Kai-Min、松林伸幸
- Organizer
  第20回理論化学討論会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] 分子動力学を用いた固液界面における分子吸着の自由エネルギー解析（口頭）2017
- Author(s)
  中久木一平、石塚良介、松林伸幸
- Organizer
  化学工学会第49回秋季大会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 生体関連分子のAOT逆ミセルへの結合の自由エネルギー解析（ポスター）2017
- Author(s)
  長尾昌洋、石塚良介、松林伸幸
- Organizer
  第40回溶液化学シンポジウム
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] 蛋白質構造の安定性と熱変性に関する相互作用成分解析（ポスター）2017
- Author(s)
  徳永好彦、山守優、石塚良介、松林伸幸
- Organizer
  第40回溶液化学シンポジウム
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] 生体関連分子のAOT逆ミセルへの結合の自由エネルギー解析（ポスター）2017
- Author(s)
  長尾昌洋、石塚良介、松林伸幸
- Organizer
  第40回溶液化学シンポジウム
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 多元溶液系における輸送ダイナミクスの全原子解析（ポスター）2017
- Author(s)
  松林伸幸、石塚良介、TU Kai-Min
- Organizer
  ESICB電池・電子論合同検討会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] 分子動力学を用いた固液界面における分子吸着の自由エネルギー解析（口頭）2017
- Author(s)
  中久木一平、石塚良介、松林伸幸
- Organizer
  化学工学会第49回秋季大会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] 蛋白質安定性と熱変性に関する相互作用成分解析（ポスター）2017
- Author(s)
  徳永好彦、山守優、石塚良介、松林伸幸
- Organizer
  第17回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 蛋白質の天然構造と熱変性構造の安定性に関する相互作用成分解析（ポスター）2017
- Author(s)
  徳永好彦、山守優、石塚良介、松林伸幸
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 固液界面における分子吸着の分子動力学シミュレーションによる解析（ポスター）2017
- Author(s)
  中久木一平、石塚良介、松林伸幸
- Organizer
  第40回溶液化学シンポジウム
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] Bl_chl電荷解析による分極力場構築法の検討（ポスター）2017
- Author(s)
  石井良樹、石塚良介、松林伸幸
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] 生体関連分子のAOT逆ミセル内への導入の自由エネルギー解析（ポスター）2017
- Author(s)
  長尾昌洋、石塚良介、松林伸幸
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] MD/DFT 自己無撞着法による機能性流体の物性解析2017
- Author(s)
  石塚良介、TU Kai-Min、松林伸幸
- Organizer
  第20回理論化学討論会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 蛋白質構造の安定性と熱変性に関する相互作用成分解析（ポスター）2017
- Author(s)
  徳永好彦、山守優、石塚良介、松林伸幸
- Organizer
  第40回溶液化学シンポジウム
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 固液界面における分子吸着の分子動力学シミュレーションによる解析（ポスター）2017
- Author(s)
  中久木一平、石塚良介、松林伸幸
- Organizer
  第40回溶液化学シンポジウム
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] Bl_chl電荷解析による分極力場構築法の検討（ポスター）2017
- Author(s)
  石井良樹、石塚良介、松林伸幸
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 蛋白質安定性と熱変性に関する相互作用成分解析（ポスター）2017
- Author(s)
  徳永好彦、山守優、石塚良介、松林伸幸
- Organizer
  第17回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] アミノ酸のAOT逆ミセルへの取り込みの自由エネルギー解析（ポスター）2017
- Author(s)
  長尾昌洋、石塚良介、松林伸幸
- Organizer
  化学工学会第49回秋季大会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 分子動力学シミュレーションによる固液界面における分子吸着の自由エネルギー解析（ポスター）2017
- Author(s)
  中久木一平、石塚良介、松林伸幸
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] アミノ酸のAOT逆ミセルへの取り込みの自由エネルギー解析（ポスター）2017
- Author(s)
  長尾昌洋、石塚良介、松林伸幸
- Organizer
  化学工学会第49回秋季大会
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] 多元溶液系における輸送ダイナミクスの全原子解析（ポスター）2017
- Author(s)
  松林伸幸、石塚良介、TU Kai-Min
- Organizer
  ESICB電池・電子論合同検討会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 分子動力学シミュレーションによる固液界面における分子吸着の自由エネルギー解析（ポスター）2017
- Author(s)
  中久木一平、石塚良介、松林伸幸
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-26240045
[Presentation] 分子集合体に取り込まれた物質に関する自由エネルギー解析2015
- Author(s)
  水口朋子、石塚良介、松林伸幸
- Organizer
  平成27年度繊維学会秋季研究発表会
- Place of Presentation
  京都工芸繊維大学（京都市左京区松ヶ崎）
- Year and Date
  2015-10-22
- Invited
- Data Source
  KAKENHI-PROJECT-15K13550
[Presentation] 分子集合体に取り込まれた物質に関する自由エネルギー解析2015
- Author(s)
  水口朋子、石塚良介、松林伸幸
- Organizer
  平成27年度繊維学会秋季研究発表会
- Place of Presentation
  京都工芸繊維大学（京都市左京区松ヶ崎）
- Year and Date
  2015-10-22
- Invited
- Data Source
  KAKENHI-PROJECT-26240045

1. Matubayasi Nobuyuki (20281107)

# of Collaborated Projects: 2 results

# of Collaborated Products: 49 results
2. 三本木至宏 (10222027)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 森田明弘

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
4. 高橋英明

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

ISHIZUKA Ryosuke 石塚 良介

石塚 良介 イシヅカ リョウスケ

Research Projects

Research Products

Co-Researchers

MDとDFTの融合手法による電池電解液への応用に向けたナトリウムイオン液体の探索Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Spatial-Decomposition Analysis of Transport Coefficients

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

All-Atom Analysis of Cosolvent Effect on Protein Structure through Free-Energy Calculation

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Effective charges of ionic liquid determined self-consistently through combination of molecular dynamics simulation and density-functional theory2017

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[Journal Article] Energetic Analysis of Adsorption and Absorption of Small Molecule to Nanodroplet of Water2017

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[Journal Article] Drastic Compensation of the Electronic and Solvation Effects on the ATP Hydrolysis Revealed through a Large-Scale QM/MM Simulations Combined with a Theory of Solutions2017

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[Journal Article] Computing Conformational Free Energy Differences in Explicit Solvent: An Efficient Thermodynamic Cycle Using an Auxiliary Potential and a Free Energy Functional Constructed from the End Points2017

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[Journal Article] Energetics of nonpolar and polar compounds in cationic, anionic, and nonionic micelles studied by all-atom molecular dynamics simulation combined with a theory of solutions2016

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[Journal Article] Interaction-component analysis of the hydration and urea effects on cytochrome c2016

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[Journal Article] Correlation analysis for heat denaturation of Trp-cage miniprotein with explicit solvent2016

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[Journal Article] Self-Consistent Determination of Atomic Charges of Ionic Liquid through a Combination of Molecular Dynamics Simulation and Density Functional Theory2016

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[Journal Article] Effect of diffuseness of micelle boundary on the solute distribution upon solubilization2015

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[Journal Article] Energetic Contributions from the Cation and Anion to the Stability of Carbon Dioxide Dissolved in Imidazolium-Based Ionic Liquids2015

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[Journal Article] Spatial-decomposition analysis of electrical conductivity in ionic liquid2014

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[Journal Article] Spatial-decomposition analysis of electrical conductivity in concentrated electrolyte solution2014

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ISHIZUKA Ryosuke 石塚良介

石塚良介イシヅカリョウスケ