Honda Naoki 本田直樹

Researcher Number	30515581
Other IDs
Affiliation (Current)	2025: 名古屋大学, 医学系研究科, 教授
Affiliation (based on the past Project Information) *help	2021 – 2024: 広島大学, 統合生命科学研究科(理), 教授 2018 – 2020: 京都大学, 生命科学研究科, 准教授 2017: 京都大学, 生命科学研究科, 特定准教授 2016: 京都大学, 生命科学研究科, 特定研究員 2013 – 2015: 京都大学, 医学(系)研究科(研究院), 准教授
Review Section/Research Field	Principal Investigator Life / Health / Medical informatics / Basic Section 62010:Life, health and medical informatics-related / Transformative Research Areas, Section (IV) / Biological Sciences Except Principal Investigator Transformative Research Areas, Section (IV) / Medium-sized Section 44:Biology at cellular to organismal levels, and related fields
Keywords	Principal Investigator 数理モデル / 機械学習 / データ駆動生物学 / 数理モデリング / データ解析 / 報酬 / 意思決定 / 心の葛藤 / 楽観悲観 / 好奇心 … More / 自由エネルギー原理 / 葛藤 / 動物 / 制御工学 / 神経科学 / 行動学 / 人工知能 / 数里モデル / 線虫 / 意志決定 / 行動戦略 / 逆強化学習 / 細胞骨格 / 細胞移動 / 糸状仮足 / 成長円錐 / 神経極性 / 微小管 / アクチンフィラメント / 細胞骨格系 … More Except Principal Investigator 情報獲得 / 神経科学 / 新FEP理論 / AI / 好奇心 / 意思決定 / 知覚 / ベイズ推定 / 数理モデル / データ駆動的解読 / 認知 / 葛藤 / 神経回路 / David Marr / 限定合理性 / 能動的推論 / 予測符号化 / 自由エネルギー原理 / アクチン骨格 / ライブセルイメージング / 細胞骨格 / 表層アクチン / 高速原子間力顕微鏡 / 機械学習 / シグナル伝達 / 表層骨格 / 原子間力顕微鏡 / アクチン Less

Frontiers in brain and life sciences on active information gain in an uncertain environment
- Principal Investigator
  
  Osakada Fumitaka
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (B)
- Review Section
  
  Transformative Research Areas, Section (IV)
- Research Institution
  Nagoya University
Establishment of new free energy principlePrincipal Investigator
- Principal Investigator
  
  Honda Naoki
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (B)
- Review Section
  
  Transformative Research Areas, Section (IV)
- Research Institution
  Hiroshima University
Data-driven identification of governing equations for multicellular dynamicsPrincipal Investigator
- Principal Investigator
  
  本田直樹
- Project Period (FY)
  2021 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Hiroshima University
Analyses of cortical actin dynamics by live-cell imaging and machine-learning
- Principal Investigator
  
  Yoshimura Shigehiro
- Project Period (FY)
  2019 – 2020
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 44:Biology at cellular to organismal levels, and related fields
- Research Institution
  Kyoto University
脳回路構築における軸索配線原理の解読Principal Investigator
- Principal Investigator
  
  本田直樹
- Project Period (FY)
  2019 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University
Identification of neural basis of animal behavioral strategy by inverse reinforcement learningPrincipal Investigator
- Principal Investigator
  
  Honda Naoki
- Project Period (FY)
  2016 – 2019
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Kyoto University
Toward cytoskeleton-based understanding of neuronal morphogenesisPrincipal Investigator
- Principal Investigator
  
  Honda Naoki
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Kyoto University

All 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 Other

All Journal Article Presentation Book

[Book] 実験医学増刊 Vol.38 No.20「機械学習を生命科学に使う！」2020
- Author(s)
  本田直樹（分担執筆、第2章-3）
- Total Pages
  7
- Publisher
  羊土社
- Data Source
  KAKENHI-PUBLICLY-19H04776
[Book] 実験医学増刊 Vol.38 No.20「機械学習を生命科学に使う！」2020
- Author(s)
  本田直樹（分担執筆、第4章-7）
- Total Pages
  8
- Publisher
  羊土社
- Data Source
  KAKENHI-PUBLICLY-19H04776
[Book] AI導入によるバイオテクノロジーの発展2018
- Author(s)
  本田直樹（共著）
- Total Pages
  234
- Publisher
  シーエムシー出版
- ISBN
  9784781313153
- Data Source
  KAKENHI-PROJECT-16K16147
[Book] 実験医学2017年5月号2017
- Author(s)
  篠原美都, 本田直樹, 篠原隆司
- Total Pages
  141
- Publisher
  羊土社
- ISBN
  9784758101639
- Data Source
  KAKENHI-PROJECT-16K16147
[Journal Article] Intercellular exchange of Wnt ligands reduces cell population heterogeneity during embryogenesis2023
- Author(s)
  Yudai Hatakeyama, Nen Saito, Yusuke Mii, Ritsuko Takada, Takuma Shinozuka, Tatsuya Takemoto, Naoki Honda & Shinji Takada
- Journal Title
  
  Nature Communications
  
  Volume: 14 Issue: 1 Pages: 1-16
- DOI
  10.1038/s41467-023-37350-x
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-21H05793, KAKENHI-ORGANIZER-21H05167, KAKENHI-PROJECT-21H02498, KAKENHI-PUBLICLY-22H05642
[Journal Article] Multidimensional fractal scaling analysis using higher order moving average polynomials and its fast algorithm2023
- Author(s)
  Ju Hanqiu、Honda Naoki、Yoshimura Shige H.、Kaneko Miki、Shigematsu Taiki、Kiyono Ken
- Journal Title
  
  Signal Processing
  
  Volume: 208 Pages: 108997-108997
- DOI
  10.1016/j.sigpro.2023.108997
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-21H05167, KAKENHI-PROJECT-20K20659
[Journal Article] Adaptive discrimination between harmful and harmless antigens in the immune system by predictive coding2023
- Author(s)
  Yoshido Kana、Naoki Honda
- Journal Title
  
  iScience
  
  Volume: 26 Issue: 1 Pages: 105754-105754
- DOI
  10.1016/j.isci.2022.105754
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22KJ1758, KAKENHI-ORGANIZER-21H05167, KAKENHI-PLANNED-21H05170
[Journal Article] Optimal COVID-19 testing strategy on limited resources2023
- Author(s)
  Tatsuki Onishi、Naoki Honda、Igarashi Yasunobu
- Journal Title
  
  PLOS ONE
  
  Volume: 18 Issue: 2 Pages: e0281319-e0281319
- DOI
  10.1371/journal.pone.0281319
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Journal Article] 心の揺らぎ・非合理性のデータ駆動的解読2023
- Author(s)
  本田　直樹
- Journal Title
  
  メディカル・サイエンス・ダイジェスト
  
  Volume: 49, 3 Pages: 114-117
- Data Source
  KAKENHI-PLANNED-21H05170
[Journal Article] Dopamine error signal to actively cope with lack of expected reward2023
- Author(s)
  Ishino Seiya、Kamada Taisuke、Sarpong Gideon A.、Kitano Julia、Tsukasa Reo、Mukohira Hisa、Sun Fangmiao、Li Yulong、Kobayashi Kenta、Naoki Honda、Oishi Naoya、Ogawa Masaaki
- Journal Title
  
  Science Advances
  
  Volume: 9 Issue: 10 Pages: 1-19
- DOI
  10.1126/sciadv.ade5420
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K18645, KAKENHI-ORGANIZER-21H05167, KAKENHI-PROJECT-20K16474, KAKENHI-PROJECT-22KJ1765, KAKENHI-PROJECT-20H03547, KAKENHI-PROJECT-21H00961
[Journal Article] Decoding reward?curiosity conflict in decision-making from irrational behaviors2023
- Author(s)
  Konaka Yuki、Naoki Honda
- Journal Title
  
  Nature Computational Science
  
  Volume: 3 Issue: 5 Pages: 418-432
- DOI
  10.1038/s43588-023-00439-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-21H05167, KAKENHI-PLANNED-21H05170
[Journal Article] Regulation of male germline transmission patterns by the Trp53-Cdkn1a pathway2022
- Author(s)
  Kanatsu-Shinohara Mito、Naoki Honda、Tanaka Takashi、Tatehana Misako、Kikkawa Takako、Osumi Noriko、Shinohara Takashi
- Journal Title
  
  Stem Cell Reports
  
  Volume: 17 Issue: 9 Pages: 1924-1941
- DOI
  10.1016/j.stemcr.2022.07.007
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K19322, KAKENHI-PROJECT-22K19429, KAKENHI-ORGANIZER-21H05167, KAKENHI-PROJECT-18H05281, KAKENHI-PROJECT-20J22054
[Journal Article] Stem cell homeostasis regulated by hierarchy and neutral competition2022
- Author(s)
  Nakamuta Asahi、Yoshido Kana、Naoki Honda
- Journal Title
  
  Communications Biology
  
  Volume: 5 Issue: 1
- DOI
  10.1038/s42003-022-04218-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Journal Article] Model-based prediction of spatial gene expression via generative linear mapping2021
- Author(s)
  Okochi Yasushi、Sakaguchi Shunta、Nakae Ken、Kondo Takefumi、Naoki Honda
- Journal Title
  
  Nature Communications
  
  Volume: 12 Issue: 1
- DOI
  10.1038/s41467-021-24014-x
- NAID
  120007089251
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-21H05167, KAKENHI-PROJECT-20J23385
[Journal Article] Hierarchical modeling of mechano-chemical dynamics of epithelial sheets across cells and tissue2021
- Author(s)
  Asakura Yoshifumi、Kondo Yohei、Aoki Kazuhiro、Naoki Honda
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 4069-4069
- DOI
  10.1038/s41598-021-83396-6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-19H05675, KAKENHI-PUBLICLY-19H04776, KAKENHI-PUBLICLY-19H05438, KAKENHI-PLANNED-19H05798, KAKENHI-PROJECT-18H02444, KAKENHI-PROJECT-20J15811, KAKENHI-ORGANIZER-19H05670, KAKENHI-ORGANIZER-19H05794
[Journal Article] Noise-resistant developmental reproducibility in vertebrate somite formation2019
- Author(s)
  Honda N*, Akiyama R, Sari DWK, Ishii S, Bessho Y and Matsui T
- Journal Title
  
  PLoS Computational Biology
  
  Volume: 15(2) Issue: 2 Pages: e1006579-e1006579
- DOI
  10.1371/journal.pcbi.1006579
- NAID
  120006553009
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K16147, KAKENHI-PROJECT-17K15127, KAKENHI-PROJECT-16K14737, KAKENHI-PROJECT-16K15220, KAKENHI-PROJECT-15H04322, KAKENHI-PUBLICLY-17H05768, KAKENHI-PROJECT-18H02451
[Journal Article] Identification of animal behavioral strategies by inverse reinforcement learning.2018
- Author(s)
  Yamaguchi S, Honda N*, Ikeda M, Tsukada Y, Nakano S, Mori I and Ishii S
- Journal Title
  
  PLoS Computational Biology
  
  Volume: 14(5) Issue: 5 Pages: e1006122-e1006122
- DOI
  10.1371/journal.pcbi.1006122
- NAID
  120006469168
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K16147, KAKENHI-PUBLICLY-18H05123, KAKENHI-PROJECT-16H02516, KAKENHI-PROJECT-16H02873, KAKENHI-PLANNED-17H06310
[Journal Article] Time-lapse observation of stepwise regression of Erk activity in zebrafish presomitic mesoderm.2018
- Author(s)
  Sari DWK, Akiyama R, Naoki H, Ishijima H, Bessho Y, Matsui T
- Journal Title
  
  Scientific Reports
  
  Volume: 8 Issue: 1 Pages: 4335-4335
- DOI
  10.1038/s41598-018-22619-9
- NAID
  120006555360
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K15220, KAKENHI-PROJECT-16K16147, KAKENHI-PROJECT-17K15127, KAKENHI-PROJECT-16K14737, KAKENHI-PUBLICLY-17H05768, KAKENHI-PROJECT-15H04322
[Journal Article] Revisiting chemoaffinity theory: Chemotactic implementation of topographic axonal projection2017
- Author(s)
  Honda Naoki
- Journal Title
  
  PLoS Computational Biology
  
  Volume: 13 Issue: 8 Pages: 8-8
- DOI
  10.1371/journal.pcbi.1005702
- NAID
  120006360789
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K16147
[Journal Article] Discovery of long-range inhibitory signaling to ensure single axon formation2017
- Author(s)
  Takano Tetsuya、Wu Mengya、Nakamuta Shinichi、Naoki Honda、Ishizawa Naruki、Namba Takashi、Watanabe Takashi、Xu Chundi、Hamaguchi Tomonari、Yura Yoshimitsu、Amano Mutsuki、Hahn Klaus M.、Kaibuchi Kozo
- Journal Title
  
  Nature Communications
  
  Volume: 8 Issue: 1 Pages: 33-33
- DOI
  10.1038/s41467-017-00044-2
- NAID
  120006325188
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07383, KAKENHI-PROJECT-16K16147, KAKENHI-PUBLICLY-17H05561, KAKENHI-PUBLICLY-17H05693, KAKENHI-PROJECT-15J03173, KAKENHI-PROJECT-17J09461, KAKENHI-PROJECT-17H01380
[Journal Article] Propagating Wave of ERK Activation Orients Collective Cell Migration2017
- Author(s)
  Aoki Kazuhiro、Kondo Yohei、Naoki Honda、Hiratsuka Toru、Itoh Reina E.、Matsuda Michiyuki
- Journal Title
  
  Developmental Cell
  
  Volume: 43 Issue: 3 Pages: 305-317.e5
- DOI
  10.1016/j.devcel.2017.10.016
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0069, KAKENHI-PROJECT-16K16147, KAKENHI-PUBLICLY-16H01425, KAKENHI-PUBLICLY-16H01447
[Journal Article] Self-organization mechanism of distinct microtubule orientations in axons and dendrites2017
- Author(s)
  Honda Naoki, Katsuhiro Uegaki, Shin Ishii
- Journal Title
  
  bioRxiv
  
  Volume: 163014 Pages: 1-18
- DOI
  10.1101/163014
- Open Access
- Data Source
  KAKENHI-PROJECT-16K16147
[Journal Article] Nonrandom contribution of left and right testes to germline transmission from mouse spermatogonial stem cells2017
- Author(s)
  Mito Kanatsu-Shinohara, Honda Naoki, Takashi Shinohara
- Journal Title
  
  Biology of Reproduction
  
  Volume: 97(6) Issue: 6 Pages: 902-910
- DOI
  10.1093/biolre/iox141
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K16147, KAKENHI-PLANNED-25112003, KAKENHI-PROJECT-15K14362
[Journal Article] Identification of animal behavioral strategies by inverse reinforcement learning2017
- Author(s)
  Yamaguchi S, Honda N, Ikeda M, Tsukada Y, Nakano S, Mori I and Ishii S
- Journal Title
  
  bioRxiv
  
  Volume: 129007 Pages: 129007-129007
- DOI
  10.1101/129007
- NAID
  120006469168
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07499, KAKENHI-PROJECT-16K16147, KAKENHI-PUBLICLY-16H01272, KAKENHI-PUBLICLY-16H01333, KAKENHI-PROJECT-16H02516
[Journal Article] Reconstruction of spatial thermal gradient encoded in thermosensory neuron AFD in Caenorhabditis elegans.2016
- Author(s)
  Tsukada, Y., Yamao, M., Honda, N., Shimowada, T., Ohnishi, N., Kuhara, A., Ishii, S., Mori, I.
- Journal Title
  
  J Neurosci.
  
  Volume: 36 Issue: 9 Pages: 2571-2581
- DOI
  10.1523/jneurosci.2837-15.2016
- NAID
  120006360790
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K14574, KAKENHI-PROJECT-26560459, KAKENHI-PROJECT-24247001, KAKENHI-PROJECT-25730177, KAKENHI-PLANNED-15H05928, KAKENHI-PROJECT-15H04404, KAKENHI-PROJECT-26640018
[Journal Article] Intercellular propagation of extracellular signal-regulated kinase activation revealed by in vivo imaging of mouse skin.2015
- Author(s)
  Hiratsuka T, Fujita Y, Naoki H, Aoki K, Kamioka Y, Matsuda M
- Journal Title
  
  eLife
  
  Volume: - Pages: 1-18
- DOI
  10.7554/elife.05178
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-12J04257, KAKENHI-ORGANIZER-22113001, KAKENHI-PUBLICLY-25117715, KAKENHI-PROJECT-25730177, KAKENHI-PROJECT-26290053, KAKENHI-PROJECT-26830070, KAKENHI-PLANNED-22113002, KAKENHI-PLANNED-15H05949
[Journal Article] Distinct predictive performance of Rac1 and Cdc42 in cell migration.2015
- Author(s)
  Masataka Yamao, Honda Naoki, Katsuyuki Kunida, Kazuhiro Aoki, Michiyuki Matsuda, Shin Ishii
- Journal Title
  
  Scientific Reports
  
  Volume: 5:17527 Issue: 1 Pages: 1-14
- DOI
  10.1038/srep17527
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25730177
[Journal Article] 細胞移動のシステム同定2014
- Author(s)
  本田直樹、山尾将隆、石井信
- Journal Title
  
  生命の科学
  
  Volume: 65 Pages: 468-469
- Data Source
  KAKENHI-PROJECT-25730177
[Journal Article] Mathematical modeling of neuronal polarization during development2014
- Author(s)
  Honda Naoki, Shin Ishii
- Journal Title
  
  Progress in Molecular Biology and Translational Science
  
  Volume: 41 Pages: 123-127
- DOI
  10.1016/b978-0-12-397897-4.00003-6
- ISBN
  9780123978974
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22115012, KAKENHI-PROJECT-25730177
[Presentation] Adaptive discrimination between harmful and harmless antigens by predictive coding in immune system2024
- Author(s)
  Kana Yoshido, Honda Naoki
- Organizer
  Winter q-bio 2024
- Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] データ駆動的アプローチによってリスク選択行動における楽観・悲観バイアスを読み解く2024
- Author(s)
  東野伊織、横山寛、伊東諒、加藤利佳子、雨森賢一、本田直樹
- Organizer
  CPSY TOKYO 2024
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] リスク選択行動における認識の歪みとしての楽観・悲観バイアスのデータ駆動的解読2024
- Author(s)
  東野伊織, 横山寛, 伊東諒, 加藤利佳子, 雨森賢一, 本田直樹
- Organizer
  定量生物の会第十一回年会
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] データ駆動的アプローチによってリスク選択行動における楽観・悲観バイアスを読み解く2024
- Author(s)
  東野伊織, 横山寛, 伊東諒, 加藤利佳子, 雨森賢一, 本田直樹
- Organizer
  CPSY TOKYO
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] Adaptive discrimination between harmful and harmless antigens by predictive coding in immune system2024
- Author(s)
  Kana Yoshido, Honda Naoki
- Organizer
  Winter q-bio 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] 機械学習による「心の揺れ・葛藤」の解読 -報酬をとるか好奇心に従うか-2023
- Author(s)
  本田直樹
- Organizer
  若手・中堅脳科学研究者のオンライン勉強会
- Invited
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] 免疫系における予測符号化に基づく適応的な抗原の有害/無害識別2023
- Author(s)
  吉戸香奈、本田直樹
- Organizer
  2023年度日本数理生物学会年会
- Invited
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] 機械学習による「心の揺れ・葛藤」の解読：報酬をとるか好奇心に従うか2023
- Author(s)
  本田直樹
- Organizer
  若手・中堅脳科学研究者のオンライン勉強会
- Invited
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] 神経回路形成・意思決定のデータ駆動生物学2023
- Author(s)
  本田直樹
- Organizer
  第８回サロン・ド・脳
- Invited
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] 自由エネルギー原理に基づいた楽観・悲観バイアスのデータ駆動的解読2023
- Author(s)
  東野伊織、横山寛、伊東諒、加藤利佳子、雨森賢一、本田直樹
- Organizer
  第26回情報論的学習理論ワークショップ(IBIS2023)
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] リスク選択行動における認識の歪みとしての楽観・悲観バイアスのデータ駆動的解読2023
- Author(s)
  東野伊織、横山寛、伊東諒、加藤利佳子、雨森賢一、本田直樹
- Organizer
  定量生物の会第十一回年会
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] リスク選択行動における楽観・悲観のバイアスのデータから読み解く2023
- Author(s)
  東野伊織、横山寛、伊東諒、加藤利佳子、雨森賢一、本田直樹
- Organizer
  第5回共調的社会脳研究会
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] データ駆動生物学：遺伝子から細胞、臓器、心まで2023
- Author(s)
  本田直樹
- Organizer
  第8回OUバイオインフォマティクスセンターセミナー
- Invited
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] 神経回路形成・意思決定のデータ駆動生物学2023
- Author(s)
  本田直樹
- Organizer
  第８回サロン・ド・脳
- Invited
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] 免疫系における予測符号化に基づく適応的な抗原の有害/無害識別2023
- Author(s)
  吉戸香奈, 本田直樹
- Organizer
  2023年度日本数理生物学会年会企画シンポジウム「理論免疫学による免疫システムの統合的な理解 -基礎から臨床まで-」
- Invited
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] Adaptive immune discrimination of antigen risks by predictive coding2023
- Author(s)
  Kana Yoshido, Honda Naoki
- Organizer
  2023 International Congress on Industrial and Applied Mathematics
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] リスク選択行動における楽観・悲観のバイアスのデータから読み解く2023
- Author(s)
  東野伊織, 横山寛, 伊東諒, 加藤利佳子, 雨森賢一, 本田直樹
- Organizer
  第5回共調的社会脳研究会
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] 自由エネルギー原理に基づいた楽観・悲観バイアスのデータ駆動的解読2023
- Author(s)
  東野伊織, 横山寛, 伊東諒, 加藤利佳子, 雨森賢一, 本田直樹
- Organizer
  第26回情報論的学習理論ワークショップ(IBIS2023)
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] データ駆動生物学 -遺伝子から細胞、臓器、心まで-2023
- Author(s)
  本田直樹
- Organizer
  第8回OUバイオインフォマティクスセンターセミナー
- Invited
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] 機械学習による「心の揺れ・葛藤」の解読：報酬をとるか好奇心をに従うか2023
- Author(s)
  本田直樹
- Organizer
  第53回日本神経精神薬理学会年会
- Invited
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] リスク選択行動時における過去の経験と現在の観測の間の心理的葛藤2023
- Author(s)
  東野伊織, 横山寛, 伊東諒, 加藤利佳子, 雨森賢一, 本田直樹
- Organizer
  第33回日本神経回路学会全国大会
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] Adaptive immune discrimination of antigen risks by predictive coding2023
- Author(s)
  Kana Yoshido, Honda Naoki
- Organizer
  2023 International Congress on Industrial and Applied Mathematics
- Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] 機械学習による「心の揺れ・葛藤」の解読：報酬をとるか好奇心をに従うか2023
- Author(s)
  本田直樹
- Organizer
  第53回日本神経精神薬理学会年会　シンポジウム「ひきこもりの意思決定の基礎・臨床・理論によるトランスレーショナルリサーチ」
- Invited
- Data Source
  KAKENHI-ORGANIZER-21H05167
[Presentation] リスク選択行動における認識の歪みとしての楽観・悲観バイアスのデータ駆動的解読2023
- Author(s)
  東野伊織、横山寛、伊東諒、加藤利佳子、雨森賢一、本田直樹
- Organizer
  理論生物学スプリングスクール2024
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] 免疫系における予測符号化に基づく適応的な抗原の有害/無害識別2023
- Author(s)
  吉戸香奈、本田直樹
- Organizer
  2023年度日本数理生物学会年会
- Invited
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] Adaptive discrimination between harmful and harmless antigens in the immune system by predictive coding2023
- Author(s)
  Kana Yoshido, Honda Naoki
- Organizer
  RIKEN-Tsinghua International Summer Program (RISP) 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] Data-driven decoding of mental conflict in decision-making2022
- Author(s)
  Honda Naoki
- Organizer
  NEURO2022
- Invited
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] 生命システムのデータ駆動モデリング2021
- Author(s)
  本田直樹
- Organizer
  第1回分子サイバネティクス・分子ロボティクス定例研究会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H04776
[Presentation] Decoding reward-curiosity conflict in probabilistic bandit task2021
- Author(s)
  Honda Naoki
- Organizer
  International free energy principle workshop
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05170
[Presentation] 数学で生物リズムの機能的意義を考える：体節形成・集団的細胞移動2020
- Author(s)
  本田直樹
- Organizer
  生物リズム若手研究者の集い2020
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H04776
[Presentation] 行動に潜在する戦略と葛藤のデータ駆動的解読2020
- Author(s)
  本田直樹
- Organizer
  数理生物学セミナー2020
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H04776
[Presentation] 多細胞動態を司る支配方程式のデータ駆動的解読2020
- Author(s)
  本田直樹
- Organizer
  数理生物学会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H04776
[Presentation] 逆強化学習による「動物の行動戦略」の解読2020
- Author(s)
  本田直樹
- Organizer
  第４３回日本神経科学大会シンポジウム「センシングとAIが結ぶ神経科学と生態学」
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H04776
[Presentation] 多細胞動態を司る支配方程式のデータ駆動的解読2020
- Author(s)
  本田直樹
- Organizer
  公立はこだて未来大学・第3回複雑系知能セミナー
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H04776
[Presentation] Deciphering animal behavioral strategy by inverse reinforcement learning2019
- Author(s)
  Honda Naoki
- Organizer
  2019 A3 Workshop on Mathematical Life Science
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] Inverse Reinforcement Learning and Active Inference in Gradient Sensing Behavior2019
- Author(s)
  Honda Naoki
- Organizer
  Computational Principles in Active Perception and Reinforcement Learning in the Brain
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] Identification of animal behavioral strategy by inverse reinforcement learning2019
- Author(s)
  Honda Naoki
- Organizer
  International Conference of Systems Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] Identification of animal behavioral and learning principles by inverse reinforcement learning.2019
- Author(s)
  Honda Naoki
- Organizer
  NSI workshop 2019 ～Neural Mechanisms underlying Behavior～
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] 逆強化学習による「動物の行動戦略」のデータ駆動的解読2019
- Author(s)
  本田直樹
- Organizer
  生物工学会
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] 逆強化学習による動物行動戦略の解読2019
- Author(s)
  本田直樹
- Organizer
  生理研研究会2019 認知神経科学の先端「脳の理論から身体・世界へ」
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] Identification of Animal Behavioral Strategies by Inverse Reinforcement Learning2018
- Author(s)
  Naoki Honda
- Organizer
  神経科学会
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] 動物の行動戦略を解読する逆強化学習~線虫行動への応用~2018
- Author(s)
  本田直樹、池田宗樹
- Organizer
  定量生物学の会
- Invited
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] Identification of Animal Behavioral Strategies by Inverse Reinforcement Learning2018
- Author(s)
  本田直樹
- Organizer
  Mortor Contol研究会
- Invited
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] トポグラフィックな神経軸索投射の走化性メカニズム2017
- Author(s)
  本田直樹
- Organizer
  日本数理生物学会年会
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] Chemotactic mechanism for topographic map formation2017
- Author(s)
  Honda Naoki
- Organizer
  日本神経科学大会
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] Chemotactic implementation of topographic map formation2017
- Author(s)
  Honda Naoki
- Organizer
  日本神経回路学会全国大会
- Data Source
  KAKENHI-PROJECT-16K16147
[Presentation] 神経軸索の走化性と神経回路形成の数理的アプローチ2016
- Author(s)
  本田直樹
- Organizer
  第１２１回日本解剖学会総会
- Place of Presentation
  ビックパレット福島
- Year and Date
  2016-03-28
- Invited
- Data Source
  KAKENHI-PROJECT-25730177
[Presentation] 細胞内シグナルが制御する細胞移動のシステム同定2014
- Author(s)
  本田直樹
- Organizer
  数学協働プログラム「生命ダイナミックスの数理とその応用」
- Place of Presentation
  東京大学　駒場キャンパス
- Invited
- Data Source
  KAKENHI-PROJECT-25730177
[Presentation] A Model of Orientational Organization of Microtubule in Axon and Dendrite during Polarization2014
- Author(s)
  Katsuhiro Uegaki, Honda Naoki and Shin Ishii
- Organizer
  2014 Winter q-bio Meeting
- Place of Presentation
  Big island in hawaii
- Data Source
  KAKENHI-PROJECT-25730177
[Presentation] 神経軸索誘導における誘引的および忌避的走化性の数理モデル
- Author(s)
  本田直樹
- Organizer
  生命ダイナミクスの数理とその応用：異分野とのさらなる融合
- Place of Presentation
  東京大学大学院数理科学研究科　大講義室
- Year and Date
  2014-12-02 – 2014-12-04
- Invited
- Data Source
  KAKENHI-PROJECT-25730177
[Presentation] 外部シグナルに制御される細胞集団移動の数理モデル
- Author(s)
  村瀬晃生, 本田直樹, 石井信
- Organizer
  電子情報通信学会技術研究報告NC
- Place of Presentation
  玉川大学
- Year and Date
  2015-03-16 – 2015-03-17
- Data Source
  KAKENHI-PROJECT-25730177

1. Yoshimura Shigehiro (90346106)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. Osakada Fumitaka (60455334)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 雨森賢一 (70344471)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
4. 山田恭史 (80802561)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. 青木一洋 (80511427)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
6. MATSUI Takaaki

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
7. 天野睦紀

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
8. 斉藤稔

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
9. 別所康全

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
10. 中野俊詩

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
11. 吉川貴子

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
12. 山下典子

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
13. 石井信

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
14. 近藤洋平

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
15. 森郁恵

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
16. 塚田祐基

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
17. 小川正晃

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
18. 伊佐正

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Honda Naoki 本田 直樹

Research Projects

Research Products

Co-Researchers

Frontiers in brain and life sciences on active information gain in an uncertain environment

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Establishment of new free energy principlePrincipal Investigator

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Data-driven identification of governing equations for multicellular dynamicsPrincipal Investigator

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Analyses of cortical actin dynamics by live-cell imaging and machine-learning

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脳回路構築における軸索配線原理の解読Principal Investigator

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Identification of neural basis of animal behavioral strategy by inverse reinforcement learningPrincipal Investigator

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Toward cytoskeleton-based understanding of neuronal morphogenesisPrincipal Investigator

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[Book] 実験医学増刊 Vol.38 No.20「機械学習を生命科学に使う！」2020

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[Book] 実験医学増刊 Vol.38 No.20「機械学習を生命科学に使う！」2020

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[Book] AI導入によるバイオテクノロジーの発展2018

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[Book] 実験医学2017年5月号2017

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[Journal Article] Intercellular exchange of Wnt ligands reduces cell population heterogeneity during embryogenesis2023

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[Journal Article] Multidimensional fractal scaling analysis using higher order moving average polynomials and its fast algorithm2023

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[Journal Article] Adaptive discrimination between harmful and harmless antigens in the immune system by predictive coding2023

Author(s)

Honda Naoki 本田直樹