Tsuchiya Yuko 土屋裕子

Researcher Number	30557773
Other IDs
Affiliation (Current)	2025: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 主任研究員
Affiliation (based on the past Project Information) *help	2018 – 2024: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 主任研究員 2017: 大阪大学, たんぱく質研究所, 助教
Review Section/Research Field	Principal Investigator Basic Section 62010:Life, health and medical informatics-related / Life / Health / Medical informatics Except Principal Investigator Transformative Research Areas, Section (III)
Keywords	Principal Investigator オートエンコーダー / 創薬 / 深層学習 / シミュレーション / 疾病発症機構 / 分子動力学シミュレーション / 創薬スクリーニング / スクリーニング / 天然変性領域 / コンピューターシミュレーション / 構造バイオインフォマティクス … More Except Principal Investigator … More 祖先型遺伝子 / 機械学習 / 分子進化 / 光合成 / 生命分子計算 Less

Decoding the environmental adaptation strategies of photo-synthesis system via restoration of ancient proteins
- Principal Investigator
  
  白井剛
- Project Period (FY)
  2023 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Nagahama Institute of Bio-Science and Technology
オートエンコーダーを用いたSTINGの恒常的活性化メカニズムの解明Principal Investigator
- Principal Investigator
  
  土屋裕子
- Project Period (FY)
  2021 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  National Institute of Advanced Industrial Science and Technology
Elucidation of the STING activation mechanism considering the dynamicsPrincipal Investigator
- Principal Investigator
  
  Tsuchiya Yuko
- Project Period (FY)
  2017 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  National Institute of Advanced Industrial Science and Technology
  Osaka University

All 2022 2021 2020 2019 2018 2017

All Journal Article Presentation

[Journal Article] Structure-based analyses of gut microbiome-related proteins by neural networks and molecular dynamics simulations2022
- Author(s)
  Taneishi Kei、Tsuchiya Yuko
- Journal Title
  
  Current Opinion in Structural Biology
  
  Volume: 73 Pages: 102336-102336
- DOI
  10.1016/j.sbi.2022.102336
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K00405, KAKENHI-PROJECT-21K12134
[Journal Article] Autoencoder-based detection of the residues involved in G protein-coupled receptor signaling2021
- Author(s)
  Tsuchiya Yuko、Taneishi Kei、Yonezawa Yasushige
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 19867-19867
- DOI
  10.1038/s41598-021-99019-z
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K05620, KAKENHI-PROJECT-17K00405
[Journal Article] Autoencoder-Based Detection of Dynamic Allostery Triggered by Ligand Binding Based on Molecular Dynamics2019
- Author(s)
  Yuko Tsuchiya, Kei Taneishi, Yasushige Yonezawa
- Journal Title
  
  J. Chem. Inf. Model.
  
  Volume: 59 Issue: 9 Pages: 4043-4051
- DOI
  10.1021/acs.jcim.9b00426
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K00405, KAKENHI-PROJECT-17K05620
[Journal Article] 生物学研究の仮説生成のためのシミュレーション：学際研究への応用に向けて2017
- Author(s)
  土屋裕子、水口賢司
- Journal Title
  
  シミュレーション
  
  Volume: 36 Pages: 139-144
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K00405
[Presentation] オートエンコーダーに基づくGPCRシグナル伝達経路解析2021
- Author(s)
  土屋裕子、種石慶、米澤康滋
- Organizer
  第21回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-21K12134
[Presentation] オートエンコーダーに基づくGPCRシグナル伝達経路解析2021
- Author(s)
  土屋裕子、種石慶、米澤康滋
- Organizer
  第21回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-17K00405
[Presentation] Autoencoder-based analyses of dynamic allostery on GPCR2020
- Author(s)
  Tsuchiya Y, Taneishi K, Yonezawa Y
- Organizer
  第58回日本生物物理学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-17K00405
[Presentation] Autoencoder-based Analyses of Dynamic Allostery on Proteins by Regulator Binding2019
- Author(s)
  Tsuchiya Y, Taneishi K, Yonezawa Y
- Organizer
  CBI学会2019年大会
- Data Source
  KAKENHI-PROJECT-17K00405
[Presentation] Autoencoder-based analyses of dynamic allostery on proteins by regulator binding2019
- Author(s)
  Tsuchiya Y, Taneishi K, Yonezawa Y
- Organizer
  第57回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-17K00405
[Presentation] Effects of single mutations on STING activation2018
- Author(s)
  土屋裕子、種石慶、米澤康滋
- Organizer
  CBI学会2018年大会
- Data Source
  KAKENHI-PROJECT-17K00405
[Presentation] 分子動力学シミュレーションによる化合物活性の評価法の構築2017
- Author(s)
  土屋裕子、水口賢司
- Organizer
  第17回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-17K00405

1. 白井剛 (00262890)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. 嶺井隆平 (20872451)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 土方敦司 (80415273)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 米澤康滋

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Tsuchiya Yuko 土屋 裕子

Research Projects

Research Products

Co-Researchers

Decoding the environmental adaptation strategies of photo-synthesis system via restoration of ancient proteins

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

オートエンコーダーを用いたSTINGの恒常的活性化メカニズムの解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Elucidation of the STING activation mechanism considering the dynamicsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Structure-based analyses of gut microbiome-related proteins by neural networks and molecular dynamics simulations2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Autoencoder-based detection of the residues involved in G protein-coupled receptor signaling2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Autoencoder-Based Detection of Dynamic Allostery Triggered by Ligand Binding Based on Molecular Dynamics2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] 生物学研究の仮説生成のためのシミュレーション：学際研究への応用に向けて2017

Author(s)

Journal Title

Data Source

[Presentation] オートエンコーダーに基づくGPCRシグナル伝達経路解析2021

Author(s)

Organizer

Data Source

[Presentation] オートエンコーダーに基づくGPCRシグナル伝達経路解析2021

Author(s)

Organizer

Data Source

[Presentation] Autoencoder-based analyses of dynamic allostery on GPCR2020

Author(s)

Organizer

Data Source

[Presentation] Autoencoder-based Analyses of Dynamic Allostery on Proteins by Regulator Binding2019

Author(s)

Organizer

Data Source

[Presentation] Autoencoder-based analyses of dynamic allostery on proteins by regulator binding2019

Author(s)

Organizer

Data Source

[Presentation] Effects of single mutations on STING activation2018

Author(s)

Organizer

Data Source

[Presentation] 分子動力学シミュレーションによる化合物活性の評価法の構築2017

Author(s)

Organizer

Data Source

Tsuchiya Yuko 土屋裕子