NAKAMURA RYOHEI 中村遼平

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NAKAMURA Ryohei 中村遼平

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Researcher Number	30756458
Other IDs
Affiliation (Current)	2022: 東京大学, 大学院理学系研究科(理学部), 助教
Affiliation (based on the past Project Information) *help	2016 – 2022: 東京大学, 大学院理学系研究科(理学部), 助教 2017: 岡山大学, 大学院自然科学研究科, 助教授 2016: 東京大学, 理学(系)研究科(研究院), 助教
Review Section/Research Field	Principal Investigator Basic Section 43010:Molecular biology-related / Developmental biology / Genome biology / Biological Sciences Except Principal Investigator Constructive Systems Biology / Neurophysiology / General neuroscience
Keywords	Principal Investigator クロマチン３次元構造 / クロマチン / 脊椎動物 / リプログラミング / 初期発生 / メダカ / 初期胚 / 転写因子 / リプログラミンング / オープンクロマチン … More / 受精卵 / クロマチン構造 / エピゲノム / 発生 / コヒーシン / クロマチンループ / DNAメチル化 … More Except Principal Investigator 神経新生 / 脳発達 / 細胞系譜単位 / 顔領域 / クローナルユニット / パリウム / ATAC-Seq / RNA-Seq / 終脳 / 細胞系譜 / 神経幹細胞 / 硬骨魚類 / メダカ / 神経科学 / 細胞系譜解析 / 生物学 Less

原腸形成期におけるTAD形成によるクロマチンポテンシャル変化Principal Investigator
- Principal Investigator
  
  中村遼平
- Project Period (FY)
  2021 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
脊椎動物におけるglobal DNAメチル化の機能の解明Principal Investigator
- Principal Investigator
  
  中村遼平
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43010:Molecular biology-related
- Research Institution
  The University of Tokyo
Establishment mechanism of 3D chromatin structurePrincipal Investigator
- Principal Investigator
  
  Nakamura Ryohei
- Project Period (FY)
  2018 – 2021
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43010:Molecular biology-related
- Research Institution
  The University of Tokyo
The basic design of post-hatch development of the pallium and examination of its emergent properties
- Principal Investigator
  
  TAKEUCHI Hideaki
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Constructive Systems Biology
- Research Institution
  Okayama University
Chromatin accessibility dynamics during early embryogenesisPrincipal Investigator
- Principal Investigator
  
  Nakamura Ryohei
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Developmental biology
  Genome biology
- Research Institution
  The University of Tokyo
Clonal analysis in the medaka telencephalon
- Principal Investigator
  
  Yasuko Isoe
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Research Activity Start-up
- Research Field
  
  Neurophysiology / General neuroscience
- Research Institution
  Okayama University

All 2021 2019 2018 2017 2016

All Journal Article Presentation

[Journal Article] CTCF looping is established during gastrulation in medaka embryos2021
- Author(s)
  Ryohei Nakamura, Yuichi Motai, Masahiko Kumagai, Candice L. Wike, Haruyo Nishiyama, Yoichiro Nakatani, Neva C. Durand, Kaori Kondo, Takashi Kondo, Tatsuya Tsukahara, Atsuko Shimada, Bradley R. Cairns, Erez Lieberman Aiden, Shinichi Morishita, and Hiroyuki Takeda
- Journal Title
  
  Genome Research
  
  Volume: 31
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14620
[Journal Article] Methylome inheritance and enhancer dememorization reset an epigenetic gate safeguarding embryonic programs2021
- Author(s)
  Wu Xiaotong、Zhang Hongmei、Zhang Bingjie、Zhang Yu、Wang Qiuyan、Shen Weimin、Wu Xi、Li Lijia、Xia Weikun、Nakamura Ryohei、Liu Bofeng、Liu Feng、Takeda Hiroyuki、Meng Anming、Xie Wei
- Journal Title
  
  Science Advances
  
  Volume: 7
- DOI
  10.1126/sciadv.abl3858
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21K06013
[Journal Article] Chromatin architecture transitions from zebrafish sperm through early embryogenesis2021
- Author(s)
  Candice L Wike, Yixuan Guo, Mengyao Tan, Ryohei Nakamura, Dana Shaw, Noelia Diaz, Aneasha F. Whittaker-Tademy, Neva C. Durand, Erez Lieberman Aiden, Juanma Vaquerizas , David Grunwald, Hiroyuki Takeda, and Bradley R. Cairns
- Journal Title
  
  Genome Research
  
  Volume: 31
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14620
[Journal Article] Targeted in vivo epigenome editing of H3K27me32019
- Author(s)
  Fukushima Hiroto S.、Takeda Hiroyuki、Nakamura Ryohei
- Journal Title
  
  Epigenetics & Chromatin
  
  Volume: 12
- DOI
  10.1186/s13072-019-0263-z
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K14620, KAKENHI-PROJECT-18J21761, KAKENHI-PROJECT-16K20975
[Journal Article] A Nearly Complete Genome of Ciona intestinalis Type A (C.?robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona2019
- Author(s)
  Satou Yutaka、Nakamura Ryohei、Yu Deli、Yoshida Reiko、Hamada Mayuko、Fujie Manabu、Hisata Kanako、Takeda Hiroyuki、Satoh Noriyuki
- Journal Title
  
  Genome Biology and Evolution
  
  Volume: 11 Pages: 3144-3157
- DOI
  10.1093/gbe/evz228
- NAID
  120006770371
- Data Source
  KAKENHI-PROJECT-18K14620
[Journal Article] Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts2017
- Author(s)
  Ryohei Nakamura, Ayako Uno, Masahiko Kumagai, Shinichi Morishita and Hiroyuki Takeda
- Journal Title
  
  Epigenetics & Chromatin
  
  Volume: 10 Pages: 44-44
- DOI
  10.1186/s13072-017-0152-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K20975, KAKENHI-PROJECT-16H06279
[Journal Article] Comparative Analysis of Genome and Epigenome in Closely Related Medaka Species Identifies Conserved Sequence Preferences for DNA Hypomethylated Domains2016
- Author(s)
  Ayako Uno, Ryohei Nakamura, Tatsuya Tsukahara, Wei Qu, Sumio Sugano, Yutaka Suzuki, Shinichi Morishita & Takeda, H.
- Journal Title
  
  Zoological Science
  
  Volume: 33 Issue: 4 Pages: 358-358
- DOI
  10.2108/zs160030
- NAID
  210000185148
- ISSN
  0289-0003
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25291048, KAKENHI-PROJECT-16K20975
[Presentation] Establishment of the three-dimensional genome structure during medaka fish development2019
- Author(s)
  Ryohei Nakamura
- Organizer
  Keystone Symposia, 3D Genome: Gene Regulation and Disease
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14620
[Presentation] Establishment of the three-dimensional genome structure during medaka fish development2019
- Author(s)
  Ryohei Nakamura
- Organizer
  Keystone Symposia, 3D Genome: Gene Regulation and Disease
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K20975
[Presentation] Establishment of the three-dimensional genome structure in medaka fish embryos2018
- Author(s)
  Ryohei Nakamura
- Organizer
  Keystone Symposia Chromatin Architecture and Chromosome Organization
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K20975
[Presentation] 生後の神経新生を介したメダカ終脳構築機構の解析から探る、硬骨魚類の終脳進化機構2016
- Author(s)
  磯江泰子,中村遼平, 亀井保博, 野中茂紀, 奥山輝大, 清水厚志, 久保健雄, 武田洋幸, 竹内秀明
- Organizer
  日本進化学会第18回年会
- Data Source
  KAKENHI-PROJECT-16H06987
[Presentation] Analysis of construction mechanism of medaka telencephalon by post-hatch neurogenesis.2016
- Author(s)
  Yasuko Isoe, Ryohei Nakamura,　Yasuhiro Kamei,　Shigenori Nonaka,　Teruhiro Okuyama, Atsushi Shimizu,　Takeo Kubo,　Hiroyuki Takeda,　Hideaki Takeuchi
- Organizer
  Society for Neuroscience
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06987
[Presentation] メダカの成長過程における社会性の発達と終脳の発達2016
- Author(s)
  磯江泰子,中村遼平, 亀井保博, 野中茂紀, 奥山輝大, 清水厚志, 久保健雄, 武田洋幸, 竹内秀明
- Organizer
  行動遺伝学研究会
- Data Source
  KAKENHI-PROJECT-16H06987
[Presentation] Analysis of construction mechanism of medaka telencephalon by post-hatch neurogenesis.2016
- Author(s)
  Yasuko Isoe, Ryohei Nakamura,　Yasuhiro Kamei,　Shigenori Nonaka,　Teruhiro Okuyama, Atsushi Shimizu,　Takeo Kubo,　Hiroyuki Takeda,　Hideaki Takeuchi
- Organizer
  Symposium of Wiring and Functional Principles of Neural Circuits
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06987

1. TAKEUCHI Hideaki (00376534)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
2. Yasuko Isoe (60786119)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
3. KAMEI Yasuhiro

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. NONAKA Shigenori

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. MORISHITA Shinichi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
6. 武田洋幸

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
7. 中村保一

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

NAKAMURA RYOHEI 中村 遼平

NAKAMURA Ryohei 中村 遼平

Research Projects

Research Products

Co-Researchers

原腸形成期におけるTAD形成によるクロマチンポテンシャル変化Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

脊椎動物におけるglobal DNAメチル化の機能の解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Establishment mechanism of 3D chromatin structurePrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

The basic design of post-hatch development of the pallium and examination of its emergent properties

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Chromatin accessibility dynamics during early embryogenesisPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Clonal analysis in the medaka telencephalon

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] CTCF looping is established during gastrulation in medaka embryos2021

Author(s)

Journal Title

Data Source

[Journal Article] Methylome inheritance and enhancer dememorization reset an epigenetic gate safeguarding embryonic programs2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Chromatin architecture transitions from zebrafish sperm through early embryogenesis2021

Author(s)

Journal Title

Data Source

[Journal Article] Targeted in vivo epigenome editing of H3K27me32019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A Nearly Complete Genome of Ciona intestinalis Type A (C.?robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona2019

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Comparative Analysis of Genome and Epigenome in Closely Related Medaka Species Identifies Conserved Sequence Preferences for DNA Hypomethylated Domains2016

Author(s)

Journal Title

DOI

NAID

ISSN

Data Source

[Presentation] Establishment of the three-dimensional genome structure during medaka fish development2019

Author(s)

Organizer

NAKAMURA RYOHEI 中村遼平

NAKAMURA Ryohei 中村遼平