Yamamoto Takaki 山本尚貴

Researcher Number	30805338
Other IDs
Affiliation (based on the past Project Information) *help	2019 – 2021: 国立研究開発法人理化学研究所, 生命機能科学研究センター, 研究員 2018: 国立研究開発法人理化学研究所, 生命機能科学研究センター, 訪問研究員 2017: 国立研究開発法人理化学研究所, 生命システム研究センター, 特別研究員
Review Section/Research Field	Principal Investigator Basic Section 43040:Biophysics-related / Biophysics
Keywords	Principal Investigator グラフニューラルネットワーク / 機械学習 / メカノバイオロジー / 上皮組織 / 生物物理 / トルク計測 / 細胞 / キラリティ / 細胞の力測定 / 細胞のキラリティ

Revealing the mechanism of mechanical regulation in minimal multi-cellular units of epithelial tissuesPrincipal Investigator
- Principal Investigator
  
  Yamamoto Takaki
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Institute of Physical and Chemical Research
細胞が生成するトルクの新規測定手法を用いたキラルな細胞動態の解明Principal Investigator
- Principal Investigator
  
  山本尚貴
- Project Period (FY)
  2017 – 2018
- Research Category
  
  Grant-in-Aid for Research Activity Start-up
- Research Field
  
  Biophysics
- Research Institution
  Institute of Physical and Chemical Research

All 2022 2021 2020 2019

All Journal Article Presentation

[Journal Article] Non-monotonic fluidization generated by fluctuating edge tensions in confluent tissues2022
- Author(s)
  Yamamoto Takaki、Sussman Daniel M.、Shibata Tatsuo、Manning M. Lisa
- Journal Title
  
  Soft Matter
  
  Volume: 18 Issue: 11 Pages: 2168-2175
- DOI
  10.1039/d0sm01559h
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16096, KAKENHI-PLANNED-22H05170
[Journal Article] Tracheal motile cilia in mice require CAMSAP3 for the formation of central microtubule pair and coordinated beating2021
- Author(s)
  Saito Hiroko、Matsukawa-Usami Fumiko、Fujimori Toshihiko、Kimura Toshiya、Ide Takahiro、Yamamoto Takaki、Shibata Tatsuo、Onoue Kenta、Okayama Satoko、Yonemura Shigenobu、Misaki Kazuyo、Soba Yurina、Kakui Yasutaka、Sato Masamitsu、Toya Mika、Takeichi Masatoshi
- Journal Title
  
  Molecular Biology of the Cell
  
  Volume: 32 Issue: 20 Pages: ar12-ar12
- DOI
  10.1091/mbc.e21-06-0303
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K16096, KAKENHI-PROJECT-21H02684, KAKENHI-PROJECT-16H06280
[Journal Article] Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks2021
- Author(s)
  Yamamoto Takaki、Cockburn Katie、Greco Valentina、Kawaguchi Kyogo
- Journal Title
  
  bioRxiv
  
  Volume: 2021.06.23.449559
- DOI
  10.1101/2021.06.23.449559
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16096
[Journal Article] Tracing the origin of hair follicle stem cells2021
- Author(s)
  Morita Ritsuko、Sanzen Noriko、Sasaki Hiroko、Hayashi Tetsutaro、Umeda Mana、Yoshimura Mika、Yamamoto Takaki、Shibata Tatsuo、Abe Takaya、Kiyonari Hiroshi、Furuta Yasuhide、Nikaido Itoshi、Fujiwara Hironobu
- Journal Title
  
  Nature
  
  Volume: 594 Issue: 7864 Pages: 547-552
- DOI
  10.1038/s41586-021-03638-5
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19K16096, KAKENHI-PROJECT-19K08763, KAKENHI-PROJECT-19K22631
[Journal Article] Cell cycle-dependent active stress drives epithelia remodeling2021
- Author(s)
  John Devany, Daniel M. Sussman, Takaki Yamamoto, M. Lisa Manning, Margaret L. Gardel
- Journal Title
  
  Proceedings of the National Academy of Sciences of the United States of America
  
  Volume: 118, 10 Issue: 10 Pages: 1-9
- DOI
  10.1073/pnas.1917853118
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16096
[Journal Article] Collective cell migration of epithelial cells driven by chiral torque generation2020
- Author(s)
  Yamamoto Takaki、Hiraiwa Tetsuya、Shibata Tatsuo
- Journal Title
  
  Physical Review Research
  
  Volume: 2 Issue: 4 Pages: 043326-043326
- DOI
  10.1103/physrevresearch.2.043326
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K03764, KAKENHI-PROJECT-19K16096
[Journal Article] Non-monotonic fluidization generated by fluctuating edge tensions in confluent tissues2020
- Author(s)
  Takaki Yamamoto, Daniel M. Sussman, Tatsuo Shibata, M. Lisa Manning
- Journal Title
  
  arXiv
  
  Volume: 2008.13007
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16096
[Journal Article] Collective cell migration of epithelial cells driven by chiral torque generation2019
- Author(s)
  Takaki Yamamoto, Tetsuya Hiraiwa and Tatsuo Shibata
- Journal Title
  
  arXiv
  
  Volume: 1909.02771
- Open Access
- Data Source
  KAKENHI-PROJECT-19K16096
[Journal Article] Reorientation behavior in the helical motility of light-responsive spiral droplets2019
- Author(s)
  Federico lancia, Takaki Yamamoto, Alexander Ryabchun, Tadatsugu Yamaguchi, Masaki Sano, Nathalie Katsonis
- Journal Title
  
  Nature Communications
  
  Volume: 10(5238) Issue: 1
- DOI
  10.1038/s41467-019-13201-6
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16096, KAKENHI-PROJECT-18J01239
[Presentation] グラフニューラルネットワークによる細胞間の時空間相互作用の推定2022
- Author(s)
  山本尚貴
- Organizer
  日本物理学会　第７７回年次大会
- Data Source
  KAKENHI-PROJECT-19K16096
[Presentation] Graph-based machine learning reveals rules of spatiotemporal cell interactions in tissues2022
- Author(s)
  Takaki Yamamoto
- Organizer
  RIKEN BDR Symposium 2022 “Emergence in Biological Systems: Emergence in Biological Systems: Challenges to Bridging Hierarchies”
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16096
[Presentation] Non-monotonic fluidization generated by fluctuating edge tensions in confluent tissues2021
- Author(s)
  Takaki Yamamoto, Daniel M. Sussman, Tatsuo Shibata, M. Lisa Manning
- Organizer
  RIKEN BDR symposium 2021
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16096
[Presentation] Graph-based machine learning reveals rules of spatiotemporal cell interactions in tissues2021
- Author(s)
  Takaki Yamamoto
- Organizer
  RIKEN BDR Retreat 2021
- Data Source
  KAKENHI-PROJECT-19K16096
[Presentation] Collective cell migration of epithelial cells driven by chiral torque generation2021
- Author(s)
  Takaki Yamamoto
- Organizer
  EMBO Workshop Physics of living systems: From molecules to tissues
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16096
[Presentation] Chirality-induced helical self-propulsion of chiral liquid crystal droplets2019
- Author(s)
  Takaki Yamamoto
- Organizer
  Gordon Research Seminar "Designing Mechanics and Dynamics in Soft Matter”
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16096
[Presentation] キラルな液晶液滴のマランゴニ効果駆動の回転運動とその流体場2019
- Author(s)
  山本尚貴
- Organizer
  日本物理学会 2019年秋季大会
- Data Source
  KAKENHI-PROJECT-19K16096
[Presentation] Theoretical model of dynamics of epithelial cells with cellular chiral torque generation2019
- Author(s)
  Takaki Yamamoto
- Organizer
  Gordon Research Conference "Living and Non-Living Soft Matter on the Edge: Out of Equilibrium, Marginal, in Extreme Conditions and at Interfaces”
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16096
[Presentation] Theoretical model of dynamics of epithelial tissue with cellular chirality2019
- Author(s)
  山本尚貴
- Organizer
  第57回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-19K16096
[Presentation] 細胞のキラリティを考慮した上皮細胞組織の運動モデル2019
- Author(s)
  山本尚貴
- Organizer
  日本物理学会 2019年秋季大会
- Data Source
  KAKENHI-PROJECT-19K16096

1. 平岩徹也

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Yamamoto Takaki 山本 尚貴

Research Projects

Research Products

Co-Researchers

Revealing the mechanism of mechanical regulation in minimal multi-cellular units of epithelial tissuesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

細胞が生成するトルクの新規測定手法を用いたキラルな細胞動態の解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Non-monotonic fluidization generated by fluctuating edge tensions in confluent tissues2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Tracheal motile cilia in mice require CAMSAP3 for the formation of central microtubule pair and coordinated beating2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Tracing the origin of hair follicle stem cells2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Cell cycle-dependent active stress drives epithelia remodeling2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Collective cell migration of epithelial cells driven by chiral torque generation2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Non-monotonic fluidization generated by fluctuating edge tensions in confluent tissues2020

Author(s)

Journal Title

Data Source

[Journal Article] Collective cell migration of epithelial cells driven by chiral torque generation2019

Author(s)

Journal Title

Data Source

[Journal Article] Reorientation behavior in the helical motility of light-responsive spiral droplets2019

Author(s)

Journal Title

DOI

Data Source

[Presentation] グラフニューラルネットワークによる細胞間の時空間相互作用の推定2022

Author(s)

Organizer

Data Source

[Presentation] Graph-based machine learning reveals rules of spatiotemporal cell interactions in tissues2022

Author(s)

Organizer

Data Source

[Presentation] Non-monotonic fluidization generated by fluctuating edge tensions in confluent tissues2021

Author(s)

Organizer

Data Source

[Presentation] Graph-based machine learning reveals rules of spatiotemporal cell interactions in tissues2021

Author(s)

Organizer

Data Source

[Presentation] Collective cell migration of epithelial cells driven by chiral torque generation2021

Author(s)

Organizer

Data Source

[Presentation] Chirality-induced helical self-propulsion of chiral liquid crystal droplets2019

Yamamoto Takaki 山本尚貴