Arata Yukinobu 荒田幸信

… Alternative Names

ARATA Yukinobu 荒田幸信

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Researcher Number	40360482
Other IDs	https://orcid.org/0000-0002-8687-4678
Affiliation (Current)	2025: 国立研究開発法人理化学研究所, 生命医科学研究センター, 専任研究員
Affiliation (based on the past Project Information) *help	2018 – 2023: 国立研究開発法人理化学研究所, 開拓研究本部, 専任研究員 2015 – 2017: 国立研究開発法人理化学研究所, 佐甲細胞情報研究室, 研究員 2012 – 2014: 独立行政法人理化学研究所, 佐甲細胞情報研究室, 研究員 2010: The Institute of Physical and Chemical Research, 佐甲細胞情報研究室, 研究員 2008 – 2009: The Institute of Physical and Chemical Research, 細胞運命研究チーム, 研究員
Review Section/Research Field	Principal Investigator Developmental biology / Studies on the Super-Aging Society
Keywords	Principal Investigator 細胞極性 / 数理モデル / １分子イメージング / 1分子イメージング / マイクロデバイス / マイクロ流体デバイス / フラクタル / 寿命 / 定量 / 超長時間計測 … More / Life-log / 高時間分解計測 / 長時間計測 / 力学系 / ライフログ / 時系列解析 / 超長時間撮影 / 老化 / 線虫 / 拡散距離 / アクトミオシン / 拡散解析 / パターン形成 / PAR/aPKCシステム / 細胞骨格 / タンパク質動態 / 精密計測 / 1分子計測 / 数理モデル化 / １分子計測 / PAR / 定量計測 / PAR/aPKC / 発生生物学 / 細胞生物学 / 分子生物学 / PARタンパク質 / 非対称局在 / タンパク質細胞内動態 / 一分子計測 / 方向制御 / 画像解析プログラム Less

動物活動の定量計測と非線形時系列解析による、老化を支配する力学系システムの解明Principal Investigator
- Principal Investigator
  
  荒田幸信
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Challenging Research (Pioneering)
- Review Section
  
  Studies on the Super-Aging Society
- Research Institution
  Institute of Physical and Chemical Research
Single-molecule analyses of PAR polarity proteins in C. elegans embryosPrincipal Investigator
- Principal Investigator
  
  Arata Yukinobu
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Developmental biology
- Research Institution
  Institute of Physical and Chemical Research
Scaling mechanism revealed by single-molecule detection technologies and mathematical modelingPrincipal Investigator
- Principal Investigator
  
  ARATA Yukinobu
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Developmental biology
- Research Institution
  The Institute of Physical and Chemical Research
Directional control of cell polarization revealed by quantitative measurement and mathematical modelingPrincipal Investigator
- Principal Investigator
  
  ARATA Yukinobu
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Developmental biology
- Research Institution
  The Institute of Physical and Chemical Research

All 2024 2023 2022 2021 2020 2017 2016 2015 2013 2012 2010 2009 2008 Other

All Journal Article Presentation

[Journal Article] Comprehensive identification of potentially functional genes for transposon mobility in the C. elegans genome2023
- Author(s)
  Yukinobu Arata, Peter Jurica, Nicholas Parrish, Yasushi Sako
- Journal Title
  
  bioRxiv
  
  Volume: - Pages: 1-1
- DOI
  10.1101/2023.08.08.552548
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K20321
[Journal Article] Insulin signaling shapes fractal scaling of C. elegans behavior2022
- Author(s)
  Arata Yukinobu、Shiga Itsuki、Ikeda Yusaku、Jurica Peter、Kimura Hiroshi、Kiyono Ken、Sako Yasushi
- Journal Title
  
  Scientific Reports
  
  Volume: 12 Issue: 1 Pages: 10481-10481
- DOI
  10.1038/s41598-022-13022-6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K20321, KAKENHI-PROJECT-19H05647
[Journal Article] Insulin signaling shapes fractal scaling of C. elegans benavior2022
- Author(s)
  Yukinobu Arata, Itsuki Shiga, Yusaku Ikeda, Peter Jurica, Hiroshi Kimura, Ken Kiyono, Yasushi Sako
- Journal Title
  
  Scientific Reports
  
  Volume: -
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K20321
[Journal Article] NEW FINDING OP50, a bacterial strain conventionally used as food for laboratory maintenance of C. elegans, is a biofilm formation defective mutant2020
- Author(s)
  Yukinobu Arata, Taku Oshima, Yusaku Ikeda, Hiroshi Kimura and Yasushi Sako
- Journal Title
  
  microPublication Biology
  
  Volume: - Pages: 1-5
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K20321
[Journal Article] 動物の老化研究における定量的アプローチ2020
- Author(s)
  荒田幸信
- Journal Title
  
  月刊「細胞」
  
  Volume: 52 Pages: 35-40
- Data Source
  KAKENHI-PROJECT-20K20321
[Journal Article] C. elegans episodic swimming is driven by multifractal kinetics2020
- Author(s)
  Yusaku Ikeda, Peter Jurica, Hiroshi Kimura, Hiroaki Takagi, Zbigniew R. Struzik, Ken Kiyono, Yukinobu Arata & Yasushi Sako
- Journal Title
  
  Scientific Reports
  
  Volume: 10 Issue: 1 Pages: 1-17
- DOI
  10.1038/s41598-020-70319-0
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K20321
[Journal Article] OP50, a bacterial strain conventionally used as food for laboratory maintenance of C. elegans, is a biofilm formation defective mutant2020
- Author(s)
  Yukinobu Arata, Taku Oshima, Yusaku Ikeda, Hiroshi Kimura and Yasushi Sako
- Journal Title
  
  microPublication Biology
  
  Volume: 1 Pages: 1-5
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K20321
[Journal Article] Cortical polarity of the RING protein PAR-2 is maintained by exchange rate kinetics at the cortical-cytoplasm boundary2016
- Author(s)
  Arata, Y., Hiroshima, M., Pack, C.-G., Ramanujam, R., Motegi, F., Nakazato, K., Wiseman, P. W., Sawa, H., Kobayashi, T. J., Brandao, H. B., Shibata, T., and Sako, Y.
- Journal Title
  
  Cell Rep.
  
  Volume: 16 Issue: 8 Pages: 2156-2168
- DOI
  10.1016/j.celrep.2016.07.047
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-16H00788, KAKENHI-PROJECT-15H02394, KAKENHI-PROJECT-15KT0087, KAKENHI-PROJECT-15K07090
[Journal Article] Power law relationship between cell cycle duration and cell volume in the early embryonic development of Caenorhabditis elegans2015
- Author(s)
  Arata, Y., Takagi, H., Sako, Y., and Sawa. H.
- Journal Title
  
  Frontiers in Physiology
  
  Volume: 28 Pages: 529-529
- DOI
  10.3389/fphys.2014.00529
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22127005, KAKENHI-PROJECT-24770221, KAKENHI-PROJECT-25600051, KAKENHI-PROJECT-15K14514
[Journal Article] Extracellular control of PAR protein localization during asymmetric cell division in the C.elegans embryo.2010
- Author(s)
  Arata Y, Lee JY, Goldstein B, Sawa H.
- Journal Title
  
  Development.
  
  Volume: 137 Pages: 3337-45
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20770187
[Journal Article] Extracellular control of PAR protein localization during asymmetric cell division in the C. elegans embryo2010
- Author(s)
  Arata Yukinobu, Lee Jen-Yi, Goldstein Bob, Sawa Hitoshi
- Journal Title
  
  Development
- Data Source
  KAKENHI-PROJECT-20770187
[Presentation] Bridging computational modeling and experimental biology: Introducing the new motion tracker for capturing individual C. elegans motions at population scale and at lifespan time-scale2024
- Author(s)
  Yukinobu Arata
- Organizer
  7th Nobel Turing Challenge
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K20321
[Presentation] 自作！線虫の個体解像度・超多個体・寿命時間スケールのmotion tracker, nemaLifelogger2024
- Author(s)
  荒田幸信
- Organizer
  第11回定量生物の会
- Data Source
  KAKENHI-PROJECT-20K20321
[Presentation] 1000匹以上の線虫の行動を一生の間ビデオ撮影するnemaLife-loggerにより同定した老化に伴う行動速度の指数減衰とトランスポゾン駆動老化仮説の実験検証2022
- Author(s)
  荒田幸信
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-20K20321
[Presentation] 動物の老化に伴う活動速度の指数減衰とトランスポゾン駆動老化仮説の検証2022
- Author(s)
  荒田幸信
- Organizer
  第60回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-20K20321
[Presentation] Scale-free behaviors of C. elegans is shaped by Insulin signaling2021
- Author(s)
  荒田幸信
- Organizer
  生物物理学会年会
- Data Source
  KAKENHI-PROJECT-20K20321
[Presentation] Life-logger, １０００匹の線虫の寿命時間スケールでの行動動態を計測するためのビデオ撮影装置の開発2020
- Author(s)
  荒田幸信
- Organizer
  生物物理学会年会
- Data Source
  KAKENHI-PROJECT-20K20321
[Presentation] 高時間分解・長時間撮影による、線虫C.elegansの原腸貫入運動の解析2017
- Author(s)
  荒田幸信、新土優樹、高木拓明、佐甲靖志
- Organizer
  生物物理学会年会
- Data Source
  KAKENHI-PROJECT-15K07090
[Presentation] Multi-time scale cortical dynamics during gastrulation in C. elegans embryos2017
- Author(s)
  Yukinobu Arata, Yuki Shindo, Hiroaki Takagi, and Yasushi Sako
- Organizer
  International C. elegans meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K07090
[Presentation] ROXSによってmCherryの安定性と明るさが向上する2016
- Author(s)
  荒田幸信、佐甲靖志
- Organizer
  日本生物物理学会
- Place of Presentation
  つくば国際会議場（茨城県・つくば市）
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-15K07090
[Presentation] Polarity Maintenance by the Exchange Rate Control of RING Protein PAR-2 at the Cortical-cytoplasm Boundary2015
- Author(s)
  荒田　幸信
- Organizer
  日本生物物理学会
- Place of Presentation
  金沢大学
- Year and Date
  2015-09-13
- Data Source
  KAKENHI-PROJECT-15K07090
[Presentation] Developmental biology meets single-molecule detection technologies;Measurement-based mathematical modeling of PAR protein localization in C. elegans embryos2013
- Author(s)
  荒田幸信
- Organizer
  定量生物学の会　第六回
- Place of Presentation
  大阪大学
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] 動物の発生における、細胞極性化機構の１分子定量計測と数理モデル化2013
- Author(s)
  荒田幸信
- Organizer
  理研シンポジウム「細胞システムの動態と論理IV」
- Place of Presentation
  埼玉県和光市
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] 動物の発生におけるPAR/aPKC細胞極性システムの計測に基づいた数理モデル化2013
- Author(s)
  荒田幸信
- Organizer
  第５１回生物物理学会年会
- Place of Presentation
  国立京都国際会館
- Invited
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] C. elegans meets single-molecule detection technologies; The embryonic cell polarity system is driven by state transition of PAR-2 protein molecules.2013
- Author(s)
  Yukinobu Arata
- Organizer
  19th International C. elegans Meeting
- Place of Presentation
  UCLA
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] 受精卵から個体へ：発生における細胞分化と細胞極性2012
- Author(s)
  荒田幸信
- Organizer
  最先端光計測とライフサイエンスの近未来ーバイオラマン2012－
- Place of Presentation
  埼玉県和光市
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] Quantitative measurement and mathematical modeling of polarity-protein PAR-2 in C. elegans embryos2012
- Author(s)
  荒田幸信
- Organizer
  生物物理学会
- Place of Presentation
  愛知県名古屋市
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] PARタンパク質依存的な細胞極性の方向制御2010
- Author(s)
  荒田幸信
- Organizer
  第48回日本生物物理学会年会
- Place of Presentation
  宮城県仙台市(東北大学)
- Year and Date
  2010-09-16
- Data Source
  KAKENHI-PROJECT-20770187
[Presentation] Directional control of PAR-dependent polarization in C.elegans2009
- Author(s)
  荒田幸信
- Organizer
  17th international C.elegans meeting
- Place of Presentation
  University of California, Los Angeles, California
- Data Source
  KAKENHI-PROJECT-20770187
[Presentation] Directional control of PAR-dependent polarization in C.elegans2009
- Author(s)
  荒田幸信
- Organizer
  発生生物学会年会
- Place of Presentation
  新潟コンベンションセンター(朱鷺メッセ)
- Data Source
  KAKENHI-PROJECT-20770187
[Presentation] 細胞単離・操作法を用いてPARタンパク質依存的な細胞極性を細胞外から方向付けする2009
- Author(s)
  荒田幸信
- Organizer
  日本生化学会大会
- Place of Presentation
  神戸ポートアイランド
- Data Source
  KAKENHI-PROJECT-20770187
[Presentation] 線虫の初期胚において、PAR依存的な細胞の極性化はMES-1/SRCシグナルによって方向付けされる2008
- Author(s)
  荒田幸信
- Organizer
  第31回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド
- Data Source
  KAKENHI-PROJECT-20770187
[Presentation] PAE-dependent polarization is oriented by an extracellular signal MES-1 in C. elegans2008
- Author(s)
  荒田幸信
- Organizer
  第60回日本細胞生物学会大会
- Place of Presentation
  パシフィコ横浜
- Data Source
  KAKENHI-PROJECT-20770187
[Presentation] PAE-dependent polarization is oriented by an extracellular signal MES-1 in C. elegans2008
- Author(s)
  荒田幸信
- Organizer
  C. elegans Development and Evolution meeting
- Place of Presentation
  ウィスコンシン大学
- Data Source
  KAKENHI-PROJECT-20770187
[Presentation] Stable maintenance of the cortical PAR-2 asymmetry by the cytoplasmic diffusion in the one-cell C. elegans embryo
- Author(s)
  荒田幸信、廣島通夫、白燦基、小林徹也、柴田達夫、佐甲靖志
- Organizer
  第52回日本生物物理学会年会（BSJ2014）
- Place of Presentation
  札幌
- Year and Date
  2014-09-25 – 2014-09-27
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] Measurement-Based Mathematical Modeling of PAR Protein Localization in C. elegans embryos
- Author(s)
  荒田幸信
- Organizer
  「理論と実験」研究会2013
- Place of Presentation
  広島大学
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] 生細胞内タンパク質動態の計測に基づいた、細胞現象の数理モデル化
- Author(s)
  荒田幸信
- Organizer
  個別セミナー（東海大学木村研究室）
- Place of Presentation
  東海大学木村研究室
- Invited
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] Measurement-based mathematical modeling of PAR-2 protein localization in C. elegans embryo
- Author(s)
  荒田幸信、廣島通夫、白燦基、小林徹也、柴田達夫、佐甲靖志
- Organizer
  C. elegans development, cell biology and gene expression meeting in association with The 6th Asia-Pacific C. elegans meeting
- Place of Presentation
  奈良
- Year and Date
  2014-07-15 – 2014-07-19
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] PAR polarity protein dynamics in the presence of ATP production inhibitor Azide in C. elegans embryos
- Author(s)
  荒田幸信
- Organizer
  「理論と実験」研究会2014
- Place of Presentation
  広島
- Year and Date
  2014-10-09 – 2014-10-10
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] Developmental biology meets single-molecule detection technologies;Measurement-based mathematical modeling of PAR protein localization in C. elegans embryos
- Author(s)
  荒田幸信
- Organizer
  個別セミナー（理研CDBセミナー）
- Place of Presentation
  理化学研究所神戸研
- Invited
- Data Source
  KAKENHI-PROJECT-24770221
[Presentation] 動物初期胚における極性タンパク質の局在分布の“Steepness”
- Author(s)
  荒田幸信
- Organizer
  定量生物学の会
- Place of Presentation
  福岡
- Year and Date
  2015-01-11 – 2015-01-12
- Invited
- Data Source
  KAKENHI-PROJECT-24770221

1. 高木拓明 (10444514)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
2. 澤斉

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
3. 佐甲靖志

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Arata Yukinobu 荒田 幸信

ARATA Yukinobu 荒田 幸信

Research Projects

Research Products

Co-Researchers

動物活動の定量計測と非線形時系列解析による、老化を支配する力学系システムの解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Single-molecule analyses of PAR polarity proteins in C. elegans embryosPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Scaling mechanism revealed by single-molecule detection technologies and mathematical modelingPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Directional control of cell polarization revealed by quantitative measurement and mathematical modelingPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Comprehensive identification of potentially functional genes for transposon mobility in the C. elegans genome2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Insulin signaling shapes fractal scaling of C. elegans behavior2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Insulin signaling shapes fractal scaling of C. elegans benavior2022

Author(s)

Journal Title

Data Source

[Journal Article] NEW FINDING OP50, a bacterial strain conventionally used as food for laboratory maintenance of C. elegans, is a biofilm formation defective mutant2020

Author(s)

Journal Title

Data Source

[Journal Article] 動物の老化研究における定量的アプローチ2020

Author(s)

Journal Title

Data Source

[Journal Article] C. elegans episodic swimming is driven by multifractal kinetics2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] OP50, a bacterial strain conventionally used as food for laboratory maintenance of C. elegans, is a biofilm formation defective mutant2020

Author(s)

Journal Title

Data Source

[Journal Article] Cortical polarity of the RING protein PAR-2 is maintained by exchange rate kinetics at the cortical-cytoplasm boundary2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Power law relationship between cell cycle duration and cell volume in the early embryonic development of Caenorhabditis elegans2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Extracellular control of PAR protein localization during asymmetric cell division in the C.elegans embryo.2010

Author(s)

Journal Title

Data Source

[Journal Article] Extracellular control of PAR protein localization during asymmetric cell division in the C. elegans embryo2010

Author(s)

Journal Title

Data Source

[Presentation] Bridging computational modeling and experimental biology: Introducing the new motion tracker for capturing individual C. elegans motions at population scale and at lifespan time-scale2024

Author(s)

Arata Yukinobu 荒田幸信

ARATA Yukinobu 荒田幸信