Shimizu Akifumi 清水顕史

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shimizu akifumi 清水顕史

SHIMIZU Akifumi 清水顕史

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Researcher Number	40409082
Other IDs
Affiliation (Current)	2025: 滋賀県立大学, 環境科学部, 准教授
Affiliation (based on the past Project Information) *help	2018 – 2024: 滋賀県立大学, 環境科学部, 准教授 2014 – 2016: 滋賀県立大学, 環境科学部, 准教授 2012: 滋賀県立大学, 環境科学部, 准教授 2007 – 2012: The University of Shiga Prefecture, 環境科学部, 助教 2009: The University of Shiga Prefecture, 環境科学部, 助教
Review Section/Research Field	Principal Investigator Basic Section 39010:Science in plant genetics and breeding-related / Breeding science / Science in genetics and breeding Except Principal Investigator 基礎ゲノム科学
Keywords	Principal Investigator 遺伝育種学 / 栄養ストレス耐性 / ストレス耐性 / 遺伝解析 / 深層学習 / 遺伝育種科学 / 植物栄養学 / 全ゲノム関連解析 / 環境ストレス / 収量関連形質 … More / GWAS / 栄養ストレス / 遺伝子単離 / バイオレメディエーション / 抵抗性・耐性 / イネ / QTL解析 / ホスファターゼ / 環境修復 / リン欠乏 / ストレス応答 / 環境保全型農業 / 遺伝 / 植物育種 … More Except Principal Investigator バイオインフォマティクス / 遺伝子発現 / 遺伝子 / ゲノム / 生体生命情報学 Less

イネRILの高密度遺伝子型情報を利用した深層学習によるメンデル遺伝形質値の探索Principal Investigator
- Principal Investigator
  
  清水顕史
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 39010:Science in plant genetics and breeding-related
- Research Institution
  The University of Shiga Prefecture
Gene survey for sustainable rice production with low-fertilizer and establishment of a new phenotyping system applying deep learning.Principal Investigator
- Principal Investigator
  
  Shimizu Akifumi
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 39010:Science in plant genetics and breeding-related
- Research Institution
  The University of Shiga Prefecture
Study of rice genetic loci and their interactions, which contributes to the breakthrough of the limit of yield at low-fertilizer environment.Principal Investigator
- Principal Investigator
  
  Shimizu Akifumi
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 39010:Science in plant genetics and breeding-related
- Research Institution
  The University of Shiga Prefecture
Genome wide analysis for breeding of tolerant rice cultivars to unfertilized paddy field.Principal Investigator
- Principal Investigator
  
  shimizu akifumi
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Science in genetics and breeding
- Research Institution
  The University of Shiga Prefecture
Isolation and functional analysis of acid soil tolerance genes in rice, which are useful for genome based breeding of environmentally sustainable varieties.Principal Investigator
- Principal Investigator
  
  SHIMIZU Akifumi
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Breeding science
- Research Institution
  The University of Shiga Prefecture
大規模EST情報からの遺伝子発現パターンを利用した有用遺伝子の探索手法の開発
- Principal Investigator
  
  矢野健太郎
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Exploratory Research
- Research Field
  
  基礎ゲノム科学
- Research Institution
  Meiji University
  The University of Tokyo
Positional cloning of phosphorus-deficiency-responsive traits in rice and its functional analyses for agriculture of environmental conservation typePrincipal Investigator
- Principal Investigator
  
  SHIMIZU Akifumi
- Project Period (FY)
  2007 – 2009
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Breeding science
- Research Institution
  The University of Shiga Prefecture

All 2022 2019 2017 2016 2012 2011 2010 2009 2008 2007 Other

All Journal Article Presentation Book Patent

[Book] Genome and transcriptome analyses for acid tolerance in rice : phosphorous deficiency and low pH stress.(Development of New Bioremediation Systems of Acid Sulfate Soil for Agriculture and Forestry.)(S.Sasaki (eds)) ISBN 978-4-87974-608-52008
- Author(s)
  Shimizu A., Kato K., Komatsu A., Ikehashi H.
- Publisher
  SHOUKADOH Book Sellers, Kyoto
- Data Source
  KAKENHI-PROJECT-19780006
[Book] Development of New Bioremediation Systems of Acid Sulfate Soil for Agriculture and Forestry. (S. Sasaki (eds), Genome and transcriptome analyses for acid tolerance in rice: phosphorous deficiency and low pH stress.)2008
- Author(s)
  Shimizu A., Kato K., Komatsu A., Ikehashi H.
- Publisher
  SHOUKADOH Book Sellers
- Data Source
  KAKENHI-PROJECT-19780006
[Journal Article] Discovery of high-confidence single nucleotide polymorphisms from large-scale de novo analysis of leaf transcripts of Aegilops tauschii, a wild wheat progenitor2012
- Author(s)
  Iehisa JCM, Shimizu A, Sato K, Nasuda S, Takumi S
- Journal Title
  
  DNA Research
  
  Volume: 19 Issue: 6 Pages: 487-497
- DOI
  10.1093/dnares/dss028
- NAID
  120005398237
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21380005, KAKENHI-PROJECT-22580010, KAKENHI-PROJECT-23380007
[Journal Article] Suppression of a NAC-Like Transcription Factor Gene Improves Boron- Toxicity Tolerance in Rice2011
- Author(s)
  Ochiai K, Shimizu A, Okumoto Y, Fujiwara T, Mato, T.
- Journal Title
  
  Plant Physiol
  
  Volume: 156(3) Issue: 3 Pages: 1457-1463
- DOI
  10.1104/pp.110.171470
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21228002, KAKENHI-PROJECT-21380047, KAKENHI-PROJECT-22380030, KAKENHI-PROJECT-22580010
[Journal Article] Suppression ofa NAC-like transcription factor gene improves boron-toxicity tolerance in rice(Oryza sativa L.)2011
- Author(s)
  Ochiai K, ShimizuA., OkumotoY, Fujiwara T, Matoh T.
- Journal Title
  
  Plant Physiology
  
  Volume: 156 Pages: 1457-1463
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22580010
[Journal Article] Rapid construction of a high-density rice linkage map by High Efficiency Genome Scanning (HEGS) system.2009
- Author(s)
  Shimizu A., Kawasaki S.
- Journal Title
  
  Rice Science 16
  
  Pages: 247-251
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19780006
[Journal Article] QTL analysis of genetic tolerance to iron-toxicity in rice (Oryza sativa L.) by quantification of bronzing score.2009
- Author(s)
  Shimizu, Akifumi
- Journal Title
  
  Journal of New Seeds 10
  
  Pages: 171-179
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19780006
[Journal Article] Rapid canstruction of a high-density rice linkage map by High Efficiency Genome Scanning (HEGS) system.2009
- Author(s)
  Shimizu, A., Kawasaki S.
- Journal Title
  
  Rice Science 16
  
  Pages: 247-251
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19780006
[Journal Article] QTL analysis of genetic tolerance to iron-toxicity in rice (Oryza sativa L. ) by quantification of bronzing score.2009
- Author(s)
  Shimizu A.
- Journal Title
  
  Journal of New Seeds 10
  
  Pages: 171-179
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19780006
[Journal Article] QTL analysis of genetic tolerance to iron-toxicity in rice (Oryza sativa L.) by quantification of bronzing score.2009
- Author(s)
  Shimizu A.
- Journal Title
  
  Journal of New Seeds 10
  
  Pages: 171-179
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19780006
[Journal Article] Genetic analysis of root elongation induced by phosphorus deficiency in rice (Oryza sativa L. ): fine QTL mapping and multivariate analysis of related traits2008
- Author(s)
  Shimizu A., Kato K., Komatsu A., Motomura K., Ikehashi H.
- Journal Title
  
  Theoretical and Applied Genetics 117
  
  Pages: 987-996
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19780006
[Journal Article] Genome and transcriptome analyses for acid tolerance in rice:phosp horous deficiency and low pH stress.2008
- Author(s)
  Shimizu, A.
- Journal Title
  
  Proceedings of the Final International Meeting for 21th Century Center for Excellence (COE) Program "Development of New Bioremediation Systems of Acid Sulfate Soil for Agriculture and Forestry"
  
  Pages: 25-28
- Data Source
  KAKENHI-PROJECT-19780006
[Journal Article] Genetic analysis of root elongation induced by phosphorus deficiency in rice (Oryza sativa L.): fine QTL mapping and multivariate analysis of related traits2008
- Author(s)
  Akifumi Shimizu
- Journal Title
  
  Theoretical and Applied Genetics 117
  
  Pages: 987-996
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19780006
[Journal Article] Genetic analysis of root elongation induced by phosphorus deficiency in rice (Oryza sativa L.) : fine QTL mapping and multivariate analysis of related traits2008
- Author(s)
  Shimizu A., Kato K., Komatsu A., Motomura K., Ikehashi H.
- Journal Title
  
  Theoretical and Applied Genetics 117
  
  Pages: 987-996
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19780006
[Patent] 特許権2009
- Inventor(s)
  矢野健太郎, 清水顕史
- Industrial Property Rights Holder
  明治大学, 滋賀県立大学
- Industrial Property Number
  2009-063273
- Filing Date
  2009-03-16
- Data Source
  KAKENHI-PROJECT-19651084
[Presentation] ナノポアMinION MK1Cを用いたイネのde novo トランスクリプトーム解析例2022
- Author(s)
  松田真輝,　清水顕史
- Organizer
  近畿作物・育種研究会
- Data Source
  KAKENHI-PROJECT-21K05529
[Presentation] リン無施肥水田で栽培したイネの、収量関連形質のゲノム解析2019
- Author(s)
  橋本康史, 山崎将紀, 清水顕史
- Organizer
  日本育種学会
- Data Source
  KAKENHI-PROJECT-18K05577
[Presentation] 無肥料水田で栽培したイネ穂数の遺伝解析2017
- Author(s)
  藤田楓加, 橋本康史, 山崎将紀, 清水顕史
- Organizer
  日本育種学会
- Place of Presentation
  名古屋大学
- Year and Date
  2017-03-28
- Data Source
  KAKENHI-PROJECT-26450009
[Presentation] 連続無施肥水田を利用した、イネ収量形質の全ゲノム関連解析2016
- Author(s)
  清水顕史
- Organizer
  日本土壌肥料学会
- Place of Presentation
  佐賀大学
- Data Source
  KAKENHI-PROJECT-26450009
[Presentation] リン欠乏ストレス下におけるイネ葉身中のリン再利用22010
- Author(s)
  片山敬仁、小川恵未、植川英明、清水顕史、長谷川博、落合久美子、間藤徹、
- Organizer
  日本育種学会
- Place of Presentation
  秋田県立大学
- Year and Date
  2010-09-24
- Data Source
  KAKENHI-PROJECT-22580010
[Presentation] イネ根の Iron-plaque 非形成変異体を用いた、mPing 転移断片の塩基配列2010
- Author(s)
  松本公佑、西村悠希、清水顕史、長谷川博、奥本裕、
- Organizer
  日本育種学会
- Place of Presentation
  秋田県立大学
- Year and Date
  2010-09-24
- Data Source
  KAKENHI-PROJECT-22580010
[Presentation] イネのリン欠乏ストレス耐性・低pH耐性のQTL解析と育種への展望2009
- Author(s)
  清水顕史
- Organizer
  日本植物細胞分子生物学会
- Place of Presentation
  日本大学生物資源科学部(神奈川県)
- Year and Date
  2009-07-31
- Data Source
  KAKENHI-PROJECT-19780006
[Presentation] リン欠乏ストレス下におけるイネ葉身中のリン再利用2009
- Author(s)
  清水顕史, ら
- Organizer
  日本育種学会
- Place of Presentation
  つくば国際会議場(茨城県)
- Year and Date
  2009-03-28
- Data Source
  KAKENHI-PROJECT-19780006
[Presentation] リン欠乏ストレス下におけるイネ葉身中のリン再利用2009
- Author(s)
  清水顕史
- Organizer
  日本育種学会
- Place of Presentation
  つくば国際会議場
- Year and Date
  2009-03-28
- Data Source
  KAKENHI-PROJECT-19780006
[Presentation] グラフィカルモデルによる低リン・ストレス関連形質の多変量解析2008
- Author(s)
  清水顕史
- Organizer
  日本育種学会
- Place of Presentation
  滋賀県立大学(滋賀県)
- Year and Date
  2008-10-11
- Data Source
  KAKENHI-PROJECT-19780006
[Presentation] グラフィカルモデルによる低リン・ストレス関連形質の多変量解析2008
- Author(s)
  清水顕史
- Organizer
  日本育種学会
- Place of Presentation
  滋賀県立大学
- Year and Date
  2008-10-11
- Data Source
  KAKENHI-PROJECT-19780006
[Presentation] イネのリン酸欠乏によって誘導される根伸長3.精密QTLマッピングと発現遺伝子解析2007
- Author(s)
  清水顕史, ら
- Organizer
  日本育種学会
- Place of Presentation
  山形大学(山形県)
- Year and Date
  2007-09-22
- Data Source
  KAKENHI-PROJECT-19780006
[Presentation] イネのリン酸欠乏によって誘導される根伸長3. 精密QTLマッピングと発現遺伝子解析2007
- Author(s)
  清水顕史, ら
- Organizer
  日本育種学会
- Place of Presentation
  山形大学(山形県)
- Year and Date
  2007-09-22
- Data Source
  KAKENHI-PROJECT-19780006
[Presentation] イネのリン酸欠乏によって誘導される根伸長3.精密QTLマッピングと発現遺伝子解析2007
- Author(s)
  清水顕史
- Organizer
  日本育種学会
- Place of Presentation
  山形大学
- Year and Date
  2007-09-22
- Data Source
  KAKENHI-PROJECT-19780006
[Presentation] 日本イネ集団を用いた、低リン耐性関連形質のゲノムワイド関連解析1. 根分泌物質による不可給態リンの可溶化
- Author(s)
  田端友樹, 藤田楓加, 山崎将紀, 清水顕史
- Organizer
  日本育種学会
- Place of Presentation
  玉川大学
- Year and Date
  2015-03-21 – 2015-03-22
- Data Source
  KAKENHI-PROJECT-26450009

1. 矢野健太郎 (00446543)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. 山根京子 (00405359)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 山崎将紀 (00432550)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
4. 藤原徹

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
5. 宅見薫雄

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Shimizu Akifumi 清水 顕史

shimizu akifumi 清水 顕史

SHIMIZU Akifumi 清水 顕史

Research Projects

Research Products

Co-Researchers

イネRILの高密度遺伝子型情報を利用した深層学習によるメンデル遺伝形質値の探索Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Gene survey for sustainable rice production with low-fertilizer and establishment of a new phenotyping system applying deep learning.Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Study of rice genetic loci and their interactions, which contributes to the breakthrough of the limit of yield at low-fertilizer environment.Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Genome wide analysis for breeding of tolerant rice cultivars to unfertilized paddy field.Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Isolation and functional analysis of acid soil tolerance genes in rice, which are useful for genome based breeding of environmentally sustainable varieties.Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

大規模EST情報からの遺伝子発現パターンを利用した有用遺伝子の探索手法の開発

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Positional cloning of phosphorus-deficiency-responsive traits in rice and its functional analyses for agriculture of environmental conservation typePrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Genome and transcriptome analyses for acid tolerance in rice : phosphorous deficiency and low pH stress.(Development of New Bioremediation Systems of Acid Sulfate Soil for Agriculture and Forestry.)(S.Sasaki (eds)) ISBN 978-4-87974-608-52008

Author(s)

Publisher

Data Source

[Book] Development of New Bioremediation Systems of Acid Sulfate Soil for Agriculture and Forestry. (S. Sasaki (eds), Genome and transcriptome analyses for acid tolerance in rice: phosphorous deficiency and low pH stress.)2008

Author(s)

Publisher

Data Source

[Journal Article] Discovery of high-confidence single nucleotide polymorphisms from large-scale de novo analysis of leaf transcripts of Aegilops tauschii, a wild wheat progenitor2012

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Suppression of a NAC-Like Transcription Factor Gene Improves Boron- Toxicity Tolerance in Rice2011

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Suppression ofa NAC-like transcription factor gene improves boron-toxicity tolerance in rice(Oryza sativa L.)2011

Author(s)

Journal Title

Data Source

[Journal Article] Rapid construction of a high-density rice linkage map by High Efficiency Genome Scanning (HEGS) system.2009

Author(s)

Journal Title

Data Source

[Journal Article] QTL analysis of genetic tolerance to iron-toxicity in rice (Oryza sativa L.) by quantification of bronzing score.2009

Author(s)

Journal Title

Data Source

[Journal Article] Rapid canstruction of a high-density rice linkage map by High Efficiency Genome Scanning (HEGS) system.2009

Shimizu Akifumi 清水顕史

shimizu akifumi 清水顕史

SHIMIZU Akifumi 清水顕史