Kameda Tomoshi 亀田倫史

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KAMEDA Tomoshi 亀田倫史

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Researcher Number	40415774
Other IDs	https://orcid.org/0000-0001-9508-5366
Affiliation (Current)	2025: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 上級主任研究員
Affiliation (based on the past Project Information) *help	2022 – 2024: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 上級主任研究員 2016 – 2022: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 主任研究員 2016: 国立研究開発法人産業技術総合研究所, 創薬基盤研究部門, 主任研究員 2015: 国立研究開発法人産業技術総合研究所, 人工知能研究センター, 主任研究員 2014: 国立研究開発法人産業技術総合研究所, 創薬基盤研究部門, 主任研究員 … More 2013: 独立行政法人産業技術総合研究所, ゲノム情報研究センター, 研究員 2012: 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 主任研究員 2011: 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 研究員 Less
Review Section/Research Field	Principal Investigator Medium-sized Section 62:Applied informatics and related fields / Bioinformatics/Life informatics Except Principal Investigator Basic Section 28010:Nanometer-scale chemistry-related / Medium-sized Section 63:Environmental analyses and evaluation and related fields / Basic Section 47020:Pharmaceutical analytical chemistry and physicochemistry-related / Basic Section 58020:Hygiene and public health-related: including laboratory approach / Medium-sized Section 27:Chemical engineering and related fields / Medium-sized Section 28:Nano/micro science and related fields / System genome science / Life / Health / Medical informatics
Keywords	Principal Investigator シュードウイルス / カロリメトリー / スパイク蛋白質 / 進化予測 / 分子動力学シミュレーション / 機械学習 / 新型コロナウイルス / 分子動力学 / 分子動力学(MD) / 立体構造予測 / RNA / 蛋白質 … More Except Principal Investigator … More タンパク質 / タンパク質コロナ / ナノ粒子 / 分子動力学計算 / 酸化還元 / カーボンナノチューブ / 分子動力学 / RNA2次構造 / RNA２次構造 / マイクロプラスチック / ナノプラスチック / 脂質膜 / ドラッグデリバリ―システム / 膜透過 / 環状ペプチド / DDS / 膜透過ペプチド / 食品成分 / がん腫瘍学 / がん予防学 / 天然化合物 / 分子動力学シミュレーション / ケモプロテオミクス / ペリリルアルコール / セサミノール / がん予防 / 抗体 / 機械学習 / 進化分子工学 / リフォールディング / エピトランスクリプトーム解析 / エピとランスクリプトーム解析 / ＲＮＡ2次構造 / エヒトランスプリクトーム / エネルギーパラメタ / バイオインフォマティクス / エピトランスクリプトーム / 修飾塩基 / RNA立体構造 / RNA・タンパク質相互作用 / RNAタンパク質相互作用 / ドッキング計算 / RNA-タンパク質相互作用 Less

Protein corona formation of nanoplastics
- Principal Investigator
  
  平野篤
- Project Period (FY)
  2024 – 2029
- Research Category
  
  Grant-in-Aid for Challenging Research (Pioneering)
- Review Section
  
  Medium-sized Section 63:Environmental analyses and evaluation and related fields
- Research Institution
  National Institute of Advanced Industrial Science and Technology
脂質二重膜透過アッセイ系と人工知能による膜透過性環状ペプチドの合理的設計
- Principal Investigator
  
  池田恵介
- Project Period (FY)
  2023 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 47020:Pharmaceutical analytical chemistry and physicochemistry-related
- Research Institution
  University of Toyama
Predicting corona virus evolution by combining molecular dynamics simulation and machine learning.Principal Investigator
- Principal Investigator
  
  亀田倫史
- Project Period (FY)
  2022 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  National Institute of Advanced Industrial Science and Technology
Chemoproteomics and molecular dynamics simulation-based drug discovery platforms for chemoprevention
- Principal Investigator
  
  渡邉元樹
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 58020:Hygiene and public health-related: including laboratory approach
- Research Institution
  Kyoto Prefectural University of Medicine
Mechanism of oxidative stress cooperatively induced by nanoparticles and transition metal
- Principal Investigator
  
  平野篤
- Project Period (FY)
  2022 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 28010:Nanometer-scale chemistry-related
- Research Institution
  National Institute of Advanced Industrial Science and Technology
Evolutionary Molecular Engineering Guided by Machine Learning: Smart Maturation Process for Cancer Therapeutic Antibodies
- Principal Investigator
  
  Umetsu Mitsuo
- Project Period (FY)
  2020 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 27:Chemical engineering and related fields
- Research Institution
  Tohoku University
Highly efficient refolding of proteins using carbon nanotubes
- Principal Investigator
  
  Hirano Atsushi
- Project Period (FY)
  2018 – 2019
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 28:Nano/micro science and related fields
- Research Institution
  National Institute of Advanced Industrial Science and Technology
A study of protein corona formation using purified carbon nanotubes
- Principal Investigator
  
  Hirano Atsushi
- Project Period (FY)
  2018 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 28010:Nanometer-scale chemistry-related
- Research Institution
  National Institute of Advanced Industrial Science and Technology
RNA informatics for epi-transcriptome analysis
- Principal Investigator
  
  Asai Kiyoshi
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  System genome science
- Research Institution
  The University of Tokyo
Comprehensive prediction of RNA-protein interactinos
- Principal Investigator
  
  Asai Kiyoshi
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  The University of Tokyo
Tertiary structure prediction by multi-scale simulationPrincipal Investigator
- Principal Investigator
  
  KAMEDA Tomoshi
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  National Institute of Advanced Industrial Science and Technology

All 2024 2023 2022 2021 2016 2015 2014 2013 2012 2011 Other

All Journal Article Presentation

[Journal Article] Coenzyme corona formation on carbon nanotubes leads to disruption of the redox balance in metabolic reactions2023
- Author(s)
  Hirano Atsushi、Kameda Tomoshi、Wada Momoyo、Tanaka Takeshi、Kataura Hiromichi
- Journal Title
  
  Nanoscale
  
  Volume: 15 Issue: 5 Pages: 2340-2353
- DOI
  10.1039/d2nr05213j
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20H05668, KAKENHI-PROJECT-23K23163
[Journal Article] Solubilization of Carbon Nanobelts in Aqueous Solutions: Optical and Colloidal Properties2023
- Author(s)
  Hirano Atsushi、Kameda Tomoshi、Wada Momoyo、Tanaka Takeshi、Kataura Hiromichi
- Journal Title
  
  Nano Letters
  
  Volume: 23 Issue: 23 Pages: 11167-11173
- DOI
  10.1021/acs.nanolett.3c03673
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20H05668, KAKENHI-PROJECT-23K23163
[Journal Article] Fine-Tuning and Enhancement of pH-Dependent Membrane Permeation of Cyclic Peptides by Utilizing Noncanonical Amino Acids with Extended Side Chains2023
- Author(s)
  Matsuda Motomi、Ikeda Keisuke、Kameda Tomoshi、Nakao Hiroyuki、Nakano Minoru
- Journal Title
  
  Journal of Medicinal Chemistry
  
  Volume: 66 Issue: 10 Pages: 7054-7062
- DOI
  10.1021/acs.jmedchem.3c00628
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K14144, KAKENHI-PROJECT-23K23461, KAKENHI-PROJECT-23K27311
[Journal Article] Protein’s Protein Corona: Nanoscale Size Evolution of Human Immunoglobulin G Aggregates Induced by Serum Albumin2022
- Author(s)
  Nakayama Tomohito、Kobayashi Kaito、Kameda Tomoshi、Hase Muneaki、Hirano Atsushi
- Journal Title
  
  ACS Applied Materials & Interfaces
  
  Volume: 14 Issue: 29 Pages: 32937-32947
- DOI
  10.1021/acsami.2c08271
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H01809
[Journal Article] Aromaphilicity index: The affinity of amino acids for aromatic surfaces2022
- Author(s)
  平野篤、亀田倫史
- Journal Title
  
  Seibutsu-kogaku Kaishi
  
  Volume: 100 Issue: 1 Pages: 29-37
- DOI
  10.34565/seibutsukogaku.100.1_29
- NAID
  130008143997
- ISSN
  0919-3758, 2435-8630
- Year and Date
  2022-01-25
- Language
  Japanese
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H01809
[Journal Article] Free energy and kinetic rate calculation via non-equilibrium molecular simulation: application to biomolecules2022
- Author(s)
  Iida Shinji, Tomoshi Kameda
- Journal Title
  
  Biophysical Reviews
  
  Volume: 14 Issue: 6 Pages: 1303-1314
- DOI
  10.1007/s12551-022-01036-3
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22H00553
[Journal Article] A chemoproteoinformatics approach demonstrates that aspirin increases sensitivity to MEK inhibition by directly binding to RPS52022
- Author(s)
  Watanabe Motoki、Boku Shogen、Kobayashi Kaito、Kurumida Yoichi、Sukeno Mamiko、Masuda Mitsuharu、Mizushima Katsura、Kato Chikage、Iizumi Yosuke、Hirota Kiichi、Naito Yuji、Mutoh Michihiro、Kameda Tomoshi、Sakai Toshiyuki
- Journal Title
  
  PNAS Nexus
  
  Volume: 1 Issue: 2
- DOI
  10.1093/pnasnexus/pgac059
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K10489, KAKENHI-PROJECT-22K18407, KAKENHI-PROJECT-19H01079
[Journal Article] Stabilization of CDK6 by ribosomal protein uS7, a target protein of the natural product fucoxanthinol2022
- Author(s)
  Iizumi Yosuke, Sowa Yoshihiro, Goi Wakana, Aono Yuichi, Watanabe Motoki, Kurumida Yoichi, Kameda Tomoshi, Akaji Kenichi, Kitagawa Masatoshi, Sakai Toshiyuki.
- Journal Title
  
  Communications Biology
  
  Volume: 5 Issue: 1 Pages: 564-564
- DOI
  10.1038/s42003-022-03522-6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K07378, KAKENHI-PROJECT-22K10489, KAKENHI-PROJECT-22K18407, KAKENHI-PROJECT-19H01079
[Journal Article] The Affinity of Amino Acid Side Chains for Aromatic Surfaces—Aromaphilicity: Qualitative Experiments and Quantitative Molecular Dynamics Simulations2022
- Author(s)
  HIRANO Atsushi、KAMEDA Tomoshi
- Journal Title
  
  Seibutsu Butsuri
  
  Volume: 62 Issue: 1 Pages: 46-49
- DOI
  10.2142/biophys.62.46
- ISSN
  0582-4052, 1347-4219
- Language
  Japanese
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H01809
[Journal Article] Aromaphilicity Index of Amino Acids: Molecular Dynamics Simulations of the Protein Binding Affinity for Carbon Nanomaterials2021
- Author(s)
  Hirano Atsushi、Kameda Tomoshi
- Journal Title
  
  ACS Applied Nano Materials
  
  Volume: 4 Issue: 3 Pages: 2486-2495
- DOI
  10.1021/acsanm.0c03047
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H01809
[Journal Article] The solubility of N-acetyl amino acid amides in organic acid and alcohol solutions: Mechanistic insight into structural protein solubilization2021
- Author(s)
  Hirano Atsushi、Wada Momoyo、Sato Takehiro K.、Kameda Tomoshi
- Journal Title
  
  International Journal of Biological Macromolecules
  
  Volume: 178 Pages: 607-615
- DOI
  10.1016/j.ijbiomac.2021.02.141
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H01809
[Journal Article] Comprehensive prediction of lncRNA–RNA interactions in human transcriptome2016
- Author(s)
  Goro Terai#, Junichi Iwakiri#, Tomoshi Kameda, Michiaki Hamada*, Kiyoshi Asai*
- Journal Title
  
  BMC Genomics
  
  Volume: 17 Issue: S1 Pages: 12-12
- DOI
  10.1186/s12864-015-2307-5
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-24680031, KAKENHI-PROJECT-25240044
[Journal Article] Improved Accuracy in RNA-Protein Rigid Body Docking by Incorporating Force Field for Molecular Dynamics Simulation into the Scoring Function2016
- Author(s)
  Junichi Iwakiri, Michiaki Hamada, Kiyoshi Asai, and Tomoshi Kameda
- Journal Title
  
  J. Chem. Theory Comput
  
  Volume: 12(9) Issue: 9 Pages: 4688-5697
- DOI
  10.1021/acs.jctc.6b00254
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25240044, KAKENHI-PROJECT-16H06279
[Journal Article] Predicting RNA Duplex Dimerization Free-Energy Changes upon Mutations Using Molecular Dynamics Simulations2015
- Author(s)
  Shun Sakuraba, Kiyoshi Asai, Tomoshi Kameda
- Journal Title
  
  he journal of physical chemistry letters
  
  Volume: 6(21) Issue: 21 Pages: 4341-4358
- DOI
  10.1021/acs.jpclett.5b01984
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25240044
[Journal Article] Analysis of base-pairing probabilities of RNA molecules involved in protein-RNA interactions2013
- Author(s)
  Junichi Iwakiri, Tomoshi Kameda, Kiyoshi Asai, Michiaki Hamada
- Journal Title
  
  Bioinformatics
  
  Volume: 29 Issue: 20 Pages: 2524-2528
- DOI
  10.1093/bioinformatics/btt453
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240031, KAKENHI-PROJECT-24680031, KAKENHI-PROJECT-25240044, KAKENHI-PROJECT-221S0002
[Journal Article] Lanthanide-assisted NMR evaluation of a dynamic ensemble of oligosaccharide conformations.2012
- Author(s)
  S.Yamamoto, Y.Zhang, T.Yamaguchi, T.Kameda, and K.Kato
- Journal Title
  
  Chem. Commun.
  
  Volume: 48 Issue: 39 Pages: 4752-4754
- DOI
  10.1039/c2cc30353a
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-20107004, KAKENHI-PROJECT-21370050, KAKENHI-PROJECT-23700359
[Journal Article] On easy implementation of a variant of the replica exchange with solute tempering in GROMACS2011
- Author(s)
  T. Terakawa, T. Kameda, S. Takada
- Journal Title
  
  J. Comp.Chem
  
  Volume: vol.32, No.7 Issue: 7 Pages: 1228-1234
- DOI
  10.1002/jcc.21703
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22370057, KAKENHI-PROJECT-23700359
[Journal Article] Combined Use of Replica-Exchange Molecular Dynamics and Magic-Angle-Spinning Solid-State NMR Spectral Simulations for Determining the Structure and Orientation of Membrane-Bound Peptide2011
- Author(s)
  Keisuke Ikeda, Tomoshi Kameda, Erisa Harada, Hideo Akutsu, and Toshimichi Fujiwara
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 115 Issue: 29 Pages: 9327-9336
- DOI
  10.1021/jp205290t
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700359
[Presentation] Solubilization of Carbon Nanobelts in Aqueous Surfactant Solutions2024
- Author(s)
  Atsushi Hirano, Tomoshi Kameda, Momoyo Wada, Takeshi Tanaka, Hiromichi Kataura
- Organizer
  第66回フラーレン・ナノチューブ・グラフェン総合シンポジウム
- Data Source
  KAKENHI-PROJECT-23K23163
[Presentation] A chemoproteoinformatics approach demonstrates that aspirin increases sensitivity to MEK inhibition by directly binding to RPS52023
- Author(s)
  Shogen Boku, Motoki Watanabe, Kaito Kobayashi, Yoichi Kurumida, Mamiko Sukeno, Mitsuharu Masuda, Katsura Mizushima, Chikage Kato, Yosuke Iizumi, Kiichi Hirota, Yuji Naito, Michihiro Mutoh, Tomoshi Kameda, Toshiyuki Sakai
- Organizer
  第20回日本臨床腫瘍学会学術集会
- Data Source
  KAKENHI-PROJECT-22K10489
[Presentation] Dissociation Rate Calculation via Constant-force Steered Molecular Dynamics Simulation2023
- Author(s)
  Shinji Iida, Tomoshi Kameda
- Organizer
  The 2023 Annual Biophysical Society Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H00553
[Presentation] OH基を有する天然物質の標的タンパク質同定法の開発と抗がんメカニズムの解明2023
- Author(s)
  飯泉陽介, 曽和義広, 後居和佳奈, 青野裕一, 渡邉元樹, 来見田遥一, 亀田倫史, 赤路健一, 北川雅敏, 酒井敏行
- Organizer
  第８２回日本癌学会学術総会
- Data Source
  KAKENHI-PROJECT-22K10489
[Presentation] OH基を有する化合物の標的タンパク質同定法の開発と抗がん作用の機序解明2023
- Author(s)
  飯泉陽介, 曽和義広, 後居和佳奈, 青野裕一, 渡邉元樹, 来見田遥一, 亀田倫史, 赤路健一, 北川雅敏, 酒井敏行
- Organizer
  日本農芸化学会2023年度大会
- Data Source
  KAKENHI-PROJECT-22K10489
[Presentation] OH基を有する化合物全般に使える標的タンパク質同定法の開発2023
- Author(s)
  飯泉陽介, 曽和義広, 後居和佳奈, 青野裕一, 渡邉元樹, 来見田遥一, 亀田倫史, 赤路健一, 北川雅敏, 酒井敏行
- Organizer
  第２８回日本フードファクター学会学術集会
- Data Source
  KAKENHI-PROJECT-22K10489
[Presentation] Control of pH-dependent lipid bilayer permeation of cyclic peptides with noncanonical amino acids2023
- Author(s)
  Keisuke Ikeda, Motomi Matsuda, Tomoshi Kameda, Hiroyuki Nakao, Minoru Nakano
- Organizer
  ICOM2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K27311
[Presentation] OH基を有する化合物の標的タンパク質同定法の開発と作用機序解明2023
- Author(s)
  飯泉陽介, 曽和義広, 後居和佳奈, 青野裕一, 渡邉元樹, 来見田遥一, 亀田倫史, 赤路健一, 北川雅敏, 酒井敏行
- Organizer
  第22回分子予防環境医学研究会
- Data Source
  KAKENHI-PROJECT-22K10489
[Presentation] 環状ペプチドの pH 依存的な脂質膜透過活性の制御2023
- Author(s)
  池田恵介, 松田幹望, 亀田倫史, 中尾裕之, 中野実
- Organizer
  第44回生体膜と薬物の相互作用シンポジウム
- Data Source
  KAKENHI-PROJECT-23K27311
[Presentation] OH基が一つあれば、化合物の標的タンパク質を同定できる手法の開発2023
- Author(s)
  飯泉陽介, 曽和義広, 後居和佳奈, 青野裕一, 渡邉元樹, 来見田遥一, 亀田倫史, 赤路健一, 北川雅敏, 酒井敏行
- Organizer
  日本ケミカルバイオロジー学会第17回年会
- Data Source
  KAKENHI-PROJECT-22K10489
[Presentation] A chemoproteoinformatics approach demonstrates that aspirin increases sensitivity to MEK inhibition by directly binding to RPS52023
- Author(s)
  Shogen Boku, Motoki Watanabe, Tomoshi Kameda
- Organizer
  The 6th International Cancer Research Symposium
- Invited
- Data Source
  KAKENHI-PROJECT-22K10489
[Presentation] ポストゲノム時代のケモプロテオインフォマティクス創薬戦略2022
- Author(s)
  渡邉元樹, 朴将源, 亀田倫史
- Organizer
  がん予防学術大会2022
- Invited
- Data Source
  KAKENHI-PROJECT-22K10489
[Presentation] Carbon Nanotubes Induce Oxidative Stress in Coenzyme-Dependent Metabolic Reactions2022
- Author(s)
  平野篤、亀田倫史、和田百代、田中丈士、片浦弘道
- Organizer
  第62回フラーレン・ナノチューブ・グラフェン総合シンポジウム
- Data Source
  KAKENHI-PROJECT-18H01809
[Presentation] ポストゲノム時代のケモプロテオインフォマティクス創薬戦略－天然化合物から化学予防剤へ―2022
- Author(s)
  渡邉元樹, 朴将源, 亀田倫史
- Organizer
  第81回日本癌学会学術集会
- Invited
- Data Source
  KAKENHI-PROJECT-22K10489
[Presentation] Non-equilibrium Molecular Dynamics Simulation under Constant Force Revisited2022
- Author(s)
  Shinji Iida, Tomoshi Kameda
- Organizer
  第60回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-22H00553
[Presentation] Aromaphilicity index: アミノ酸と芳香族表面の相互作用の指標2021
- Author(s)
  平野篤、亀田倫史
- Organizer
  第21回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-18H01809
[Presentation] Aromaphilicity index of amino acids: Prediction of protein binding affinity for aromatic surfaces2021
- Author(s)
  平野篤、亀田倫史
- Organizer
  第59回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-18H01809
[Presentation] Application of next-generation sequencing analysis in the directed evolution for creating antibody mimic2021
- Author(s)
  Tomoyuki Ito, Hafumi Nishi, Thuy Duong Nguyen, Yutaka Saito, Tomoshi Kameda, Hikaru Nakazawa, Koji Tsuda, Mitsuo Umetsu
- Organizer
  65th Biophysical Society Annual Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H00315
[Presentation] Aromaphilicity: the affinity for graphene and carbon nanotubes determined by experiments and simulations2021
- Author(s)
  平野篤、亀田倫史、和田百代、田中丈士、片浦弘道
- Organizer
  第61回フラーレン・ナノチューブ・グラフェン総合シンポジウム
- Data Source
  KAKENHI-PROJECT-18H01809
[Presentation] Improved accuracy in RNA-protein rigid body docking by incorporating force eld for molecular dynamics simulation into the scoring function2016
- Author(s)
  unichi Iwakiri, Michiaki Hamada, Kiyoshi Asai, Tomoshi Kameda
- Organizer
  RNA2016
- Place of Presentation
  京都国際会議場
- Year and Date
  2016-06-29
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25240044
[Presentation] Predicting RNA-RNA duplex dimerization energy from the molecular dynamics simulation2016
- Author(s)
  Shun Sakuraba, Tomoshi Kameda and Kiyoshi Asai
- Organizer
  RNA2016
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02484
[Presentation] RNA-RNA の相対結合自由エネルギー計算2016
- Author(s)
  桜庭俊, 浅井潔, 亀田倫史
- Organizer
  第19回理論化学討論会
- Data Source
  KAKENHI-PROJECT-16H02484
[Presentation] 分子動力学法による核酸修飾塩基対の結合エネルギー予測2015
- Author(s)
  桜庭俊、亀田倫史、浅井潔
- Organizer
  第17回日本RNA学会年会
- Place of Presentation
  北海道札幌市　ホテルライフォート札幌
- Year and Date
  2015-07-15
- Data Source
  KAKENHI-PROJECT-25240044
[Presentation] 分子動力学計算を用いた蛋白質・RNA 複合体立体構㐀予測2015
- Author(s)
  由良敬，岩切淳一，浜田道昭，浅井潔，亀田倫史
- Organizer
  第17回日本RNA学会年会
- Place of Presentation
  札幌パークホテル
- Year and Date
  2015-07-15
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25240044
[Presentation] ヒトトランスクリプトームにおける網羅的 lncRNA-RNA 相互作用予測2015
- Author(s)
  寺井悟朗、岩切淳一、亀田倫史、浜田道昭、浅井潔
- Organizer
  第17回日本RNA学会年会
- Place of Presentation
  札幌パークホテル
- Year and Date
  2015-07-15
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25240044
[Presentation] RNA 発現量を用いた組織特異的 lncRNA-mRNA 相互作用予測2015
- Author(s)
  岩切淳一、寺井悟朗、亀田倫史、浅井潔、浜田道昭
- Organizer
  第17回日本RNA学会年会
- Place of Presentation
  札幌パークホテル
- Year and Date
  2015-07-15
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25240044
[Presentation] 分子動力学計算を用いたRNA・タンパク質複合体立体構造予測2015
- Author(s)
  由良敬、岩切淳一、浜田道昭、浅井潔、亀田倫史
- Organizer
  第17回日本RNA学会年会
- Place of Presentation
  北海道札幌市　ホテルライフォート札幌
- Year and Date
  2015-07-15
- Data Source
  KAKENHI-PROJECT-25240044
[Presentation] RNA－タンパク質相互作用予測法の開発2014
- Author(s)
  岩切淳一、亀田倫史、浅井潔、浜田道昭
- Organizer
  第16回日本RNA学会年会
- Place of Presentation
  愛知県名古屋市　ウインクあいち
- Year and Date
  2014-07-23
- Data Source
  KAKENHI-PROJECT-25240044
[Presentation] 分子動力学計算を用いたRNA・タンパク質複合体立体構造予測2014
- Author(s)
  由良敬、岩切淳一、浜田道昭、浅井潔、亀田倫史
- Organizer
  第16回日本RNA学会年会
- Place of Presentation
  愛知県名古屋市　ウインクあいち
- Year and Date
  2014-07-23
- Data Source
  KAKENHI-PROJECT-25240044
[Presentation] 粗視化モデル分子動力学法を用いた RNA 立体構造予測2012
- Author(s)
  亀田倫史
- Organizer
  日本生物物理学会
- Place of Presentation
  名古屋大学(愛知県)
- Year and Date
  2012-09-24
- Data Source
  KAKENHI-PROJECT-23700359
[Presentation] 分子動力学シミュレーション技術による化合物可溶化メカニズムの解明2012
- Author(s)
  亀田倫史
- Organizer
  CBI学会(招待講演)
- Place of Presentation
  東京・総評会館
- Data Source
  KAKENHI-PROJECT-23700359
[Presentation] 粗視化モデル分子動力学法を用いたRNA 立体構造予測2012
- Author(s)
  亀田倫史
- Organizer
  日本生物物理学会
- Place of Presentation
  名古屋大学
- Data Source
  KAKENHI-PROJECT-23700359
[Presentation] NMRと分子動力学法との融合2011
- Author(s)
  亀田倫史
- Organizer
  第12回若手NMR研究会(招待講演)
- Place of Presentation
  滋賀・琵琶湖リゾートクラブ
- Data Source
  KAKENHI-PROJECT-23700359
[Presentation] 蛋白質異常凝集の原理と制御2011
- Author(s)
  亀田倫史
- Organizer
  大阪大学蛋白質研究所・蛋白研セミナー(招待講演)
- Place of Presentation
  大阪・大阪大学蛋白質研究所
- Data Source
  KAKENHI-PROJECT-23700359
[Presentation] 分子動力学計算を用いた蛋白質・RNA 複合体立体構造予測
- Author(s)
  由良敬、岩切淳一、浜田道昭、浅井潔、亀田倫史
- Organizer
  第16回日本RNA学会
- Place of Presentation
  名古屋
- Year and Date
  2014-07-23 – 2014-07-25
- Data Source
  KAKENHI-PROJECT-25240044
[Presentation] 分子動力学計算を用いた蛋白質･RNA 複合体立体構造予測
- Author(s)
  由良敬、岩切淳一、浜田道昭、浅井潔、亀田倫史
- Organizer
  第52回日本生物物理学会
- Place of Presentation
  札幌
- Year and Date
  2014-09-25 – 2014-09-27
- Data Source
  KAKENHI-PROJECT-25240044
[Presentation] RNA-タンパク質相互作用予測手法の開発
- Author(s)
  岩切淳一、亀田倫史、浅井潔、浜田道昭
- Organizer
  第16回日本RNA学会
- Place of Presentation
  名古屋
- Year and Date
  2014-07-23 – 2014-07-25
- Data Source
  KAKENHI-PROJECT-25240044

1. Hirano Atsushi (90613547)

# of Collaborated Projects: 4 results

# of Collaborated Products: 10 results
2. 白木賢太郎 (90334797)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
3. Asai Kiyoshi (30356357)

# of Collaborated Projects: 2 results

# of Collaborated Products: 16 results
4. 浜田道昭 (00596538)

# of Collaborated Projects: 2 results

# of Collaborated Products: 12 results
5. 齋藤裕 (60721496)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
6. YURA Kei (50252226)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
7. Umetsu Mitsuo (70333846)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
8. 石黒亮 (70373264)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 阿部洋 (80415067)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 櫻庭俊 (90647380)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
11. 田中丈士 (30415707)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
12. 津田宏治 (90357517)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
13. 伊藤智之 (40987880)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
14. 中道優介 (20751217)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 森田英嗣 (70344653)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 来見田遥一 (80976762)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. 小林海渡 (31003957)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 渡邉元樹 (40723581)

# of Collaborated Projects: 1 results

# of Collaborated Products: 10 results
19. 池田恵介 (00553281)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
20. 中尾裕之 (00805020)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
21. 片浦弘道

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
22. 加藤晃一

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
23. 高田彰二

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
24. 北川雅敏

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Kameda Tomoshi 亀田 倫史

KAMEDA Tomoshi 亀田 倫史

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Predicting corona virus evolution by combining molecular dynamics simulation and machine learning.Principal Investigator

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Tertiary structure prediction by multi-scale simulationPrincipal Investigator

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[Journal Article] Coenzyme corona formation on carbon nanotubes leads to disruption of the redox balance in metabolic reactions2023

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[Journal Article] Solubilization of Carbon Nanobelts in Aqueous Solutions: Optical and Colloidal Properties2023

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[Journal Article] Fine-Tuning and Enhancement of pH-Dependent Membrane Permeation of Cyclic Peptides by Utilizing Noncanonical Amino Acids with Extended Side Chains2023

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[Journal Article] Protein’s Protein Corona: Nanoscale Size Evolution of Human Immunoglobulin G Aggregates Induced by Serum Albumin2022

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Kameda Tomoshi 亀田倫史

KAMEDA Tomoshi 亀田倫史

[Journal Article] Comprehensive prediction of lncRNA–RNA interactions in human transcriptome2016