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Kameda Tomoshi  亀田 倫史

… Alternative Names

KAMEDA Tomoshi  亀田 倫史

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Researcher Number 40415774
Other IDs
  • ORCIDhttps://orcid.org/0000-0001-9508-5366
Affiliation (Current) 2025: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 上級主任研究員
Affiliation (based on the past Project Information) *help 2022 – 2024: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 上級主任研究員
2016 – 2022: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 主任研究員
2016: 国立研究開発法人産業技術総合研究所, 創薬基盤研究部門, 主任研究員
2015: 国立研究開発法人産業技術総合研究所, 人工知能研究センター, 主任研究員
2014: 国立研究開発法人産業技術総合研究所, 創薬基盤研究部門, 主任研究員 … More
2013: 独立行政法人産業技術総合研究所, ゲノム情報研究センター, 研究員
2012: 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 主任研究員
2011: 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 研究員 Less
Review Section/Research Field
Principal Investigator
Medium-sized Section 62:Applied informatics and related fields / Bioinformatics/Life informatics
Except Principal Investigator
Basic Section 28010:Nanometer-scale chemistry-related / Medium-sized Section 63:Environmental analyses and evaluation and related fields / Basic Section 47020:Pharmaceutical analytical chemistry and physicochemistry-related / Basic Section 58020:Hygiene and public health-related: including laboratory approach / Medium-sized Section 27:Chemical engineering and related fields / Medium-sized Section 28:Nano/micro science and related fields / System genome science / Life / Health / Medical informatics
Keywords
Principal Investigator
シュードウイルス / カロリメトリー / スパイク蛋白質 / 進化予測 / 分子動力学シミュレーション / 機械学習 / 新型コロナウイルス / 分子動力学 / 分子動力学(MD) / 立体構造予測 / RNA / 蛋白質 … More
Except Principal Investigator
… More タンパク質 / タンパク質コロナ / ナノ粒子 / 分子動力学計算 / 酸化還元 / カーボンナノチューブ / 分子動力学 / RNA2次構造 / RNA2次構造 / マイクロプラスチック / ナノプラスチック / 脂質膜 / ドラッグデリバリ―システム / 膜透過 / 環状ペプチド / DDS / 膜透過ペプチド / 食品成分 / がん腫瘍学 / がん予防学 / 天然化合物 / 分子動力学シミュレーション / ケモプロテオミクス / ペリリルアルコール / セサミノール / がん予防 / 抗体 / 機械学習 / 進化分子工学 / リフォールディング / エピトランスクリプトーム解析 / エピとランスクリプトーム解析 / RNA2次構造 / エヒトランスプリクトーム / エネルギーパラメタ / バイオインフォマティクス / エピトランスクリプトーム / 修飾塩基 / RNA立体構造 / RNA・タンパク質相互作用 / RNAタンパク質相互作用 / ドッキング計算 / RNA-タンパク質相互作用 Less
  • Research Projects

    (11 results)
  • Research Products

    (55 results)
  • Co-Researchers

    (24 People)
  •  Protein corona formation of nanoplastics

    • Principal Investigator
      平野 篤
    • Project Period (FY)
      2024 – 2029
    • Research Category
      Grant-in-Aid for Challenging Research (Pioneering)
    • Review Section
      Medium-sized Section 63:Environmental analyses and evaluation and related fields
    • Research Institution
      National Institute of Advanced Industrial Science and Technology
  •  脂質二重膜透過アッセイ系と人工知能による膜透過性環状ペプチドの合理的設計

    • Principal Investigator
      池田 恵介
    • Project Period (FY)
      2023 – 2026
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 47020:Pharmaceutical analytical chemistry and physicochemistry-related
    • Research Institution
      University of Toyama
  •  Predicting corona virus evolution by combining molecular dynamics simulation and machine learning.Principal Investigator

    • Principal Investigator
      亀田 倫史
    • Project Period (FY)
      2022 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 62:Applied informatics and related fields
    • Research Institution
      National Institute of Advanced Industrial Science and Technology
  •  Chemoproteomics and molecular dynamics simulation-based drug discovery platforms for chemoprevention

    • Principal Investigator
      渡邉 元樹
    • Project Period (FY)
      2022 – 2024
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 58020:Hygiene and public health-related: including laboratory approach
    • Research Institution
      Kyoto Prefectural University of Medicine
  •  Mechanism of oxidative stress cooperatively induced by nanoparticles and transition metal

    • Principal Investigator
      平野 篤
    • Project Period (FY)
      2022 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 28010:Nanometer-scale chemistry-related
    • Research Institution
      National Institute of Advanced Industrial Science and Technology
  •  Evolutionary Molecular Engineering Guided by Machine Learning: Smart Maturation Process for Cancer Therapeutic Antibodies

    • Principal Investigator
      Umetsu Mitsuo
    • Project Period (FY)
      2020 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 27:Chemical engineering and related fields
    • Research Institution
      Tohoku University
  •  Highly efficient refolding of proteins using carbon nanotubes

    • Principal Investigator
      Hirano Atsushi
    • Project Period (FY)
      2018 – 2019
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Review Section
      Medium-sized Section 28:Nano/micro science and related fields
    • Research Institution
      National Institute of Advanced Industrial Science and Technology
  •  A study of protein corona formation using purified carbon nanotubes

    • Principal Investigator
      Hirano Atsushi
    • Project Period (FY)
      2018 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 28010:Nanometer-scale chemistry-related
    • Research Institution
      National Institute of Advanced Industrial Science and Technology
  •  RNA informatics for epi-transcriptome analysis

    • Principal Investigator
      Asai Kiyoshi
    • Project Period (FY)
      2016 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      System genome science
    • Research Institution
      The University of Tokyo
  •  Comprehensive prediction of RNA-protein interactinos

    • Principal Investigator
      Asai Kiyoshi
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      The University of Tokyo
  •  Tertiary structure prediction by multi-scale simulationPrincipal Investigator

    • Principal Investigator
      KAMEDA Tomoshi
    • Project Period (FY)
      2011 – 2012
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      National Institute of Advanced Industrial Science and Technology

All 2024 2023 2022 2021 2016 2015 2014 2013 2012 2011 Other

All Journal Article Presentation

  • [Journal Article] Coenzyme corona formation on carbon nanotubes leads to disruption of the redox balance in metabolic reactions2023

    • Author(s)
      Hirano Atsushi、Kameda Tomoshi、Wada Momoyo、Tanaka Takeshi、Kataura Hiromichi
    • Journal Title

      Nanoscale

      Volume: 15 Issue: 5 Pages: 2340-2353

    • DOI

      10.1039/d2nr05213j

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20H05668, KAKENHI-PROJECT-23K23163
  • [Journal Article] Solubilization of Carbon Nanobelts in Aqueous Solutions: Optical and Colloidal Properties2023

    • Author(s)
      Hirano Atsushi、Kameda Tomoshi、Wada Momoyo、Tanaka Takeshi、Kataura Hiromichi
    • Journal Title

      Nano Letters

      Volume: 23 Issue: 23 Pages: 11167-11173

    • DOI

      10.1021/acs.nanolett.3c03673

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20H05668, KAKENHI-PROJECT-23K23163
  • [Journal Article] Fine-Tuning and Enhancement of pH-Dependent Membrane Permeation of Cyclic Peptides by Utilizing Noncanonical Amino Acids with Extended Side Chains2023

    • Author(s)
      Matsuda Motomi、Ikeda Keisuke、Kameda Tomoshi、Nakao Hiroyuki、Nakano Minoru
    • Journal Title

      Journal of Medicinal Chemistry

      Volume: 66 Issue: 10 Pages: 7054-7062

    • DOI

      10.1021/acs.jmedchem.3c00628

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23K14144, KAKENHI-PROJECT-23K23461, KAKENHI-PROJECT-23K27311
  • [Journal Article] Protein’s Protein Corona: Nanoscale Size Evolution of Human Immunoglobulin G Aggregates Induced by Serum Albumin2022

    • Author(s)
      Nakayama Tomohito、Kobayashi Kaito、Kameda Tomoshi、Hase Muneaki、Hirano Atsushi
    • Journal Title

      ACS Applied Materials & Interfaces

      Volume: 14 Issue: 29 Pages: 32937-32947

    • DOI

      10.1021/acsami.2c08271

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H01809
  • [Journal Article] Aromaphilicity index: The affinity of amino acids for aromatic surfaces2022

    • Author(s)
      平野 篤、亀田 倫史
    • Journal Title

      Seibutsu-kogaku Kaishi

      Volume: 100 Issue: 1 Pages: 29-37

    • DOI

      10.34565/seibutsukogaku.100.1_29

    • NAID

      130008143997

    • ISSN
      0919-3758, 2435-8630
    • Year and Date
      2022-01-25
    • Language
      Japanese
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H01809
  • [Journal Article] Free energy and kinetic rate calculation via non-equilibrium molecular simulation: application to biomolecules2022

    • Author(s)
      Iida Shinji, Tomoshi Kameda
    • Journal Title

      Biophysical Reviews

      Volume: 14 Issue: 6 Pages: 1303-1314

    • DOI

      10.1007/s12551-022-01036-3

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22H00553
  • [Journal Article] A chemoproteoinformatics approach demonstrates that aspirin increases sensitivity to MEK inhibition by directly binding to RPS52022

    • Author(s)
      Watanabe Motoki、Boku Shogen、Kobayashi Kaito、Kurumida Yoichi、Sukeno Mamiko、Masuda Mitsuharu、Mizushima Katsura、Kato Chikage、Iizumi Yosuke、Hirota Kiichi、Naito Yuji、Mutoh Michihiro、Kameda Tomoshi、Sakai Toshiyuki
    • Journal Title

      PNAS Nexus

      Volume: 1 Issue: 2

    • DOI

      10.1093/pnasnexus/pgac059

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K10489, KAKENHI-PROJECT-22K18407, KAKENHI-PROJECT-19H01079
  • [Journal Article] Stabilization of CDK6 by ribosomal protein uS7, a target protein of the natural product fucoxanthinol2022

    • Author(s)
      Iizumi Yosuke, Sowa Yoshihiro, Goi Wakana, Aono Yuichi, Watanabe Motoki, Kurumida Yoichi, Kameda Tomoshi, Akaji Kenichi, Kitagawa Masatoshi, Sakai Toshiyuki.
    • Journal Title

      Communications Biology

      Volume: 5 Issue: 1 Pages: 564-564

    • DOI

      10.1038/s42003-022-03522-6

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K07378, KAKENHI-PROJECT-22K10489, KAKENHI-PROJECT-22K18407, KAKENHI-PROJECT-19H01079
  • [Journal Article] The Affinity of Amino Acid Side Chains for Aromatic Surfaces—Aromaphilicity: Qualitative Experiments and Quantitative Molecular Dynamics Simulations2022

    • Author(s)
      HIRANO Atsushi、KAMEDA Tomoshi
    • Journal Title

      Seibutsu Butsuri

      Volume: 62 Issue: 1 Pages: 46-49

    • DOI

      10.2142/biophys.62.46

    • ISSN
      0582-4052, 1347-4219
    • Language
      Japanese
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H01809
  • [Journal Article] Aromaphilicity Index of Amino Acids: Molecular Dynamics Simulations of the Protein Binding Affinity for Carbon Nanomaterials2021

    • Author(s)
      Hirano Atsushi、Kameda Tomoshi
    • Journal Title

      ACS Applied Nano Materials

      Volume: 4 Issue: 3 Pages: 2486-2495

    • DOI

      10.1021/acsanm.0c03047

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H01809
  • [Journal Article] The solubility of N-acetyl amino acid amides in organic acid and alcohol solutions: Mechanistic insight into structural protein solubilization2021

    • Author(s)
      Hirano Atsushi、Wada Momoyo、Sato Takehiro K.、Kameda Tomoshi
    • Journal Title

      International Journal of Biological Macromolecules

      Volume: 178 Pages: 607-615

    • DOI

      10.1016/j.ijbiomac.2021.02.141

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H01809
  • [Journal Article] Comprehensive prediction of lncRNA–RNA interactions in human transcriptome2016

    • Author(s)
      Goro Terai#, Junichi Iwakiri#, Tomoshi Kameda, Michiaki Hamada*, Kiyoshi Asai*
    • Journal Title

      BMC Genomics

      Volume: 17 Issue: S1 Pages: 12-12

    • DOI

      10.1186/s12864-015-2307-5

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-24680031, KAKENHI-PROJECT-25240044
  • [Journal Article] Improved Accuracy in RNA-Protein Rigid Body Docking by Incorporating Force Field for Molecular Dynamics Simulation into the Scoring Function2016

    • Author(s)
      Junichi Iwakiri, Michiaki Hamada, Kiyoshi Asai, and Tomoshi Kameda
    • Journal Title

      J. Chem. Theory Comput

      Volume: 12(9) Issue: 9 Pages: 4688-5697

    • DOI

      10.1021/acs.jctc.6b00254

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-25240044, KAKENHI-PROJECT-16H06279
  • [Journal Article] Predicting RNA Duplex Dimerization Free-Energy Changes upon Mutations Using Molecular Dynamics Simulations2015

    • Author(s)
      Shun Sakuraba, Kiyoshi Asai, Tomoshi Kameda
    • Journal Title

      he journal of physical chemistry letters

      Volume: 6(21) Issue: 21 Pages: 4341-4358

    • DOI

      10.1021/acs.jpclett.5b01984

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Journal Article] Analysis of base-pairing probabilities of RNA molecules involved in protein-RNA interactions2013

    • Author(s)
      Junichi Iwakiri, Tomoshi Kameda, Kiyoshi Asai, Michiaki Hamada
    • Journal Title

      Bioinformatics

      Volume: 29 Issue: 20 Pages: 2524-2528

    • DOI

      10.1093/bioinformatics/btt453

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22240031, KAKENHI-PROJECT-24680031, KAKENHI-PROJECT-25240044, KAKENHI-PROJECT-221S0002
  • [Journal Article] Lanthanide-assisted NMR evaluation of a dynamic ensemble of oligosaccharide conformations.2012

    • Author(s)
      S.Yamamoto, Y.Zhang, T.Yamaguchi, T.Kameda, and K.Kato
    • Journal Title

      Chem. Commun.

      Volume: 48 Issue: 39 Pages: 4752-4754

    • DOI

      10.1039/c2cc30353a

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107004, KAKENHI-PROJECT-21370050, KAKENHI-PROJECT-23700359
  • [Journal Article] On easy implementation of a variant of the replica exchange with solute tempering in GROMACS2011

    • Author(s)
      T. Terakawa, T. Kameda, S. Takada
    • Journal Title

      J. Comp.Chem

      Volume: vol.32, No.7 Issue: 7 Pages: 1228-1234

    • DOI

      10.1002/jcc.21703

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22370057, KAKENHI-PROJECT-23700359
  • [Journal Article] Combined Use of Replica-Exchange Molecular Dynamics and Magic-Angle-Spinning Solid-State NMR Spectral Simulations for Determining the Structure and Orientation of Membrane-Bound Peptide2011

    • Author(s)
      Keisuke Ikeda, Tomoshi Kameda, Erisa Harada, Hideo Akutsu, and Toshimichi Fujiwara
    • Journal Title

      J. Phys. Chem. B

      Volume: 115 Issue: 29 Pages: 9327-9336

    • DOI

      10.1021/jp205290t

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23700359
  • [Presentation] Solubilization of Carbon Nanobelts in Aqueous Surfactant Solutions2024

    • Author(s)
      Atsushi Hirano, Tomoshi Kameda, Momoyo Wada, Takeshi Tanaka, Hiromichi Kataura
    • Organizer
      第66回 フラーレン・ナノチューブ・グラフェン総合シンポジウム
    • Data Source
      KAKENHI-PROJECT-23K23163
  • [Presentation] A chemoproteoinformatics approach demonstrates that aspirin increases sensitivity to MEK inhibition by directly binding to RPS52023

    • Author(s)
      Shogen Boku, Motoki Watanabe, Kaito Kobayashi, Yoichi Kurumida, Mamiko Sukeno, Mitsuharu Masuda, Katsura Mizushima, Chikage Kato, Yosuke Iizumi, Kiichi Hirota, Yuji Naito, Michihiro Mutoh, Tomoshi Kameda, Toshiyuki Sakai
    • Organizer
      第20回日本臨床腫瘍学会学術集会
    • Data Source
      KAKENHI-PROJECT-22K10489
  • [Presentation] Dissociation Rate Calculation via Constant-force Steered Molecular Dynamics Simulation2023

    • Author(s)
      Shinji Iida, Tomoshi Kameda
    • Organizer
      The 2023 Annual Biophysical Society Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22H00553
  • [Presentation] OH基を有する天然物質の標的タンパク質同定法の開発と抗がんメカニズムの解明2023

    • Author(s)
      飯泉陽介, 曽和義広, 後居和佳奈, 青野裕一, 渡邉元樹, 来見田遥一, 亀田倫史, 赤路健一, 北川雅敏, 酒井敏行
    • Organizer
      第82回日本癌学会学術総会
    • Data Source
      KAKENHI-PROJECT-22K10489
  • [Presentation] OH基を有する化合物の標的タンパク質同定法の開発と抗がん作用の機序解明2023

    • Author(s)
      飯泉陽介, 曽和義広, 後居和佳奈, 青野裕一, 渡邉元樹, 来見田遥一, 亀田倫史, 赤路健一, 北川雅敏, 酒井敏行
    • Organizer
      日本農芸化学会2023年度大会
    • Data Source
      KAKENHI-PROJECT-22K10489
  • [Presentation] OH基を有する化合物全般に使える標的タンパク質同定法の開発2023

    • Author(s)
      飯泉陽介, 曽和義広, 後居和佳奈, 青野裕一, 渡邉元樹, 来見田遥一, 亀田倫史, 赤路健一, 北川雅敏, 酒井敏行
    • Organizer
      第28回日本フードファクター学会学術集会
    • Data Source
      KAKENHI-PROJECT-22K10489
  • [Presentation] Control of pH-dependent lipid bilayer permeation of cyclic peptides with noncanonical amino acids2023

    • Author(s)
      Keisuke Ikeda, Motomi Matsuda, Tomoshi Kameda, Hiroyuki Nakao, Minoru Nakano
    • Organizer
      ICOM2023
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K27311
  • [Presentation] OH基を有する化合物の標的タンパク質同定法の開発と作用機序解明2023

    • Author(s)
      飯泉陽介, 曽和義広, 後居和佳奈, 青野裕一, 渡邉元樹, 来見田遥一, 亀田倫史, 赤路健一, 北川雅敏, 酒井敏行
    • Organizer
      第22回分子予防環境医学研究会
    • Data Source
      KAKENHI-PROJECT-22K10489
  • [Presentation] 環状ペプチドの pH 依存的な脂質膜透過活性の制御2023

    • Author(s)
      池田恵介, 松田幹望, 亀田倫史, 中尾裕之, 中野実
    • Organizer
      第44回生体膜と薬物の相互作用シンポジウム
    • Data Source
      KAKENHI-PROJECT-23K27311
  • [Presentation] OH基が一つあれば、化合物の標的タンパク質を同定できる手法の開発2023

    • Author(s)
      飯泉陽介, 曽和義広, 後居和佳奈, 青野裕一, 渡邉元樹, 来見田遥一, 亀田倫史, 赤路健一, 北川雅敏, 酒井敏行
    • Organizer
      日本ケミカルバイオロジー学会第17回年会
    • Data Source
      KAKENHI-PROJECT-22K10489
  • [Presentation] A chemoproteoinformatics approach demonstrates that aspirin increases sensitivity to MEK inhibition by directly binding to RPS52023

    • Author(s)
      Shogen Boku, Motoki Watanabe, Tomoshi Kameda
    • Organizer
      The 6th International Cancer Research Symposium
    • Invited
    • Data Source
      KAKENHI-PROJECT-22K10489
  • [Presentation] ポストゲノム時代のケモプロテオインフォマティクス創薬戦略2022

    • Author(s)
      渡邉 元樹, 朴 将源, 亀田 倫史
    • Organizer
      がん予防学術大会2022
    • Invited
    • Data Source
      KAKENHI-PROJECT-22K10489
  • [Presentation] Carbon Nanotubes Induce Oxidative Stress in Coenzyme-Dependent Metabolic Reactions2022

    • Author(s)
      平野 篤、亀田 倫史、和田 百代、田中 丈士、片浦 弘道
    • Organizer
      第62回フラーレン・ナノチューブ・グラフェン総合シンポジウム
    • Data Source
      KAKENHI-PROJECT-18H01809
  • [Presentation] ポストゲノム時代のケモプロテオインフォマティクス創薬戦略 -天然化合物から化学予防剤へ―2022

    • Author(s)
      渡邉 元樹, 朴 将源, 亀田 倫史
    • Organizer
      第81回日本癌学会学術集会
    • Invited
    • Data Source
      KAKENHI-PROJECT-22K10489
  • [Presentation] Non-equilibrium Molecular Dynamics Simulation under Constant Force Revisited2022

    • Author(s)
      Shinji Iida, Tomoshi Kameda
    • Organizer
      第60回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-22H00553
  • [Presentation] Aromaphilicity index: アミノ酸と芳香族表面の相互作用の指標2021

    • Author(s)
      平野 篤、亀田 倫史
    • Organizer
      第21回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18H01809
  • [Presentation] Aromaphilicity index of amino acids: Prediction of protein binding affinity for aromatic surfaces2021

    • Author(s)
      平野 篤、亀田 倫史
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-18H01809
  • [Presentation] Application of next-generation sequencing analysis in the directed evolution for creating antibody mimic2021

    • Author(s)
      Tomoyuki Ito, Hafumi Nishi, Thuy Duong Nguyen, Yutaka Saito, Tomoshi Kameda, Hikaru Nakazawa, Koji Tsuda, Mitsuo Umetsu
    • Organizer
      65th Biophysical Society Annual Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20H00315
  • [Presentation] Aromaphilicity: the affinity for graphene and carbon nanotubes determined by experiments and simulations2021

    • Author(s)
      平野 篤、亀田 倫史、和田 百代、田中 丈士、片浦 弘道
    • Organizer
      第61回 フラーレン・ナノチューブ・グラフェン総合シンポジウム
    • Data Source
      KAKENHI-PROJECT-18H01809
  • [Presentation] Improved accuracy in RNA-protein rigid body docking by incorporating force eld for molecular dynamics simulation into the scoring function2016

    • Author(s)
      unichi Iwakiri, Michiaki Hamada, Kiyoshi Asai, Tomoshi Kameda
    • Organizer
      RNA2016
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2016-06-29
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Presentation] Predicting RNA-RNA duplex dimerization energy from the molecular dynamics simulation2016

    • Author(s)
      Shun Sakuraba, Tomoshi Kameda and Kiyoshi Asai
    • Organizer
      RNA2016
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02484
  • [Presentation] RNA-RNA の相対結合自由エネルギー計算2016

    • Author(s)
      桜庭 俊, 浅井 潔, 亀田 倫史
    • Organizer
      第19回理論化学討論会
    • Data Source
      KAKENHI-PROJECT-16H02484
  • [Presentation] 分子動力学法による核酸修飾塩基対の結合エネルギー予測2015

    • Author(s)
      桜庭俊、亀田倫史、浅井潔
    • Organizer
      第17回日本RNA学会年会
    • Place of Presentation
      北海道札幌市 ホテルライフォート札幌
    • Year and Date
      2015-07-15
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Presentation] 分子動力学計算を用いた蛋白質・RNA 複合体立体構㐀予測2015

    • Author(s)
      由良敬,岩切淳一,浜田道昭,浅井潔,亀田倫史
    • Organizer
      第17回日本RNA学会年会
    • Place of Presentation
      札幌パークホテル
    • Year and Date
      2015-07-15
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Presentation] ヒトトランスクリプトームにおける網羅的 lncRNA-RNA 相互作用予測2015

    • Author(s)
      寺井悟朗、岩切淳一、亀田倫史、浜田道昭、浅井潔
    • Organizer
      第17回日本RNA学会年会
    • Place of Presentation
      札幌パークホテル
    • Year and Date
      2015-07-15
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Presentation] RNA 発現量を用いた組織特異的 lncRNA-mRNA 相互作用予測2015

    • Author(s)
      岩切淳一、寺井悟朗、亀田倫史、浅井潔 、浜田道昭
    • Organizer
      第17回日本RNA学会年会
    • Place of Presentation
      札幌パークホテル
    • Year and Date
      2015-07-15
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Presentation] 分子動力学計算を用いたRNA・タンパク質複合体立体構造予測2015

    • Author(s)
      由良敬、岩切淳一、浜田道昭、浅井潔、亀田倫史
    • Organizer
      第17回日本RNA学会年会
    • Place of Presentation
      北海道札幌市 ホテルライフォート札幌
    • Year and Date
      2015-07-15
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Presentation] RNA-タンパク質相互作用予測法の開発2014

    • Author(s)
      岩切淳一、亀田倫史、浅井潔、浜田道昭
    • Organizer
      第16回日本RNA学会年会
    • Place of Presentation
      愛知県名古屋市 ウインクあいち
    • Year and Date
      2014-07-23
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Presentation] 分子動力学計算を用いたRNA・タンパク質複合体立体構造予測2014

    • Author(s)
      由良敬、岩切淳一、浜田道昭、浅井潔、亀田倫史
    • Organizer
      第16回日本RNA学会年会
    • Place of Presentation
      愛知県名古屋市 ウインクあいち
    • Year and Date
      2014-07-23
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Presentation] 粗視化モデル分子動力学法を用いた RNA 立体構造予測2012

    • Author(s)
      亀田倫史
    • Organizer
      日本生物物理学会
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2012-09-24
    • Data Source
      KAKENHI-PROJECT-23700359
  • [Presentation] 分子動力学シミュレーション技術による化合物可溶化メカニズムの解明2012

    • Author(s)
      亀田倫史
    • Organizer
      CBI学会(招待講演)
    • Place of Presentation
      東京・総評会館
    • Data Source
      KAKENHI-PROJECT-23700359
  • [Presentation] 粗視化モデル分子動力学法を用いたRNA 立体構造予測2012

    • Author(s)
      亀田倫史
    • Organizer
      日本生物物理学会
    • Place of Presentation
      名古屋大学
    • Data Source
      KAKENHI-PROJECT-23700359
  • [Presentation] NMRと分子動力学法との融合2011

    • Author(s)
      亀田倫史
    • Organizer
      第12回若手NMR研究会(招待講演)
    • Place of Presentation
      滋賀・琵琶湖リゾートクラブ
    • Data Source
      KAKENHI-PROJECT-23700359
  • [Presentation] 蛋白質異常凝集の原理と制御2011

    • Author(s)
      亀田倫史
    • Organizer
      大阪大学蛋白質研究所・蛋白研セミナー(招待講演)
    • Place of Presentation
      大阪・大阪大学蛋白質研究所
    • Data Source
      KAKENHI-PROJECT-23700359
  • [Presentation] 分子動力学計算を用いた蛋白質・RNA 複合体立体構造予測

    • Author(s)
      由良 敬、岩切 淳一、浜田 道昭、浅井 潔、亀田 倫史
    • Organizer
      第16回日本RNA学会
    • Place of Presentation
      名古屋
    • Year and Date
      2014-07-23 – 2014-07-25
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Presentation] 分子動力学計算を用 いた蛋白質・RNA 複合体立体構造予測

    • Author(s)
      由良 敬、岩切 淳一、浜田 道昭、浅井 潔、亀田 倫史
    • Organizer
      第52回日本生物物理学会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-25 – 2014-09-27
    • Data Source
      KAKENHI-PROJECT-25240044
  • [Presentation] RNA-タンパク質相互作用予測手法の開発

    • Author(s)
      岩切淳一、亀田 倫史、浅井 潔、浜田 道昭
    • Organizer
      第16回日本RNA学会
    • Place of Presentation
      名古屋
    • Year and Date
      2014-07-23 – 2014-07-25
    • Data Source
      KAKENHI-PROJECT-25240044
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