Nakagome Shigeki 中込滋樹

Researcher Number	40625208
Other IDs
Affiliation (Current)	2025: 金沢大学, 古代文明・文化資源学研究所, 客員准教授
Affiliation (based on the past Project Information) *help	2022 – 2024: 金沢大学, 古代文明・文化資源学研究所, 客員准教授 2021: 金沢大学, 人間社会研究域, 客員研究員 2020 – 2021: 金沢大学, 古代文明・文化資源学研究センター, 客員研究員 2020: 金沢大学, 古代文明・文化資源学研究所, 客員准教授 2019 – 2020: 金沢大学, 国際文化資源学研究センター, 客員研究員
Review Section/Research Field	Principal Investigator Basic Section 45060:Applied anthropology-related / Humanities and Social Sciences Except Principal Investigator Medium-sized Section 3:History, archaeology, museology, and related fields / Broad Section A / Transformative Research Areas, Section (I)
Keywords	Principal Investigator 集団遺伝学 / 自然選択 / 縄文人 / パレオゲノミクス / パレオゲノム / 全ゲノムimputation / 環境適応 / 狩猟採集民 / ユーラシア / コパン遺跡 … More / 古代ゲノム / マヤ文明 / 集団史 / 文化の転換 / ネイティブアメリカン / 選択圧 / 自然選択の起源 / 二重構造 / 現代日本人 / 三重構造 / 古墳人 / 弥生人 / 集団遺伝学解析 … More Except Principal Investigator パレオゲノミクス / 古人骨 / 遺跡出土骨 / 生物標本 / 博物館 / シングルセル解析 / 植物標本 / 絶滅動物 / シングルセル / 寄生虫卵 / 植物病理標本 / 絶滅哺乳類 / 微量サンプリング / ティカル遺跡 / コパン王朝史 / ティカル国立公園 / コパン王朝 / マヤ文明 / コパンのマヤ遺跡 / 古代ゲノム / 新石器時代後期 / 日本 / 中国 / 東アジア / 新石器時代 / 中国考古学 Less

Elucidating the dynamics of the Copan dynasty in the Maya civilization through paleogenomics
- Principal Investigator
  
  中村誠一
- Project Period (FY)
  2022 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Review Section
  
  Broad Section A
- Research Institution
  Komatsu University
  Kanazawa University
Population genomics of Jomon: elucidating adaptive evolution in ancient hunters and gatherers and its legacy in modern populationsPrincipal Investigator
- Principal Investigator
  
  中込滋樹
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 45060:Applied anthropology-related
- Research Institution
  Kanazawa University
"Shin" Paleogenomics Creates New Perspectives on the Utilization of Museum Materials
- Principal Investigator
  
  Gakuhari Takashi
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 3:History, archaeology, museology, and related fields
- Research Institution
  Kanazawa University
パレオゲノミクス解析プラットフォーム開発とその応用
- Principal Investigator
  
  覚張隆史
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (I)
- Research Institution
  Kanazawa University
Identifying shifts in selective pressures driven by environmental and cultural changes: Population genomics modelling on ancient and modern MayaPrincipal Investigator
- Principal Investigator
  
  中込滋樹
- Project Period (FY)
  2020 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Humanities and Social Sciences
- Research Institution
  Kanazawa University
Applying temporal and spatial population genetics modelling for the origins of modern JapanesePrincipal Investigator
- Principal Investigator
  
  Nakagome Shigeki
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 45060:Applied anthropology-related
- Research Institution
  Kanazawa University

All 2024 2023 2022 2021 2020 2019

All Journal Article Presentation Book

[Book] パレオゲノミクスで紐解く日本人集団の系譜2023
- Author(s)
  中込滋樹
- Total Pages
  7
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-23K23974
[Book] ポストGWAS時代の遺伝統計学オミクス解析と機械学習でヒト疾患を俯瞰する2023
- Author(s)
  岡田随象（編）、中込滋樹　他
- Total Pages
  232
- Publisher
  羊土社
- ISBN
  9784758104104
- Data Source
  KAKENHI-PROJECT-22H04928
[Book] 医学のあゆみ：ヒトの進化と疾患 ─ 自然選択の標的とその副産物2020
- Author(s)
  中込滋樹
- Total Pages
  7
- Publisher
  医歯薬出版株式会社
- Data Source
  KAKENHI-PROJECT-19K06871
[Journal Article] Medieval genomes from eastern Mongolia share a stable genetic profile over a millennium2024
- Author(s)
  Lee Juhyeon、Sato Takehiro、Tajima Atsushi、Amgalantugs Tsend、Tsogtbaatar Batmunkh、Nakagome Shigeki、Miyake Toshihiko、Shiraishi Noriyuki、Jeong Choongwon、Gakuhari Takashi
- Journal Title
  
  Human Population Genetics and Genomics
  
  Volume: 4 Pages: 1-11
- DOI
  10.47248/hpgg2404010004
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K18152, KAKENHI-PLANNED-20H05822, KAKENHI-PROJECT-22H04928, KAKENHI-PROJECT-21H04358, KAKENHI-PROJECT-19H01356, KAKENHI-PROJECT-23K25377
[Journal Article] Genomic insights into a tripartite ancestry in the Southern Ryukyu Islands2023
- Author(s)
  Cooke Niall P.、Mattiangeli Valeria、Cassidy Lara M.、Okazaki Kenji、Kasai Kenji、Bradley Daniel G.、Gakuhari Takashi、Nakagome Shigeki
- Journal Title
  
  Evolutionary Human Sciences
  
  Volume: 5 Pages: 1-9
- DOI
  10.1017/ehs.2023.18
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K23974, KAKENHI-PLANNED-20H05822, KAKENHI-PROJECT-21H04358
[Journal Article] Ancient genomics reveals tripartite origins of Japanese populations2021
- Author(s)
  Cooke Niall P.、Mattiangeli Valeria、Cassidy Lara M.、Okazaki Kenji、Stokes Caroline A.、Onbe Shin、Hatakeyama Satoshi、Machida Kenichi、Kasai Kenji、Tomioka Naoto、Matsumoto Akihiko、Ito Masafumi、Kojima Yoshitaka、Bradley Daniel G.、Gakuhari Takashi、Nakagome Shigeki
- Journal Title
  
  Science Advances
  
  Volume: 7 Issue: 38 Pages: 1-15
- DOI
  10.1126/sciadv.abh2419
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06443, KAKENHI-PROJECT-19K06871, KAKENHI-PUBLICLY-20H05129
[Journal Article] Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations2020
- Author(s)
  Gakuhari T. ,Yoneda M. et.al.
- Journal Title
  
  Communications Biology
  
  Volume: 3 Issue: 1 Pages: 1-40
- DOI
  10.1038/s42003-020-01162-2
- NAID
  120007168801
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-INTERNATIONAL-15K21756, KAKENHI-INTERNATIONAL-16K21721, KAKENHI-PUBLICLY-19H04526, KAKENHI-PUBLICLY-19H05349, KAKENHI-PUBLICLY-20H05135, KAKENHI-PROJECT-17H01453, KAKENHI-PROJECT-18H00735, KAKENHI-PROJECT-19H01356, KAKENHI-PROJECT-19K22753, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-18H05507, KAKENHI-PUBLICLY-20H05129, KAKENHI-PROJECT-17H00939, KAKENHI-PROJECT-18H03590, KAKENHI-PROJECT-18H03593, KAKENHI-PROJECT-20H01323, KAKENHI-PLANNED-16H06408, KAKENHI-PLANNED-16H06412, KAKENHI-PLANNED-17H06381, KAKENHI-PLANNED-19H05737, KAKENHI-PROJECT-16H06320
[Presentation] Insights into demography, selection, and pathogen loads2024
- Author(s)
  Shigeki Nakagome
- Organizer
  International Symposium for Paleogenomics -Great Journey Linking Medicine & Archaeology-
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21H04358
[Presentation] Insights into demography, selection, and pathogen loads2024
- Author(s)
  Shigeki Nakagome
- Organizer
  International Symposium for Paleogenomics -Great Journey Linking Medicine & Archaeology-
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05822
[Presentation] Genomic insights into human past and health from a study of insular East Asia2023
- Author(s)
  Shigeki Nakagome
- Organizer
  Trinity Translational Medical Institute Conference 2023
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05822
[Presentation] 古人骨のゲノム解析から何が分かるのか？2023
- Author(s)
  中込滋樹
- Organizer
  「パレオゲノミクスと次世代マヤ考古学」科研費基盤（S）研究の進捗状況報告シンポジウム
- Data Source
  KAKENHI-PROJECT-22H04928
[Presentation] Genomic insights into human past and health from a study of insular East Asia2023
- Author(s)
  Shigeki Nakagome
- Organizer
  Trinity Translational Medical Institute Conference 2023
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21H04358
[Presentation] Tracing genetic origins and legacy of Japanese populations: insights from ancient genomics in insular East Asia2022
- Author(s)
  Shigeki Nakagome
- Organizer
  Seminar at University College London, London, UK (Talk)
- Data Source
  KAKENHI-PROJECT-22H04928
[Presentation] Exploring the past to understand our health today: an ancient genomics study in insular East Asia2022
- Author(s)
  Shigeki Nakagome
- Organizer
  Seminar at Trinity Translational Research Institute, Dublin, Ireland (Talk)
- Data Source
  KAKENHI-PROJECT-22H04928
[Presentation] パレオゲノミクスから探る現代日本人のルーツ2022
- Author(s)
  中込滋樹
- Organizer
  第33回高遠・分子細胞生物学シンポジウム, オンライン (Talk)
- Data Source
  KAKENHI-PROJECT-22H04928
[Presentation] A paleogenomic time travel to pre- and proto-historic Japan2022
- Author(s)
  Shigeki Nakagome
- Organizer
  TCD Asian Studies Lecture Series, Dublin, Ireland (Talk)
- Data Source
  KAKENHI-PROJECT-22H04928
[Presentation] More than a glimpse into the human past: genome-wide imputation of ancient genomes2022
- Author(s)
  Madeline Murray, Niall Cooke, Lara Cassidy, Daniel Bradley, Shigeki Nakagome
- Organizer
  Reconstructing the human past using ancient and modern genomics, Heidelberg, Germany (poster)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04928
[Presentation] Ancient human and pathogen genomics in the Japanese archipelago2022
- Author(s)
  Shigeki Nakagome
- Organizer
  Paleogenomics and Paleopathology - Future perspective -, Online (Talk)
- Data Source
  KAKENHI-PROJECT-22H04928
[Presentation] Paleogenomic analysis on human demography and adaptation in insular East Asia2022
- Author(s)
  Shigeki Nakagome
- Organizer
  ASHBi Seminar, Kyoto, Japan (Talk)
- Data Source
  KAKENHI-PROJECT-22H04928
[Presentation] Genomic insights into human past and health from a study of insular East Asia2022
- Author(s)
  Shigeki Nakagome
- Organizer
  TTMI Annual Conference, Dublin, Ireland (Talk)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04928
[Presentation] ヒト免疫システムの進化学的及び機能的プロファイリング2021
- Author(s)
  中込滋樹
- Organizer
  ゲノム医科学とバイオインフォマティクスの接点と集学研究
- Invited
- Data Source
  KAKENHI-PROJECT-19K06871
[Presentation] A time series of ancient genomes from the Japanese Archipelago2021
- Author(s)
  Cooke Niall P.、Mattiangeli Valeria、Cassidy Lara M.、Okazaki Kenji、Stokes Caroline A.、Onbe Shin、Hatakeyama Satoshi、Machida Kenichi、Kasai Kenji、Tomioka Naoto、Matsumoto Akihiko、Ito Masafumi、Kojima Yoshitaka、Bradley Daniel G.、Gakuhari Takashi、Nakagome Shigeki
- Organizer
  Human Evolution - From Fossils to Ancient and Modern Genomes
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-20H05129
[Presentation] Population genetics inference on the mode, tempo, and origins of natural selection2019
- Author(s)
  Shigeki Nakagome
- Organizer
  第21回日本進化学会
- Invited
- Data Source
  KAKENHI-PROJECT-19K06871
[Presentation] Determining the origin of natural selection in an admixed population2019
- Author(s)
  Cooke N., Bradley D.G., Nakagome S.
- Organizer
  Annual Meeting of the Society for Molecular Biology and Evolution 2019
- Data Source
  KAKENHI-PROJECT-19K06871
[Presentation] Inferring the model and onset of natural selection under varying population size from the site frequency spectrum and haplotype structure2019
- Author(s)
  Nakagome S., Hudson R., Di Rienzo A.
- Organizer
  Annual Meeting of the Society for Molecular Biology and Evolution 2019
- Data Source
  KAKENHI-PROJECT-19K06871

1. Gakuhari Takashi (70749530)

# of Collaborated Projects: 4 results

# of Collaborated Products: 1 results
2. 石谷孔司 (40826062)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. 和久大介 (60793578)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. 澤藤りかい (50814612)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. 中村誠一 (10261249)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. 伊藤伸幸 (40273205)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 市川彰 (90721564)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 松前ひろみ (00735681)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 金原正明 (10335466)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 本橋慶一 (10527542)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 岡崎健治 (10632937)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
12. 細川正人 (60722981)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 山本玲 (00581191)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 辻村太郎 (90741893)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 米田穣

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
16. 佐藤丈寛

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Nakagome Shigeki 中込 滋樹

Research Projects

Research Products

Co-Researchers

Elucidating the dynamics of the Copan dynasty in the Maya civilization through paleogenomics

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Population genomics of Jomon: elucidating adaptive evolution in ancient hunters and gatherers and its legacy in modern populationsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

"Shin" Paleogenomics Creates New Perspectives on the Utilization of Museum Materials

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

パレオゲノミクス解析プラットフォーム開発とその応用

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Identifying shifts in selective pressures driven by environmental and cultural changes: Population genomics modelling on ancient and modern MayaPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Applying temporal and spatial population genetics modelling for the origins of modern JapanesePrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Book] パレオゲノミクスで紐解く日本人集団の系譜2023

Author(s)

Total Pages

Publisher

Data Source

[Book] ポストGWAS時代の遺伝統計学 オミクス解析と機械学習でヒト疾患を俯瞰する2023

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Book] 医学のあゆみ：ヒトの進化と疾患 ─ 自然選択の標的とその副産物2020

Author(s)

Total Pages

Publisher

Data Source

[Journal Article] Medieval genomes from eastern Mongolia share a stable genetic profile over a millennium2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Genomic insights into a tripartite ancestry in the Southern Ryukyu Islands2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Ancient genomics reveals tripartite origins of Japanese populations2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations2020

Author(s)

Journal Title

DOI

NAID

Data Source

[Presentation] Insights into demography, selection, and pathogen loads2024

Author(s)

Organizer

Nakagome Shigeki 中込滋樹

[Book] ポストGWAS時代の遺伝統計学オミクス解析と機械学習でヒト疾患を俯瞰する2023