Shiraki Tomoya 白木知也

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SHIRAKI Tomoya 白木知也

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Researcher Number	40632352
Other IDs	https://orcid.org/0000-0003-0447-007X
Affiliation (Current)	2024: 国立遺伝学研究所, 遺伝形質研究系, 特任助教
Affiliation (based on the past Project Information) *help	2024: 国立遺伝学研究所, 遺伝形質研究系, 特任助教 2019: 国立遺伝学研究所, 遺伝形質研究系, 特任研究員 2018: 国立遺伝学研究所, 遺伝形質研究系, 博士研究員 2016 – 2017: 国立遺伝学研究所, 個体遺伝研究系, 博士研究員 2015 – 2016: 東京大学, 大学院理学系研究科, 特任助教
Review Section/Research Field	Principal Investigator Basic Section 45010:Genetics-related / Genetics/Chromosome dynamics Except Principal Investigator Animal physiology/Animal behavior
Keywords	Principal Investigator ゼブラフィッシュ / トランスジェニック / GAL4/UAS / 神経 / データベース / トランスクリプトーム / 視索前野 / ゲノム編集 / 発生・分化 / 発現制御 … More / 光受容分子 / 転写制御 / 発生 / 光受容 / 網膜 / 錐体 / 色覚 / 視覚 … More Except Principal Investigator 遺伝子改変マウス / 転写遺伝子 / 長期記憶 / 光生物 / シグナル・伝達 / 体内時計 / ユビキチン / リン酸化 / 転写因子 / サーカディアンリズム / シグナル伝達 / 光 / 網膜 / 脳・神経 / マイクロアレイ解析 / 桿体 / CRISPR/Cas9 / ゼブラフィッシュ / 錐体 / 棹体 / 転写制御 / 視細胞 / 光受容 / 視覚 Less

ゼブラフィッシュGAL4リソースを活用した神経機能の網羅的遺伝学的解析Principal Investigator
- Principal Investigator
  
  白木知也
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 45010:Genetics-related
- Research Institution
  National Institute of Genetics
ゼブラフィッシュにおける簡便な遺伝子破壊法の開発と脳機能解析への展開Principal Investigator
- Principal Investigator
  
  白木知也
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 45010:Genetics-related
- Research Institution
  National Institute of Genetics
Development of tetrachromatic retinal cone subtypes in zebrafishPrincipal Investigator
- Principal Investigator
  
  Shiraki Tomoya
- Project Period (FY)
  2016 – 2019
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Genetics/Chromosome dynamics
- Research Institution
  National Institute of Genetics
Molecular mechanisms underlying high photosensitivity of vertebrate photoreceptor cells
- Principal Investigator
  
  FUKADA Yoshitaka
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Animal physiology/Animal behavior
- Research Institution
  The University of Tokyo
Dissection of Mammalian Biological Clock System at a Molecular Level
- Principal Investigator
  
  Fukada Yoshitaka
- Project Period (FY)
  2012 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Research Field
  
  Animal physiology/Animal behavior
- Research Institution
  The University of Tokyo

All 2019 2018 2017 2016 2015 2014 2013 Other

All Journal Article Presentation

[Journal Article] Six6 and Six7 coordinately regulate expression of middle-wavelength opsins in zebrafish2019
- Author(s)
  Ogawa Y, Shiraki T, Asano Y, Muto A, Kawakami K, Suzuki Y, Kojima D, Fukada Y.
- Journal Title
  
  Proc Natl Acad Sci U S A.
  
  Volume: 116 (10) Issue: 10 Pages: 4651-4660
- DOI
  10.1073/pnas.1812884116
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07494, KAKENHI-PROJECT-15K07144, KAKENHI-PROJECT-17H06096, KAKENHI-PROJECT-16K20983
[Journal Article] A tRNA-based multiplex sgRNA expression system in zebrafish and its application to generation of transgenic albino fish.2018
- Author(s)
  Shiraki, T., and Kawakami, K.
- Journal Title
  
  Scientific reports
  
  Volume: 8 Issue: 1 Pages: 13386-13386
- DOI
  10.1038/s41598-018-31476-5
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-18H04988, KAKENHI-PROJECT-16K20983, KAKENHI-ORGANIZER-15H05935
[Journal Article] Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish.2015
- Author(s)
  Yohey Ogawa, Tomoya Shiraki, Daisuke Kojima, Yoshitaka Fukada
- Journal Title
  
  Proc. R. Soc. B
  
  Volume: 282 Issue: 1812 Pages: 20150659-20150659
- DOI
  10.1098/rspb.2015.0659
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-15K07144, KAKENHI-PROJECT-25650113
[Journal Article] Opsin Kinase Activities Characterize Light Responses of Rod and Cone Photoreceptors2013
- Author(s)
  白木知也，深田吉孝
- Journal Title
  
  Seibutsu Butsuri
  
  Volume: 53 Issue: 3 Pages: 145-148
- DOI
  10.2142/biophys.53.145
- NAID
  10031159066
- ISSN
  0582-4052, 1347-4219
- Language
  Japanese
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24227001
[Journal Article] Identification of non-visual photomotor response cells in the vertebrate hindbrain.2013
- Author(s)
  David Kokel, Timothy W. Dunn, Misha B. Ahrens, Rudiger Alshut, Chung Yan J. Cheung, Louis Saint-Amant, Giancarlo Bruni, Rita Mateus, Tjakko van Ham, Tomoya Shiraki, Yoshitaka Fukada, Daisuke Kojima, Jing-Ruey J. Yeh, Ralf Mikut, Johannes von Lintig, Florian Engert and Randall Peterson.
- Journal Title
  
  J. Neurosci.
  
  Volume: 33 Pages: 3834-3843
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24227001
[Presentation] ゼブラフィッシュにおける網膜から視索前野への光入力経路の解析2019
- Author(s)
  白木　知也、武藤彩、川上浩一
- Organizer
  日本動物学会第90回大会
- Data Source
  KAKENHI-PROJECT-16K20983
[Presentation] A tRNA-based multiple sgRNA expression system toward the development of a simple and efficient conditional gene knockout method in zebrafish2019
- Author(s)
  Tomoya Shiraki and Koichi Kawakami
- Organizer
  14th International Zebrafish Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K20983
[Presentation] A tRNA-based multiplex sgRNA expression system in zebrafish and its application to generation of transgenic albino fish2018
- Author(s)
  Tomoya Shiraki and Koichi Kawakami
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16K20983
[Presentation] A tRNA-based multiplex sgRNA expression system in zebrafish and its application to generation of transgenic albino fish2018
- Author(s)
  Tomoya Shiraki and Koichi Kawakami
- Organizer
  NIG International Symposium 2018 “Genome Editing and Functional Genomics”
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K20983
[Presentation] Generation of albino-transgenic zebrafish using tRNA-based multiplexed sgRNA expression2017
- Author(s)
  Tomoya Shiraki and Koichi Kawakami
- Organizer
  第23回小型魚類研究会
- Data Source
  KAKENHI-PROJECT-16K20983
[Presentation] Generation of transgenic-albino zebrafish using tRNA-based multiplexed sgRNA expression2017
- Author(s)
  Tomoya Shiraki and Koichi Kawakami
- Organizer
  International Workshop on Zebrafish Neural Circuits and Behavior
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K20983
[Presentation] アルビノ遺伝子組み換えゼブラフィッシュの作製2017
- Author(s)
  白木知也、川上浩一
- Organizer
  日本動物学会第88回大会
- Data Source
  KAKENHI-PROJECT-16K20983
[Presentation] 視細胞の機能分化を生み出す転写制御機構の解析2016
- Author(s)
  白木知也
- Organizer
  第19回日本光生物学協会年会
- Place of Presentation
  東京大学　山上会館　（東京）
- Data Source
  KAKENHI-PROJECT-16K20983
[Presentation] Identification and characterization of differentially expressed genes among ciliary type photoreceptor neurons in zebrafish.2015
- Author(s)
  Tomoya Shiraki, Yohey Ogawa, Daisuke Kojima, Yoshitaka Fukada
- Organizer
  AOCP 2015
- Place of Presentation
  Academia Sinica (Taiwan Taipei)
- Year and Date
  2015-11-17
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] ゼブラフィッシュにおける光受容関連遺伝子の発現を調節する転写制御因子の機能解析.2015
- Author(s)
  白木知也、小島大輔、深田吉孝
- Organizer
  日本動物学会大86回新潟大会
- Place of Presentation
  朱鷺メッセ（新潟県新潟市）
- Year and Date
  2015-09-19
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] ゼブラフィッシュ錐体オプシン遺伝子の発現制御.2015
- Author(s)
  小川洋平、白木知也、小島大輔、深田吉孝
- Organizer
  日本動物学会第 67 回関東支部大会
- Place of Presentation
  早稲田大学・先端生命医科学センター（東京都・新宿区）
- Year and Date
  2015-03-14
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] Transcriptional network for regulation of cone visual opsin genes in zebrafish.2015
- Author(s)
  Yohey Ogawa, Tomoya Shiraki, Daisuke Kojima, and Yoshitaka Fukada
- Organizer
  第40回日本比較生理内分泌学会大会、日本比較生理生化学会第37回大会合同大会
- Place of Presentation
  JMSアステールプラザ（広島県広島市）
- Year and Date
  2015-12-12
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] ゼブラフィッシュ幼生の体色変化を引き起こす網膜光受容体.2015
- Author(s)
  小島大輔、住川育子、松本翔、白木知也、深田吉孝
- Organizer
  日本動物学会大86回新潟大会
- Place of Presentation
  朱鷺メッセ（新潟県新潟市）
- Year and Date
  2015-09-19
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] Photoreceptors mediating background adaptation in zabrafish.2015
- Author(s)
  Daisuke Kojima, Ikuko Sumikawa, Sho Matsumoto, Tomoya Shiraki, Yoshitaka Fukada
- Organizer
  FASEB:Biology and Chemistry of Vision
- Place of Presentation
  Big SkyResort (Montana USA)
- Year and Date
  2015-06-15
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] Multiple types of retinal photoreceptors mediate background adaptation in larval zebrafish.2015
- Author(s)
  Daisuke Kojima, Ikuko Sumikawa, Sho Matsumoto, Tomoya Shiraki, Yoshitaka Fukada
- Organizer
  AOCP 2015
- Place of Presentation
  Academia Sinica (Taiwan Taipei)
- Year and Date
  2015-11-16
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] ゼブラフィッシュ緑色感受性視物質の遺伝子発現を支配するホメオボックス転写因子six7.2015
- Author(s)
  深田吉孝，小川洋平，白木知也，小島大輔
- Organizer
  視覚科学フォーラム第１９回研究会
- Place of Presentation
  ホテル福島グリーンパレス（福島県福島市）
- Year and Date
  2015-08-19
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] A transcription factor governing expression of cone opsin genes in zebrafish retina.2015
- Author(s)
  Yohey Ogawa, Tomoya Shiraki, Daisuke Kojima, Yoshitaka Fukada
- Organizer
  FASEB:Biology and Chemistry of Vision
- Place of Presentation
  Big SkyResort (Montana USA)
- Year and Date
  2015-06-17
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] Six3サブファミリーによるゼブラフィッシュ錐体オプシン遺伝子の発現制御.2014
- Author(s)
  小川洋平、白木知也、小島大輔、深田吉孝
- Organizer
  日本動物学会第85回仙台大会2014
- Place of Presentation
  東北大学川内北キャンパス（宮城県・仙台市）
- Year and Date
  2014-09-11
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] ゼブラフィッシュ桿体の分化・成熟過程を制御する転写調節機構.2014
- Author(s)
  白木知也、小島大輔、深田吉孝
- Organizer
  視覚科学フォーラム第18回研究会
- Place of Presentation
  前橋工科大学(群馬県・前橋市）
- Year and Date
  2014-08-18
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] Transcriptional Profiles of Ciliary Photoreceptor Neurons in Zebrafish.2014
- Author(s)
  Tomoya Shiraki, Daisuke Kojima, Yohey Ogawa, Yoshitaka Fukada
- Organizer
  11th International Conference on Zebrafish Dvelopment and Genetics
- Place of Presentation
  Madison(USA)
- Year and Date
  2014-06-27
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] ゼブラフィッシュにおける光受容細胞の機能的差異をもたらす転写ネットワークの解析.2014
- Author(s)
  白木知也、小島大輔、深田吉孝
- Organizer
  日本動物学会第85回仙台大会2014
- Place of Presentation
  東北大学川内北キャンパス（宮城県・仙台市）
- Year and Date
  2014-09-11
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] Gene expression profiles of ciliary photoreceptor neurons reveal a transcriptional network for photoreceptor differentiation in zebrafish.2013
- Author(s)
  Tomoya Shiraki, Yohey Ogawa, Daisuke Kojima, Yoshitaka Fukada
- Organizer
  日本比較生理生化学会第35回大会
- Place of Presentation
  イーグレひめじ（兵庫県・姫路市）
- Year and Date
  2013-07-13
- Data Source
  KAKENHI-PROJECT-24227001
[Presentation] Comparative gene expression profiling among ciliary photoreceptor neurons in zebrafish.2013
- Author(s)
  Tomoya Shiraki , Daisuke Kojima , Yohey Ogawa , Yoshitaka Fukada
- Organizer
  FASEB:Biology and Chemistry of Vision
- Place of Presentation
  Steamboat Springs (USA )
- Year and Date
  2013-06-12
- Data Source
  KAKENHI-PROJECT-24227001
[Presentation] Spectral sensitivity of light-induced body color change in larval zebrafish.2013
- Author(s)
  Daisuke Kojima, Ikuko Sumikawa, Sho Matsumoto, Tomoya Shiraki1, Yoshitaka Fukada
- Organizer
  日本比較生理生化学会第35回大会
- Place of Presentation
  イーグレひめじ（兵庫県）
- Data Source
  KAKENHI-PROJECT-24227001
[Presentation] 視細胞における錐体特異的な転写因子の機能解析.2013
- Author(s)
  小川洋平、白木知也、小島大輔、深田吉孝
- Organizer
  第36回日本神経科学大会, 第56回日本神経化学会大会, 第23回日本神経回路学会大会合同大会
- Place of Presentation
  国立京都国際会館(京都府・京都市）
- Year and Date
  2013-06-22
- Data Source
  KAKENHI-PROJECT-24227001
[Presentation] ゼブラフィッシュにおける視細胞分化機構の解析.2013
- Author(s)
  白木知也、小川洋平、小島大輔、深田吉孝
- Organizer
  視覚科学フォーラム第１７回研究会
- Place of Presentation
  立命館大学びわこ・くさつキャンパス（滋賀県・草津市）
- Year and Date
  2013-08-05
- Data Source
  KAKENHI-PROJECT-24227001
[Presentation] ゼブラフィッシュにおける視細胞分化機構の解析.
- Author(s)
  白木知也、小川洋平、小島大輔、深田吉孝
- Organizer
  視覚科学フォーラム第１７回研究会
- Place of Presentation
  立命館大学びわこ・くさつキャンパス（滋賀県）
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] Color sensitivity of light-induced body color change in larval zebrafish.
- Author(s)
  Daisuke Kojima, Ikuko Sumikawa, Sho Matsumoto, Tomoya Shiraki, Yoshitaka Fukada
- Organizer
  FASEB:Biology and Chemistry of Vision
- Place of Presentation
  スチームボートグランドホテル(米国コロラド州スチームボートスプリング市)
- Data Source
  KAKENHI-PROJECT-24227001
[Presentation] Transcriptional profiles of ciliary photoreceptor neurons in zebrafish.
- Author(s)
  Tomoya Shiraki, Daisuke Kojima and Yoshitaka Fukada
- Organizer
  第85回日本生化学会大会
- Place of Presentation
  マリンメッセ福岡（福岡県）
- Data Source
  KAKENHI-PROJECT-24227001
[Presentation] Gene expression profiles of ciliary photoreceptor neurons reveal a transcriptional network for photoreceptor differentiation in zebrafish.
- Author(s)
  Tomoya Shiraki, Yohey Ogawa, Daisuke Kojima, Yoshitaka Fukada
- Organizer
  日本比較生理生化学会第35回大会
- Place of Presentation
  イーグレ姫路（兵庫県）
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] 視細胞における錐体特異的な転写因子の機能解析.
- Author(s)
  小川洋平、白木知也、小島大輔、深田吉孝
- Organizer
  第56回日本神経化学会大会, 第23回日本神経回路学会大会合同大会
- Place of Presentation
  国立京都国際会館（京都府)
- Data Source
  KAKENHI-PROJECT-25650113
[Presentation] Comparative gene expression profiling among ciliary photoreceptor neurons in zebrafish.
- Author(s)
  Tomoya Shiraki, Daisuke Kojima , Yohey Ogawa , Yoshitaka Fukada
- Organizer
  FASEB:Biology and Chemistry of Vision
- Place of Presentation
  スチームボートグランドホテルスチームボートスプリング市（コロラド州米国）
- Data Source
  KAKENHI-PROJECT-25650113

1. FUKADA Yoshitaka (80165258)

# of Collaborated Projects: 2 results

# of Collaborated Products: 25 results
2. KOJIMA Daisuke (60376530)

# of Collaborated Projects: 1 results

# of Collaborated Products: 9 results
3. SHIMIZU Kimiko (50451828)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. YOSHITANE Hikari (70569920)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. TORII Masaki (10586407)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. TERAJIMA Hideki

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. MUTO Akira

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
8. OGAWA Yohey

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
9. 川上浩一

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Shiraki Tomoya 白木 知也

SHIRAKI Tomoya 白木 知也

Research Projects

Research Products

Co-Researchers

ゼブラフィッシュGAL4リソースを活用した神経機能の網羅的遺伝学的解析Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

ゼブラフィッシュにおける簡便な遺伝子破壊法の開発と脳機能解析への展開Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of tetrachromatic retinal cone subtypes in zebrafishPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Molecular mechanisms underlying high photosensitivity of vertebrate photoreceptor cells

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Dissection of Mammalian Biological Clock System at a Molecular Level

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Six6 and Six7 coordinately regulate expression of middle-wavelength opsins in zebrafish2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A tRNA-based multiplex sgRNA expression system in zebrafish and its application to generation of transgenic albino fish.2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish.2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Opsin Kinase Activities Characterize Light Responses of Rod and Cone Photoreceptors2013

Author(s)

Journal Title

DOI

NAID

ISSN

Language

Data Source

[Journal Article] Identification of non-visual photomotor response cells in the vertebrate hindbrain.2013

Author(s)

Journal Title

Data Source

[Presentation] ゼブラフィッシュにおける網膜から視索前野への光入力経路の解析2019

Author(s)

Organizer

Data Source

[Presentation] A tRNA-based multiple sgRNA expression system toward the development of a simple and efficient conditional gene knockout method in zebrafish2019

Author(s)

Organizer

Data Source

[Presentation] A tRNA-based multiplex sgRNA expression system in zebrafish and its application to generation of transgenic albino fish2018

Author(s)

Organizer

Data Source

[Presentation] A tRNA-based multiplex sgRNA expression system in zebrafish and its application to generation of transgenic albino fish2018

Author(s)

Organizer

Data Source

[Presentation] Generation of albino-transgenic zebrafish using tRNA-based multiplexed sgRNA expression2017

Author(s)

Shiraki Tomoya 白木知也

SHIRAKI Tomoya 白木知也