Ushio Masayuki 潮雅之

Researcher Number	40722814
Other IDs
Affiliation (Current)	2025: 龍谷大学, 公私立大学の部局等, 研究員
Affiliation (based on the past Project Information) *help	2022 – 2023: 龍谷大学, 公私立大学の部局等, 研究員 2019 – 2022: 京都大学, 白眉センター, 特定准教授 2017: 京都大学, 生態学研究センター, 科学技術振興機構さきがけ専任研究者(京都大学生態学研究センター連携研究員) 2016: 京都大学, 生態学研究センター, 科学技術振興機構さきがけ専任研究者 2016: 京都大学, 生態学研究センター, 科学技術振興機構さきがけ専任研究者(京都 2014 – 2015: 龍谷大学, 科学技術共同研究センター, 博士研究員
Review Section/Research Field	Principal Investigator Basic Section 45040:Ecology and environment-related / Ecology/Environment Except Principal Investigator Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields / Basic Section 45030:Biodiversity and systematics-related / Ecology/Environment
Keywords	Principal Investigator ツボカビ / 非線形時系列解析 / 宿主-寄生者系 / 生態系制御 / 国際研究者交流 / 微生物群集植物 / 大量シーケンサー / 植物土壌相互作用 / 病原菌 / 森林生態系 / 微生物群集 … More Except Principal Investigator … More メタバーコーディング / 魚類群集 / 生物多様性 / 時系列解析 / 種子 / 栽培植物 / 細菌 / 微生物 / 栽培化 / アンプリコンシーケンシング / ツルマメ / ダイズ / 微生物叢 / 群集 / 魚類 / 地理的構造 / 変動様式 / 多地点・高頻度観測 / 時空間分布 / ビッグデータ / 多地点高頻度調査 / 時空間動態 / 多様性分析 / 黒潮 / 房総半島 / 時空間分析 / 環境DNAメタバーコーディング / モニタリング / 種間関係 / MiFish法 / 環境DNA / 非線形動態解析 / 群集ネットワーク / 種間相互作用 / 時系列データ解析 / 生態学 / 安定性解析 / 複雑ネットワーク Less

栽培化は種子微生物叢をどう変化させたか：東アジア起源のダイズを材料とした検討
- Principal Investigator
  
  酒井章子
- Project Period (FY)
  2022 – 2026
- Research Category
  
  Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))
- Review Section
  
  Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
- Research Institution
  Research Institute for Humanity and Nature
  Kyoto University
Development of a framework for controlling aquatic ecosystem dynamics using host-parasite systems as a model systemPrincipal Investigator
- Principal Investigator
  
  Ushio Masayuki
- Project Period (FY)
  2020 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 45040:Ecology and environment-related
- Research Institution
  Ryukoku University
  Kyoto University
Unraveling variation patterns and the formation/maintenance mechanisms of fish community structures through multi-site, high-frequency environmental DNA sampling
- Principal Investigator
  
  Miya Masaki
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 45030:Biodiversity and systematics-related
- Research Institution
  Natural History Museum and Institute, Chiba
Reconstructing community networks based on time-series analysis of populations
- Principal Investigator
  
  Kondoh Michio
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Ecology/Environment
- Research Institution
  Ryukoku University
Identification and quantification of microbial pathogens that drive plant-soil feedbacks in a forest ecosystemPrincipal Investigator
- Principal Investigator
  
  Ushio Masayuki
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Ecology/Environment
- Research Institution
  Kyoto University
  Ryukoku University

All 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 Other

All Journal Article Presentation

[Journal Article] An ecological network approach for detecting and validating influential organisms for rice growth2023
- Author(s)
  Ushio Masayuki、Saito Hiroki、Tojo Motoaki、Nagano Atsushi J
- Journal Title
  
  eLife
  
  Volume: 12
- DOI
  10.7554/elife.87202
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03323
[Journal Article] Computational capability of ecological dynamics2023
- Author(s)
  Ushio Masayuki、Watanabe Kazufumi、Fukuda Yasuhiro、Tokudome Yuji、Nakajima Kohei
- Journal Title
  
  Royal Society Open Science
  
  Volume: 10 Issue: 4 Pages: 221614-221614
- DOI
  10.1098/rsos.221614
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-18H05472, KAKENHI-PROJECT-20H03323
[Journal Article] Temperature sensitivity of the interspecific interaction strength of coastal marine fish communities2023
- Author(s)
  Masayuki Ushio, Testuya Sado, Takehiko Fukuchi, Sachia Sasano, Reiji Masuda, Yutaka Osada, Masaki Miya
- Journal Title
  
  eLife
  
  Volume: 12
- DOI
  10.7554/elife.85795
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K15171, KAKENHI-PROJECT-20H03323, KAKENHI-PROJECT-23K23954
[Journal Article] An efficient early‐pooling protocol for environmental <scp>DNA</scp> metabarcoding2022
- Author(s)
  Ushio Masayuki、Furukawa Saori、Murakami Hiroaki、Masuda Reiji、Nagano Atsushi J.
- Journal Title
  
  Environmental DNA
  
  Volume: 4 Issue: 6 Pages: 1212-1228
- DOI
  10.1002/edn3.337
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H05641, KAKENHI-PROJECT-19H03031, KAKENHI-PROJECT-21K14899, KAKENHI-PROJECT-20H03323
[Journal Article] An efficient early-pooling protocol for environmental DNA metabarcoding2022
- Author(s)
  Ushio Masayuki、Furukawa Saori、Murakami Hiroaki、Masuda Reiji、Nagano Atsushi J.
- Journal Title
  
  bioRxiv
  
  Volume: 2022.02.15.480497 Pages: 1-19
- DOI
  10.1101/2022.02.15.480497
- Open Access
- Data Source
  KAKENHI-PROJECT-20H03323
[Journal Article] Interaction capacity as a potential driver of community diversity2022
- Author(s)
  Ushio Masayuki
- Journal Title
  
  Proceedings of the Royal Society B: Biological Sciences
  
  Volume: 289 Issue: 1969 Pages: 20212690-20212690
- DOI
  10.1098/rspb.2021.2690
- NAID
  120007192873
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H03323
[Journal Article] Computational capability of ecological dynamics2021
- Author(s)
  Ushio Masayuki、Watanabe Kazufumi、Fukuda Yasuhiro、Tokudome Yuji、Nakajima Kohei
- Journal Title
  
  bioRxiv
  
  Volume: 2021.09.15.460556 Pages: 1-22
- DOI
  10.1101/2021.09.15.460556
- Open Access
- Data Source
  KAKENHI-PROJECT-20H03323
[Journal Article] Evaluating intraspecific genetic diversity using environmental DNA and denoising approach: A case study using tank water2019
- Author(s)
  Tsuji S , Miya M , Ushio M , Satoh H , Minamoto T , Yamanaka H
- Journal Title
  
  Environmental DNA
  
  Volume: 2 Pages: 42-52
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19H03291
[Journal Article] Fluctuating interaction network and time-varying stability of a natural fish community2018
- Author(s)
  Ushio Masayuki、Hsieh Chih-hao、Masuda Reiji、Deyle Ethan R、Ye Hao、Chang Chun-Wei、Sugihara George、Kondoh Michio
- Journal Title
  
  Nature
  
  Volume: 554 Issue: 7692 Pages: 360-363
- DOI
  10.1038/nature25504
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K14610
[Journal Article] Plant-soil feedbacks and the dominance of conifers in a tropical montane forest in Borneo2017
- Author(s)
  Masayuki Ushio, Shin-ichiro Aiba, Yayoi Takeuchi, Yoshiko Iida, Shunsuke Matsuoka, Rimi Repin, Kanehiro Kitayama
- Journal Title
  
  Ecological Monographs
  
  Volume: 87 Issue: 1 Pages: 105-129
- DOI
  10.1002/ecm.1236
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26840145
[Journal Article] 陸域生態系において球果類の優占度を決定するメカニズム2017
- Author(s)
  相場慎一郎、宮本和樹、潮雅之、青柳亮太、澤田佳美
- Journal Title
  
  日本生態学会誌
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26840145
[Journal Article] マキ科・ナンヨウスギ科の根の形態・菌根菌・窒素固定活性2017
- Author(s)
  潮雅之
- Journal Title
  
  日本生態学会誌
  
  Volume: 印刷中
- NAID
  130006246749
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26840145
[Journal Article] Empirical dynamic modeling for beginners2017
- Author(s)
  Chang Chun-Wei、Ushio Masayuki、Hsieh Chih-hao
- Journal Title
  
  Ecological Research
  
  Volume: 32 Issue: 6 Pages: 785-796
- DOI
  10.1007/s11284-017-1469-9
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K14610
[Journal Article] Linkage of root physiology and morphology as an adaptation to soil phosphorus impoverishment in tropical montane forests2015
- Author(s)
  Ushio M, Fujiki Y, Hidaka A, Kitayama K
- Journal Title
  
  Functional Ecology
  
  Volume: 29 Issue: 9 Pages: 1235-1245
- DOI
  10.1111/1365-2435.12424
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26840145
[Journal Article] Microbial communities on flower surfaces act as signatures of pollinator visitation2015
- Author(s)
  Ushio M, Yamasaki E, Takasu H, Nagano AJ, Fujinaga S, Honjo MN, Ikemoto M, Sakai S & Kudoh H
- Journal Title
  
  Scientific Reports
  
  Volume: 5 Issue: 1 Pages: 8695-8695
- DOI
  10.1038/srep08695
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26221106, KAKENHI-PROJECT-26840145
[Journal Article] High-throughput sequencing shows inconsistent results with a microscope-based analysis of the soil prokaryotic community2014
- Author(s)
  Ushio M, Makoto K, Klaminder J, Takasu H, Nakano S-I
- Journal Title
  
  Soil Biology & Biochemistry
  
  Volume: 76 Pages: 53-60
- DOI
  10.1016/j.soilbio.2014.05.010
- NAID
  120005456002
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26840145
[Presentation] Temperature sensitivity of the interspecific interaction strength of coastal marine fish communities2024
- Author(s)
  Masayuki Ushio、Testuya Sado、Takehiko Fukuchi、Sachia Sasano、Reiji Masuda、Yutaka Osada、Masaki Miya
- Organizer
  第71回日本生態学会
- Data Source
  KAKENHI-PROJECT-20H03323
[Presentation] Temperature sensitivity of the interspecific interaction strength of coastal marine fish communities2023
- Author(s)
  Masayuki Ushio、Testuya Sado、Takehiko Fukuchi、Sachia Sasano、Reiji Masuda、Yutaka Osada、Masaki Miya
- Organizer
  The eDNA Society International Meeting 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03323
[Presentation] 生態系の情報処理能力の定量化とその利用に向けた挑戦2022
- Author(s)
  潮雅之
- Organizer
  統数研統計思考院ワークショップ「数学を用いる生物学」
- Invited
- Data Source
  KAKENHI-PROJECT-20H03323
[Presentation] 環境DNAモニタリング技術の開発と応用: サンプリング・ラボ実験から配列解析・統計解析まで2022
- Author(s)
  潮雅之
- Organizer
  定量生物学の会年会
- Invited
- Data Source
  KAKENHI-PROJECT-20H03323
[Presentation] Environmental DNA and statistical modeling enable monitoring and forecasting of complex aquatic ecosystem dynamics2022
- Author(s)
  Masayuki Ushio
- Organizer
  2022 Hong Kong Inter-University Postgraduate Symposium in Life Science
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03323
[Presentation] Biodiversity monitoring, time series analysis, and the sustainability of ecosystem and society2022
- Author(s)
  潮雅之
- Organizer
  2022年白眉プロジェクト年次報告会
- Invited
- Data Source
  KAKENHI-PROJECT-20H03323
[Presentation] テトラヒメナ個体群が持つ情報処理能力の定量化とその利用2022
- Author(s)
  潮雅之
- Organizer
  第69回日本生態学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-20H03323
[Presentation] Ecological Reservoir Computing: 微生物による近未来予測2021
- Author(s)
  潮雅之
- Organizer
  京都大学生態学研究センター共同利用ワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-20H03323
[Presentation] 環境DNAメタバーコーディングのライブラリ調整迅速化・省力化に向けて2021
- Author(s)
  潮雅之
- Organizer
  第4回山口大学・環境DNA研究センターシンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-20H03323
[Presentation] 生物群集ネットワークの多様性と動態を説明する相互作用容量仮説2020
- Author(s)
  潮雅之
- Organizer
  ネットワーク科学セミナー2020
- Invited
- Data Source
  KAKENHI-PROJECT-20H03323
[Presentation] 群集生態学の限界とデータ駆動型アプローチによる解決2018
- Author(s)
  近藤倫生, 川津一隆, 長田穣, 京極大助, 潮雅之
- Organizer
  第65回日本生態学会大会
- Data Source
  KAKENHI-PROJECT-15K14610
[Presentation] 「行動」と「生態」をつなぐ：長期昆虫群集動態の時系列解析2018
- Author(s)
  川津一隆・潮雅之・Van Veen Frank・近藤倫生,
- Organizer
  第65回日本生態学会大会
- Data Source
  KAKENHI-PROJECT-15K14610
[Presentation] マキ科針葉樹の菌根菌・栄養塩獲得機構とボルネオ熱帯山地林の生態系動態2016
- Author(s)
  潮雅之
- Organizer
  森林生物学特別セミナー
- Place of Presentation
  京都府京都市・京都大学農学研究科
- Invited
- Data Source
  KAKENHI-PROJECT-26840145
[Presentation] Identifying triggers of general flowering in a tropical lowland forest in Borneo2016
- Author(s)
  Ushio M
- Organizer
  ATBC2016 (Association for Tropical Biology and Conservation)
- Place of Presentation
  Montpellier, France
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K14610
[Presentation] Environmental triggers of general flowering in a tropical lowland forest in Borneo2016
- Author(s)
  Ushio M
- Organizer
  Annual Meeting of Japan Society for Mathematical Biology
- Place of Presentation
  九州大学, 福岡
- Data Source
  KAKENHI-PROJECT-15K14610
[Presentation] 野外生態系での変動する相互作用強度と局所安定性の定量化2016
- Author(s)
  潮雅之
- Organizer
  第63回日本生態学会
- Place of Presentation
  仙台国際センター（仙台）
- Year and Date
  2016-03-20
- Data Source
  KAKENHI-PROJECT-15K14610
[Presentation] マキ科針葉樹の菌根菌・栄養塩獲得機構とボルネオ熱帯山地林の生態系動態2016
- Author(s)
  潮雅之、相場慎一郎、竹内やよい、飯田佳子、松岡俊将、北山兼弘
- Organizer
  第63回日本生態学会
- Place of Presentation
  仙台国際センター
- Year and Date
  2016-03-22
- Invited
- Data Source
  KAKENHI-PROJECT-26840145
[Presentation] Applications of nonlinear time series analysis to microbial ecology studies2015
- Author(s)
  Masayuki Ushio, Chih-Hao Hsieh, Reiji Masuda, Michio Kondoh
- Organizer
  Annual Meeting of Japan Society for Microbial Ecology 2015
- Place of Presentation
  亀城プラザ（土浦）
- Year and Date
  2015-10-19
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K14610
[Presentation] Linkage of root physiology and morphology as an adaptation to soil phosphorus impoverishment in tropical montane forests2015
- Author(s)
  Ushio M, Fujiki Y, Hidaka A, Kitayama K
- Organizer
  Japan Geoscience Union (JPGU) 2015
- Place of Presentation
  幕張メッセ
- Year and Date
  2015-05-27
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26840145
[Presentation] Interspecific interactions, diversity and the stability of a natural fish community2015
- Author(s)
  Masayuki Ushio, Chih-Hao Hsieh, Reiji Masuda, Ethan Deyle, Hao Ye, Chun-Wei Chang, George Sugihara, Michio Kondoh
- Organizer
  International Workshop on Development and Applications of Empirical Dynamic Modeling and Forecasting for Nonlinear Systems
- Place of Presentation
  National Taiwan University（台湾、台北）
- Year and Date
  2015-09-16
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K14610
[Presentation] Reconstructing plant-pollinator networks using microbial fingerprint on insect body surfaces2014
- Author(s)
  Ushio M
- Organizer
  Evolutionary Community Ecology 2014
- Place of Presentation
  Lecture Hall, Science Seminar House, Kyoto University, Kyoto
- Year and Date
  2014-09-02
- Invited
- Data Source
  KAKENHI-PROJECT-26840145
[Presentation] Linking soil phosphorus availability, root properties and leaf phosphorus concentrations in tropical montane forests
- Author(s)
  Ushio M, Fujiki Y, Hidaka A, Kitayama K
- Organizer
  第６２回日本生態学会
- Place of Presentation
  鹿児島大学、鹿児島市
- Year and Date
  2015-03-18 – 2015-03-22
- Data Source
  KAKENHI-PROJECT-26840145

1. Kondoh Michio (30388160)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
2. Miya Masaki (30250137)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
3. 鏡味麻衣子 (20449250)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 酒井章子 (30361306)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. 古川沙央里 (10877319)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. Nagano Atushi J.

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
7. 益田玲爾

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
8. 中嶋浩平

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
9. 長田穣

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
10. 工藤洋

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Ushio Masayuki 潮 雅之

Research Projects

Research Products

Co-Researchers

栽培化は種子微生物叢をどう変化させたか：東アジア起源のダイズを材料とした検討

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of a framework for controlling aquatic ecosystem dynamics using host-parasite systems as a model systemPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Unraveling variation patterns and the formation/maintenance mechanisms of fish community structures through multi-site, high-frequency environmental DNA sampling

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Reconstructing community networks based on time-series analysis of populations

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Identification and quantification of microbial pathogens that drive plant-soil feedbacks in a forest ecosystemPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] An ecological network approach for detecting and validating influential organisms for rice growth2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Computational capability of ecological dynamics2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Temperature sensitivity of the interspecific interaction strength of coastal marine fish communities2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] An efficient early‐pooling protocol for environmental <scp>DNA</scp> metabarcoding2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] An efficient early-pooling protocol for environmental DNA metabarcoding2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Interaction capacity as a potential driver of community diversity2022

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Computational capability of ecological dynamics2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Evaluating intraspecific genetic diversity using environmental DNA and denoising approach: A case study using tank water2019

Author(s)

Journal Title

Data Source

[Journal Article] Fluctuating interaction network and time-varying stability of a natural fish community2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Plant-soil feedbacks and the dominance of conifers in a tropical montane forest in Borneo2017

Ushio Masayuki 潮雅之