Park Sung-Joon 朴聖俊

Researcher Number	40759411
Other IDs	https://orcid.org/0000-0002-1774-9590
Affiliation (Current)	2025: 東京大学, 医科学研究所, 准教授
Affiliation (based on the past Project Information) *help	2020 – 2024: 東京大学, 医科学研究所, 准教授 2017 – 2019: 東京大学, 医科学研究所, 特任講師
Review Section/Research Field	Principal Investigator Basic Section 43060:System genome science-related / Life / Health / Medical informatics Except Principal Investigator Basic Section 57040:Regenerative dentistry and dental engineering-related / Transformative Research Areas, Section (III)
Keywords	Principal Investigator バイオインフォマティクス / 染色体高次構造 / 遺伝子転写制御 / ゲノム高次構造 / 遺伝子転写モデル / 網羅的配列解読 / 次世代シークエンシング / コンタミネーション Except Principal Investigator 抗炎症作用 / 創傷治癒作用 … More / 創傷治癒 / miRNA / 間葉系幹細胞 / 再生医療 / エクソソーム / Brd / Hexim / Aff4 / Brd4 / NKAP / Cbx1 / 転写制御ネットワーク / 転写伸長 / Hi-C / コヒーシンローダー / コヒーシン / 希少疾患 Less

Analysis of the mechanism of wound healing and anti-inflammatory action by mesenchymal stem cell exosomes
- Principal Investigator
  
  岩田隆紀
- Project Period (FY)
  2022 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 57040:Regenerative dentistry and dental engineering-related
- Research Institution
  Tokyo Medical and Dental University
Developing computational methods for quantitative analysis of 3D transcriptional domainPrincipal Investigator
- Principal Investigator
  
  Park Sung-Joon
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  The University of Tokyo
Genomic modalities of development and differentiation and elucidation of disease mechanisms by their malfunction
- Principal Investigator
  
  白髭克彦
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  The University of Tokyo
染色体構造データベースを利用した転写制御のモデリングPrincipal Investigator
- Principal Investigator
  
  朴聖俊
- Project Period (FY)
  2018 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  The University of Tokyo
Developing a computational method for microbial contaminant detection and functional inference using next-generation sequencing dataPrincipal Investigator
- Principal Investigator
  
  Park Sung-Joon
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  The University of Tokyo

All 2024 2023 2021 2020 2019 2018 2017

All Journal Article Presentation

[Journal Article] A computational approach for deciphering the interactions between proximal and distal gene regulators in GC B-cell response2024
- Author(s)
  Sung-Joon Park* and Kenta Nakai
- Journal Title
  
  NAR Genomics and Bioinformatics lqae050
  
  Volume: -
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-20H05940
[Journal Article] Genome-wide ATAC-see screening identifies TFDP1 as a modulator of global chromatin accessibility2024
- Author(s)
  Ishii Satoko、Kakizuka Taishi、Park Sung-Joon、Tagawa Ayako、Sanbo Chiaki、Tanabe Hideyuki、Ohkawa Yasuyuki、Nakanishi Mahito、Nakai Kenta、Miyanari Yusuke
- Journal Title
  
  Nature Genetics
  
  Volume: 56 Issue: 3 Pages: 473-482
- DOI
  10.1038/s41588-024-01658-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K19275, KAKENHI-PUBLICLY-22H04676, KAKENHI-PLANNED-20H05940, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23H00372
[Journal Article] Anti-inflammatory effects of cold atmospheric plasma irradiation on the THP-1 human acute monocytic leukemia cell line2023
- Author(s)
  Hirasawa Ito、Odagiri Haruka、Park Giri、Sanghavi Rutvi、Oshita Takaya、Togi Akiko、Yoshikawa Katsunori、Mizutani Koji、Takeuchi Yasuo、Kobayashi Hiroaki、Katagiri Sayaka、Iwata Takanori、Aoki Akira
- Journal Title
  
  PLOS ONE
  
  Volume: 18 Issue: 10 Pages: 1-15
- DOI
  10.1371/journal.pone.0292267
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K09971, KAKENHI-PROJECT-21K19590, KAKENHI-PROJECT-20H03863, KAKENHI-PROJECT-23K24531
[Journal Article] A semi-supervised deep learning approach for predicting the functional effects of genomic non-coding variations2021
- Author(s)
  Hao Jia, Sung-Joon Park, Kenta Nakai
- Journal Title
  
  BMC Bioinformatics
  
  Volume: -
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06606
[Journal Article] Characterizing promoter and enhancer sequences by a deep learning method2021
- Author(s)
  Xin Zeng, Sung-Joon Park and Kenta Nakai
- Journal Title
  
  Frontiers in Genetics
  
  Volume: 12 Pages: 681259-681259
- DOI
  10.3389/fgene.2021.681259
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-20H05940, KAKENHI-PROJECT-20K06606
[Journal Article] Existence and possible roles of independent non-CpG methylation in the mammalian brain2020
- Author(s)
  Lee Jong-Hun、Saito Yutaka、Park Sung-Joon、Nakai Kenta
- Journal Title
  
  DNA Research
  
  Volume: 27 Issue: 4
- DOI
  10.1093/dnares/dsaa020
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K06502, KAKENHI-PROJECT-20K06606, KAKENHI-PROJECT-19K20409, KAKENHI-PLANNED-17H06410
[Journal Article] Existence and possible roles of independent non-CpG methylation in mammalian brain2020
- Author(s)
  Lee Jong-Hun, Saito Yutaka, Park Sung-Joon, Nakai Kenta
- Journal Title
  
  Research Square (preprint)
  
  Volume: -
- DOI
  10.21203/rs.2.22195/v1
- Open Access
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Journal Article] HHEX promotes myeloid transformation in cooperation with mutant ASXL12020
- Author(s)
  Reina Takeda, Shuhei Asada, Sung-Joon Park, Akihiko Yokoyama, Hans Becker, Akinori Kanai, Valeria Visconte, Courtney Hershberger, Yasutaka Hayashi, Taishi Yonezawa, Moe Tamura, Tsuyoshi Fukushima, Yosuke Tanaka, Tomofusa Fukuyama, Akiko Matsumoto, Satoshi Yamasaki, Kenta Nakai, Satoshi Yamazaki, Toshiya Inaba et al.
- Journal Title
  
  Blood
  
  Volume: -
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Journal Article] Genome-Wide Scanning of Gene Expression2019
- Author(s)
  Sung-Joon Park
- Journal Title
  
  Encyclopedia of Bioinformatics and Computational Biology
  
  Volume: 3 Pages: 452-462
- DOI
  10.1016/b978-0-12-809633-8.20132-5
- ISBN
  9780128114322
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K00396
[Journal Article] Broad Heterochromatic Domains Open in Gonocyte Development Prior to De Novo DNA Methylation2019
- Author(s)
  Yamanaka Soichiro、Nishihara Hidenori、Toh Hidehiro、Eijy Nagai Luis Augusto、Hashimoto Kosuke、Park Sung-Joon、Shibuya Aoi、Suzuki Ana Maria、Tanaka Yujiro、Nakai Kenta、Carninci Piero、Sasaki Hiroyuki、Siomi Haruhiko
- Journal Title
  
  Developmental Cell
  
  Volume: 51 Issue: 1 Pages: 21-34
- DOI
  10.1016/j.devcel.2019.07.023
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K06616, KAKENHI-PUBLICLY-18H04710, KAKENHI-PLANNED-19H05753
[Journal Article] Analyzing the 3D chromatin organization coordinating with gene expression regulation in B-cell lymphoma2019
- Author(s)
  Luis A. E. Nagai, Sung-Joon Park, and Kenta Nakai
- Journal Title
  
  BMC Medical Genomics
  
  Volume: 11 Issue: S7 Pages: 127-127
- DOI
  10.1186/s12920-018-0437-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K00397, KAKENHI-PUBLICLY-18H04710
[Journal Article] A systematic sequencing-based approach for microbial contaminant detection and functional inference.2019
- Author(s)
  Park SJ, Onizuka S, Seki M, Suzuki Y, Iwata T, Nakai K.
- Journal Title
  
  BMC Biology
  
  Volume: 13 Issue: 1 Pages: 72-72
- DOI
  10.1186/s12915-019-0690-0
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K19056, KAKENHI-PROJECT-17K00396, KAKENHI-PROJECT-18H02985
[Presentation] Meta co-expression analysis of genetic heterogeneity in GBM using single-cell RNA-seq data2021
- Author(s)
  Taisuke Hori, Sung-Joon Park and Kenta Nakai
- Organizer
  生命医薬情報学連合大会 (IIBMP 2021)
- Data Source
  KAKENHI-PROJECT-20K06606
[Presentation] Analyzing the impact of inter-chromosomal interactions on B cell development by linear regression modeling2020
- Author(s)
  Sung-Joon Park
- Organizer
  生命医薬情報学連合大会 (IIBMP 2020)
- Data Source
  KAKENHI-PROJECT-20K06606
[Presentation] A Semi-supervised Deep Learning Approach for Predicting the Functional Effects of Genomic Non-coding Variations2020
- Author(s)
  Hao Jia, Sung-Joon Park, Kenta Nakai
- Organizer
  The 19th International Conference on Bioinformatics (InCoB 2020)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K06606
[Presentation] Characterizing Promoter and Enhancer Sequences by a Deep Learning Method2020
- Author(s)
  Xin Zeng, Sung-Joon Park, Kenta Nakai
- Organizer
  The 19th International Conference on Bioinformatics (InCoB 2020)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K06606
[Presentation] 歯根膜組織由来間葉系幹細胞シートによる歯周組織再生2020
- Author(s)
  鬼塚理, 朴聖俊, 貝淵信之, 妻沼有香, 安藤智博, 中井謙太, 岩田隆紀
- Organizer
  第19回日本再生医療学会総会
- Data Source
  KAKENHI-PROJECT-17K00396
[Presentation] Co-expression network analysis of E3 ligase genes in embryonic stem cells and cell fate specification2020
- Author(s)
  Darina Obukhova, Sung-Joon Park, Kenta Nakai
- Organizer
  生命医薬情報学連合大会 (IIBMP 2020)
- Data Source
  KAKENHI-PROJECT-20K06606
[Presentation] Genome-wide chromatin structural analysis reveals inter-chromosomal translocations in B-cell lymphoma cell line2019
- Author(s)
  Luis AE Nagai, Sung-Joon Park and Kenta Nakai
- Organizer
  The Biology of Genomes
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] 脂肪由来幹細胞の運命決定と分化制御に関する時空間特異的ヒストン修飾のin-silico特定2019
- Author(s)
  山谷恭代, 朴聖俊, 中井謙太
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] Analyzing the 3D Chromatin Organization Coordinating with Gene Expression Regulation in B-cell Lymphoma2019
- Author(s)
  Luis Augusto Eijy Nagai, Sung-Joon Park and Kenta Nakai
- Organizer
  第8回生命医薬情報学連合大会（IIBMP2019）
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] OpenContami: A Web-based Application for Detecting Microbial Contaminants in Next-generation Sequencing2019
- Author(s)
  Sung-Joon Park, Satoru Onizuka, Masahide Seki, Yutaka Suzuki, Takanori Iwata and Kenta Nakai
- Organizer
  第8回生命医薬情報学連合大会
- Data Source
  KAKENHI-PROJECT-17K00396
[Presentation] Profiling microbial contamination by exploiting host-unmapped NGS reads2019
- Author(s)
  Sung-Joon Park and Kenta Nakai
- Organizer
  Revolutionizing Next-Generation Sequencing 2019 (RNGS19)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00396
[Presentation] Regression-based promoter modeling with local 3D chromatin structure2019
- Author(s)
  Sung-Joon Park
- Organizer
  CHROMOSOME DYNAMICS (An international symposium on chromatin and chromosome stability)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] Host-unmapped NGS reads shape the prevalence of microbial contamination2019
- Author(s)
  Sung-Joon Park and Kenta Nakai
- Organizer
  The Biology of Genomes
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00396
[Presentation] マウス胎仔期生殖細胞におけるクロマチンリプログラミング2019
- Author(s)
  山中総一郎, 西原秀典, 藤英博, Luis Augusto Eijy Nagai, 橋本浩介, 朴聖俊, 渋谷あおい, Ana Maria Suzuki, 田中悠二郎, 中井謙太, Piero Carninci, 佐々木裕之, 塩見春彦
- Organizer
  第21回日本RNA学会年会
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] 脂肪由来幹細胞の分化制御に働くエピジェネティック因子のin-silico同定2019
- Author(s)
  山谷恭代, 朴聖俊, 中井謙太
- Organizer
  第8回生命医薬情報学連合大会（IIBMP2019）
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] Genome-wide chromatin structural analysis reveals inter-chromosomal translocations in B-cell lymphoma2019
- Author(s)
  Luis A.E. Nagai, Sung-Joon Park, Kenta Nakai
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] OpenLooper: A web-based platform for managing multi-layered NGS data2018
- Author(s)
  Sung-Joon Park and Kenta Nakai
- Organizer
  生命医薬情報学連合大会 (IIBMP2018)
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] DNAヒドロキシメチル化とヒストンH4K8アセチル化によるヒト多能性幹細胞遺伝子発現変動2018
- Author(s)
  石川靖久, 朴聖俊, 中井謙太
- Organizer
  生命医薬情報学連合大会 (IIBMP2018)
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] ゴノサイトでの新規DNAメチル化に付随して起こる多段階のクロマチンの緩み2018
- Author(s)
  山中総一郎, 西原秀典, 藤英博, 永井映司, 橋本浩介, 朴聖俊, 渋谷あおい, Ana Maria Suzuki, 田中悠二郎, 中井謙太, Piero Carninci, 佐々木裕之, 塩見春彦
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] Analyzing the 3D Chromatin Organization Coordinating with Gene Expression Regulation in B-cell Lymphoma2018
- Author(s)
  Luis A.E. Nagai, Sung-Joon Park and Kenta Nakai
- Organizer
  The 17th International Conference On BioInformatics
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] Three-Dimensional Chromatin Structures Coordinate with Gene Expression Levels and Reveals Inter-chromosomal Interactions in B-Cell Lymphoma2018
- Author(s)
  Luis A.E. Nagai, Sung-Joon Park and Kenta Nakai
- Organizer
  生命医薬情報学連合大会 (IIBMP2018)
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] Profiling of Cell Microbial Contamination by NGS data2018
- Author(s)
  Sung-Joon Park
- Organizer
  配列解析シンポジウム、日本バイオインフォマティクス学会
- Invited
- Data Source
  KAKENHI-PROJECT-17K00396
[Presentation] 脂肪由来幹細胞（Adipose-derived stem cell）の分化に関与するエピジェネティック因子の探索2018
- Author(s)
  山谷恭代, 朴聖俊, 中井謙太
- Organizer
  生命医薬情報学連合大会 (IIBMP2018)
- Data Source
  KAKENHI-PUBLICLY-18H04710
[Presentation] Applying Joint Non-Negative Matrix Factorization to Functional Analysis of Microbial Infection2018
- Author(s)
  Sung-Joon Park and Kenta Nakai
- Organizer
  The 17th International Conference On BioInformatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00396
[Presentation] Development of a Pipeline for Contamination Profiling of Cells with Next Generation Sequencing Data2017
- Author(s)
  Sung-Joon Park
- Organizer
  The 28th International Conference on Genome Informatics Workshop (GIW)/BIOINFO 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00396

1. 白髭克彦 (90273854)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. 泉幸佑 (40383707)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 岩田隆紀 (60431946)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 丸川恵理子 (40419263)

# of Collaborated Projects: 1 results

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5. 水谷幸嗣 (60451910)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
6. KATAGIRI Sayaka

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
7. OHKAWA Yasuyuki

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8. 青木章

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9. 小林宏明

# of Collaborated Projects: 0 results

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10. 竹内康雄

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11. 齋藤裕

# of Collaborated Projects: 0 results

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12. 山中総一郎

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
13. 中井謙太

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
14. 鬼塚理

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Park Sung-Joon 朴 聖俊

Research Projects

Research Products

Co-Researchers

Analysis of the mechanism of wound healing and anti-inflammatory action by mesenchymal stem cell exosomes

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Developing computational methods for quantitative analysis of 3D transcriptional domainPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Genomic modalities of development and differentiation and elucidation of disease mechanisms by their malfunction

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

染色体構造データベースを利用した転写制御のモデリングPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Institution

Developing a computational method for microbial contaminant detection and functional inference using next-generation sequencing dataPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] A computational approach for deciphering the interactions between proximal and distal gene regulators in GC B-cell response2024

Author(s)

Journal Title

Data Source

[Journal Article] Genome-wide ATAC-see screening identifies TFDP1 as a modulator of global chromatin accessibility2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Anti-inflammatory effects of cold atmospheric plasma irradiation on the THP-1 human acute monocytic leukemia cell line2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A semi-supervised deep learning approach for predicting the functional effects of genomic non-coding variations2021

Author(s)

Journal Title

Data Source

[Journal Article] Characterizing promoter and enhancer sequences by a deep learning method2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Existence and possible roles of independent non-CpG methylation in the mammalian brain2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Existence and possible roles of independent non-CpG methylation in mammalian brain2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] HHEX promotes myeloid transformation in cooperation with mutant ASXL12020

Author(s)

Journal Title

Data Source

[Journal Article] Genome-Wide Scanning of Gene Expression2019

Author(s)

Journal Title

DOI

ISBN

Data Source

[Journal Article] Broad Heterochromatic Domains Open in Gonocyte Development Prior to De Novo DNA Methylation2019

Author(s)

Journal Title

DOI

Park Sung-Joon 朴聖俊