GHOSH SAPTARSHI ゴシュサプタルシ

Researcher Number	40840781
Affiliation (based on the past Project Information) *help	2023: 甲南大学, 先端生命工学研究所, 特任研究助教 2018 – 2022: 甲南大学, 先端生命工学研究所, 博士研究員
Review Section/Research Field	Except Principal Investigator Medium-sized Section 37:Biomolecular chemistry and related fields
Keywords	Except Principal Investigator 構造解析 / 遺伝子発現 / 熱力学的解析 / 非二重らせん構造 / 核酸 / 非標準構造 / 植物 / NMR / 結晶構造解析 / 熱力学 / 非標準核酸構造

Analysis and regulation of non-canonical nucleic acids under intracellular conditions
- Principal Investigator
  
  Sugimoto Naoki
- Project Period (FY)
  2018 – 2023
- Research Category
  
  Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))
- Review Section
  
  Medium-sized Section 37:Biomolecular chemistry and related fields
- Research Institution
  Konan University

All 2023 2022 2020 2019

All Journal Article Presentation

[Journal Article] Nearest-neighbor parameters for the prediction of RNA duplex stability in diverse in vitro and cellular-like crowding conditions2022
- Author(s)
  S. Ghosh, S. Takahashi, D. Banerjee, T. Ohyama, T. Endoh, H. Tateishi-Karimata, and N. Sugimoto
- Journal Title
  
  Nucleic Acids Res.,
  
  Volume: 51 Issue: 9 Pages: 4101-4111
- DOI
  10.1093/nar/gkad020
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H02864, KAKENHI-PROJECT-18KK0164, KAKENHI-ORGANIZER-21H05107, KAKENHI-PLANNED-21H05108, KAKENHI-PLANNED-21H05109, KAKENHI-PROJECT-22H04975
[Journal Article] Dielectricity of a molecularly crowded solution accelerates NTP misincorporation during RNA-dependent RNA polymerization by T7 RNA polymerase2022
- Author(s)
  S. Takahashi, S. Matsumoto, P. Chilka, S. Ghosh, H. Okura, and N. Sugimoto
- Journal Title
  
  Sci. Rep.
  
  Volume: 12 Issue: 1 Pages: 1149-1149
- DOI
  10.1038/s41598-022-05136-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21258, KAKENHI-PLANNED-17H06351, KAKENHI-PROJECT-19H00928, KAKENHI-PROJECT-19F19337, KAKENHI-PROJECT-21K05283, KAKENHI-PROJECT-18KK0164, KAKENHI-PROJECT-21K14742
[Journal Article] Preferential targeting cancer-related i-motif DNAs by the plant flavonol fisetin for theranostics applications2020
- Author(s)
  Takahashi Shuntaro、Bhattacharjee Snehasish、Ghosh Saptarshi、Sugimoto Naoki、Bhowmik Sudipta
- Journal Title
  
  Scientific Reports
  
  Volume: 10 Issue: 1 Pages: 2504-2504
- DOI
  10.1038/s41598-020-59343-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K01968, KAKENHI-PROJECT-18KK0164, KAKENHI-PLANNED-17H06351, KAKENHI-PROJECT-19H00928, KAKENHI-PROJECT-19F19337, KAKENHI-PROJECT-18K19152
[Journal Article] Improved nearest-neighbor parameters for the stability of RNA/DNA hybrids under a physiological condition2020
- Author(s)
  D. Banerjee, H. Tateishi-Karimata, T. Ohyama, S. Ghosh, T. Endoh, S. Takahashi, and N. Sugimoto
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 48 Issue: 21 Pages: 12042-12054
- DOI
  10.1093/nar/gkaa572
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K05723, KAKENHI-PROJECT-20K21258, KAKENHI-PROJECT-18KK0164, KAKENHI-PLANNED-17H06351, KAKENHI-PROJECT-19H00928, KAKENHI-PROJECT-20H02864, KAKENHI-PROJECT-19F19337, KAKENHI-PROJECT-17K01968
[Journal Article] Nearest-neighbor parameters for predicting DNA duplex stability in diverse molecular crowding conditions2020
- Author(s)
  S. Ghosh, S. Takahashi, T. Ohyama, T. Endoh, H. Tateishi-Karimata, and N. Sugimoto
- Journal Title
  
  Proc. Natl. Acad. Sci. USA.
  
  Volume: 117 Issue: 25 Pages: 14194-14201
- DOI
  10.1073/pnas.1920886117
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K05723, KAKENHI-PROJECT-20K21258, KAKENHI-PROJECT-18KK0164, KAKENHI-PLANNED-17H06351, KAKENHI-PROJECT-19H00928, KAKENHI-PROJECT-20H02864, KAKENHI-PROJECT-19F19337, KAKENHI-PROJECT-17K01968
[Journal Article] Molecular crowding induces primer extension by RNA polymerase through base stacking beyond Watson-Crick rules2020
- Author(s)
  S. Takahashi, H. Okura, P. Chilika, S. Ghosh, and N. Sugimoto
- Journal Title
  
  RSC Adv.
  
  Volume: 10 Issue: 55 Pages: 33052-33058
- DOI
  10.1039/d0ra06502a
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21258, KAKENHI-PROJECT-18KK0164, KAKENHI-PLANNED-17H06351, KAKENHI-PROJECT-19H00928, KAKENHI-PROJECT-19F19337, KAKENHI-PROJECT-17K01968
[Journal Article] Validation of the nearest-neighbor model for Watson?Crick self-complementary DNA duplexes in molecular crowding condition2019
- Author(s)
  Ghosh Saptarshi、Takahashi Shuntaro、Endoh Tamaki、Tateishi-Karimata Hisae、Hazra Soumitra、Sugimoto Naoki
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 47 Issue: 7 Pages: 0-0
- DOI
  10.1093/nar/gkz071
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06351, KAKENHI-PROJECT-19K05723, KAKENHI-PROJECT-18KK0164, KAKENHI-PROJECT-19H00928, KAKENHI-PROJECT-17K05941, KAKENHI-PROJECT-18K19152
[Presentation] Twisting of i-motif DNA induced by diverse molecular crowdings2023
- Author(s)
  S. Takahashi, S. Ghosh, M. Trajkovski, P. Chilka, T. Ohyama, J. Plavec, N. Sugimoto
- Organizer
  第50回国際核酸化学シンポジウム (ISNAC2023)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0164
[Presentation] Physical Chemistry of Nucleic Acids: “To B or not to B”2023
- Author(s)
  S. Takahashi, S. Ghosh, H. Tateishi-Karimata, D. Banerjee, T. Endoh, T. Ohyama, N. Sugimoto
- Organizer
  Advances in Noncanonical Nucleic Acids “ANNA2023”
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0164
[Presentation] Development of the prediction method for stability of RNA/DNA hybrids under a physiological condition2020
- Author(s)
  BANERJEE Dipanwita, 建石寿枝, 大山達也, GHOSH Saptarshi, 遠藤玉樹, 高橋俊太郎, 杉本直己
- Organizer
  第14回バイオ関連化学シンポジウム
- Data Source
  KAKENHI-PROJECT-18KK0164
[Presentation] Stability prediction of DNA duplexes available under diverse molecular crowding conditions2020
- Author(s)
  GHOSH Saptarshi, 高橋俊太郎, 大山達也, 遠藤玉樹, 建石寿枝, 杉本直己
- Organizer
  第14回バイオ関連化学シンポジウム
- Data Source
  KAKENHI-PROJECT-18KK0164
[Presentation] Prediction method for DNA duplex stability in molecular crowding conditions2019
- Author(s)
  S. Ghosh, S. Takahashi, T. Ohyama, T. Endoh, H. Kateishi-Karimata, N. Sugimoto
- Organizer
  第46回国際核酸化学シンポジウム
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0164

1. Sugimoto Naoki (60206430)

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results
2. TENG Ye (00830621)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 建石寿枝 (20593495)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
4. 高橋俊太郎 (40456257)

# of Collaborated Projects: 1 results

# of Collaborated Products: 6 results
5. 遠藤玉樹 (90550236)

# of Collaborated Projects: 1 results

# of Collaborated Products: 6 results
6. 松本咲 (50850822)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

GHOSH SAPTARSHI ゴシュ サプタルシ

Research Projects

Research Products

Co-Researchers

Analysis and regulation of non-canonical nucleic acids under intracellular conditions

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Nearest-neighbor parameters for the prediction of RNA duplex stability in diverse in vitro and cellular-like crowding conditions2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Dielectricity of a molecularly crowded solution accelerates NTP misincorporation during RNA-dependent RNA polymerization by T7 RNA polymerase2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Preferential targeting cancer-related i-motif DNAs by the plant flavonol fisetin for theranostics applications2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Improved nearest-neighbor parameters for the stability of RNA/DNA hybrids under a physiological condition2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Nearest-neighbor parameters for predicting DNA duplex stability in diverse molecular crowding conditions2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Molecular crowding induces primer extension by RNA polymerase through base stacking beyond Watson-Crick rules2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Validation of the nearest-neighbor model for Watson?Crick self-complementary DNA duplexes in molecular crowding condition2019

Author(s)

Journal Title

DOI

Data Source

[Presentation] Twisting of i-motif DNA induced by diverse molecular crowdings2023

Author(s)

Organizer

Data Source

[Presentation] Physical Chemistry of Nucleic Acids: “To B or not to B”2023

Author(s)

Organizer

Data Source

[Presentation] Development of the prediction method for stability of RNA/DNA hybrids under a physiological condition2020

Author(s)

Organizer

Data Source

[Presentation] Stability prediction of DNA duplexes available under diverse molecular crowding conditions2020

Author(s)

Organizer

Data Source

[Presentation] Prediction method for DNA duplex stability in molecular crowding conditions2019

Author(s)

Organizer

Data Source

GHOSH SAPTARSHI ゴシュサプタルシ