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KATOU Yuki  加藤 由紀

ORCIDConnect your ORCID iD *help
Researcher Number 50391917
Affiliation (based on the past Project Information) *help 2011 – 2016: 東京大学, 分子細胞生物学研究所, 助教
2011: 東京大学, 分子生物学研究所, 助教
2010: Tokyo Institute of Technology, 生命理工学研究科, その他
2009: Tokyo Institute of Technology, 大学院・生命理工学研究科, 特任助教
Review Section/Research Field
Principal Investigator
基礎ゲノム科学
Except Principal Investigator
Biological Sciences / Laboratory animal science
Keywords
Principal Investigator
染色体 / ゲノム機能 / 細胞周期 / コヒーシン / アセチル化 / ChIP-seq解析 / ChIP-chip解析
Except Principal Investigator
DNA / ゲノム / 非コード領域 … More / 組換え / 転写 / クロマチン / エピゲノム / 遺伝 / 非コードDNA / 偽遺伝子 / ncDNA / 遺伝情報 / 減数分裂 / アフリカツメガエル / 器官再生 / 未分化増殖細胞 / インターロイキン-11 / ゲノム編集 / PhyH-like / Phyhd1 / T細胞活性化 / 再生芽 / 増殖細胞 / Interleukin 11 / 脊索 / pentraxin / 再生 / 免疫細胞 / 非自己 / Interleukin / T細胞 / 自己免疫応答 / interleukin-11 / keratin-18 Less
  • Research Projects

    (3 results)
  • Research Products

    (32 results)
  • Co-Researchers

    (21 People)
  •  Study on the reactivation of regenerative ability by masking 'autoantigens' expressed in organ blastema.

    • Principal Investigator
      Kubo Takeo
    • Project Period (FY)
      2014 – 2016
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Laboratory animal science
    • Research Institution
      The University of Tokyo
  •  DNA reorganization mechanisms in non-coding genome

    • Principal Investigator
      OHTA Kunihiro
    • Project Period (FY)
      2011 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      The University of Tokyo
  •  Analysis of the acetylation of SMC3Principal Investigator

    • Principal Investigator
      KATOU Yuki
    • Project Period (FY)
      2009 – 2012
    • Research Category
      Grant-in-Aid for Young Scientists (A)
    • Research Field
      基礎ゲノム科学
    • Research Institution
      The University of Tokyo
      Tokyo Institute of Technology

All 2015 2014 2012 2011 2010 2009 Other

All Journal Article Presentation

  • [Journal Article] Germline gain-of-function mutations in AFF4 cause a developmental syndrome functionally linking the super elongation complex and cohesin.2015

    • Author(s)
      Izumi K, Nakato R, Zhang Z, Edmondson AC, Noon S, Dulik MC, Rajagopalan R, Venditti CP, Gripp K, Samanich J, Zackai EH, Deardorff MA, Clark D, Allen JL, Dorsett D, Misulovin Z, Komata M, Bando M, Kaur M, Katou Y, Shirahige K*, Krantz ID*.
    • Journal Title

      Nat Genet.

      Volume: 47 Pages: 338-338

    • DOI

      10.1038/ng.3229

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-25290065, KAKENHI-PLANNED-23114003, KAKENHI-PUBLICLY-15H01347
  • [Journal Article] Unique Gene Expression Profile of the Proliferating Xenopus Tadpole Tail Blastema Cells Deciphered by RNA-Sequencing Analysis.2015

    • Author(s)
      Hiroshi Tsujioka, Takekazu kunieda, Yuki Katou, Katsuhiko Shirahige, Takeo Kubo
    • Journal Title

      PLoS One.

      Volume: 10(3)

    • DOI

      10.1371/journal.pone.0111655

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-26640051, KAKENHI-PLANNED-23114003
  • [Journal Article] The chromosomal association of the Smc5/6 complex depends on cohesion and predicts the level of sister chromatid entanglement.2015

    • Author(s)
      Jeppsson K, Carlborg KK, Nakato R, Berta DG, Lilienthal I, Kanno T, Lindqvist A, Brink MC, Dantuma NP, Katou Y, Shirahige K, Sjögren C.
    • Journal Title

      PLoS Genet.

      Volume: 10

    • DOI

      10.1371/journal.pgen.1004680

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-23114003
  • [Journal Article] Exome Sequencing Identification of EP300 Mutation in a Proband with Coloboma and Imperforate Anus: Possible Expansion of the Phenotypic Spectrum of Rubinstein-Taybi Syndrome.2015

    • Author(s)
      Koji Masuda, Kazuhiro Akiyama, Michiko Arakawa, Eriko Nishi, Noritaka Kitazawa, Tsukasa Higuchi, Yuki Katou, Katsuhiko Shirahige, Kosuke Izumi
    • Journal Title

      Mol Syndromol.

      Volume: 6 Pages: 99-103

    • DOI

      10.1159/000375542

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-15J10948, KAKENHI-PLANNED-23114003
  • [Journal Article] Induction of primordial germ cell-like cells from mouse embryonic stem cells by ERK signal inhibition.2015

    • Author(s)
      Kurimoto, K., Yabuta, Y., Hayashi, K., Ohta, H., Kiyonari, H., Mitani, T., Moritoki, Y., Kohri, K., Kimura, H., Yamamoto, T., Katou, Y., Shirahige, K., Saitou, M.
    • Journal Title

      Stem Cells

      Volume: 16 Pages: 2668-2678

    • DOI

      10.1016/j.stem.2015.03.002

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-24681039, KAKENHI-PROJECT-25650065, KAKENHI-PLANNED-23114003, KAKENHI-PLANNED-25114006, KAKENHI-PROJECT-25290033
  • [Journal Article] Replication-Coupled PCNA Unloading by the Elg1 Complex Occurs Genome-wide and Requires Okazaki Fragment Ligation.2015

    • Author(s)
      Takashi Kubota, Yuki Katou, Ryuichiro Nakato, Katsuhiko Shirahige, Anne D. Donaldson
    • Journal Title

      Cell Rep.

      Volume: 12 Pages: 774-787

    • DOI

      10.1016/j.celrep.2015.06.066

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K18465, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PLANNED-23114003
  • [Journal Article] BRCA2 coordinates the activities of cell-cycle kinases to promote genome stability.2014

    • Author(s)
      Yata K, Bleuyard JY, Nakato R, Ralf C, Katou Y, Schwab RA, Niedzwiedz W, Shirahige K, Esashi F.
    • Journal Title

      Cell Rep.

      Volume: 7 Pages: 1547-1559

    • DOI

      10.1016/j.celrep.2014.04.023

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-23114003
  • [Journal Article] 5hmC plays a critical role in glioblastomagenesis by recruiting the CHTOP-methylosome complex2014

    • Author(s)
      Hiroki Takai, Tetsu Akiyama et al.
    • Journal Title

      Cell Rep

      Volume: 9 Pages: 48-60

    • DOI

      10.1016/j.celrep.2014.08.071

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-14J10908, KAKENHI-ORGANIZER-22112001, KAKENHI-PLANNED-22112004, KAKENHI-PROJECT-24390340, KAKENHI-PROJECT-24501313, KAKENHI-PUBLICLY-25134702, KAKENHI-PROJECT-25620125, KAKENHI-PROJECT-26220205, KAKENHI-PROJECT-26253073, KAKENHI-PROJECT-26293321, KAKENHI-PROJECT-26560442, KAKENHI-PROJECT-26702035, KAKENHI-PLANNED-23114003, KAKENHI-PLANNED-26113003
  • [Journal Article] Dimeric combinations of MafB, cFos and cJun control the apoptosis-survival balance in limb morphogenesis.2014

    • Author(s)
      N. suda, T. Itoh, R. Nakato et. al.
    • Journal Title

      Development.

      Volume: 141 Pages: 2885-2894

    • DOI

      10.1242/dev.099150

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PLANNED-22125008, KAKENHI-PUBLICLY-25111720, KAKENHI-PROJECT-25291086, KAKENHI-PROJECT-25461353, KAKENHI-PLANNED-23114003
  • [Journal Article] EndogenousDNA replication stress results inexpansion of dNTP pools and a mutator phenotype2012

    • Author(s)
      Davidson MB, KatouY , Keszthelyi A,Sing TL, Xia T, Ou J, Vaisica JA,Thevakumaran N, Marjavaara L, Myers CL,Chabes A, Shirahige K, Brown GW
    • Journal Title

      EMBO J

      Volume: 31(4) Pages: 895-907

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Journal Article] Shirahige K, Labib K.Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases2012

    • Author(s)
      De Piccoli G, Katou Y , Itoh T, Nakato
    • Journal Title

      Mol Cell

      Volume: 45(5) Pages: 696-704

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Journal Article] Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype2012

    • Author(s)
      Davidson MB, Katou Y, Keszthelyi A, Sing TL, Xia T, Ou J, Vaisica JA, Thevakumaran N, Marjavaara L, Myers CL, Chabes A, Shirahige K, Brown GW
    • Journal Title

      EMBO J

      Volume: 31(4) Pages: 895-907

    • DOI

      10.1038/emboj.2011.485

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025, KAKENHI-ORGANIZER-23114001, KAKENHI-PLANNED-23114003
  • [Journal Article] Chromosome length influences replication-induced topological stress2011

    • Author(s)
      Kegel A, Betts-Lindroos H, Kanno T, Jeppsson K, Strom L, Katou Y, Itoh T, Shirahige K, Sjogren C
    • Journal Title

      Nature

      Volume: 471(7338 Pages: 392-396

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Journal Article] Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing2011

    • Author(s)
      Tanaka S, Nakato R, Katou Y, Shirahige K, Araki H
    • Journal Title

      Curr Biol

      Volume: 21(24) Pages: 2055-2063

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Journal Article] The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores2011

    • Author(s)
      Bermejo R, Capra T, Jossen R, Colosio A, Frattini C, Carotenuto W, Cocito A, Doksani Y, Klein H, Gomez-Gonzalez B, Aguilera A, Katou Y, Shirahige K, Foiani M
    • Journal Title

      Cell

      Volume: 146(2) Pages: 233-246

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Journal Article] Shirahige K, Araki H.Origin association of Sld3,Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing.2011

    • Author(s)
      Tanaka S, Nakato R, Katou Y
    • Journal Title

      Curr Biol

      Volume: 21(24) Pages: 2055-63

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Journal Article] Both interaction surfaces within cohesin's hinge domain are essential for its stable chromosomal association2010

    • Author(s)
      Mishra A, Hu B, Kurze A, Beckouet F, Farcas AM, Dixon SE, Katou Y, Khalid S, Shirahige K, Nasmyth K
    • Journal Title

      Curr Biol 20

      Pages: 279-289

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Journal Article] Tof1,and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks2009

    • Author(s)
      Bando M*, Katou Y *, Komata M, Tanaka H,Itoh T, Sutani T, Shirahige K. Csm3
    • Journal Title

      J Biol Chem

      Volume: 284(49) Pages: 34355-65

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Journal Article] Ctf4 coordinates the progression of helicase and DNA polymerase alpha. Genes2009

    • Author(s)
      Tanaka H*, Katou Y * , Yagura M, Saitoh K, Itoh T, Araki H, Bando M, Shirahige K.
    • Journal Title

      Cells

      Volume: 14(7) Pages: 807-20

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Journal Article] Involvement of a chromatin remodeling complex in damage tolerance during DNA replication2009

    • Author(s)
      Falbo KB, Alabert C, Katou Y, Wu S, Han J, Wehr T, Xiao J, He X, Zhang Z, Shi Y, Shirahige K, Pasero P, Shen X.
    • Journal Title

      Nat Struct Mol Biol. 16

      Pages: 1167-1172

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Journal Article] Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks2009

    • Author(s)
      Bando M, Katou Y, Komata M, Tanaka H, Itoh T, Sutani T, Shirahige K.
    • Journal Title

      J Biol Chem. 284

      Pages: 34355-34365

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Presentation] The role of interleukin 11-signaling in tail regeneration of Xenopus laevis tadpoles.2015

    • Author(s)
      Tsujioka H, Kunieda T, Katou Y, Shirahige K, Kubo T
    • Organizer
      Society for Developmental Biology 74th annual meeting
    • Place of Presentation
      Snowbird, Utah USA
    • Year and Date
      2015-07-09
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26640051
  • [Presentation] Analysis of the role of interleukin 11 in tail regeneration of Xenopus laevis tadpoles2015

    • Author(s)
      辻岡洋、國枝武和、加藤由紀、白髭克彦、久保健雄
    • Organizer
      第48回日本発生生物学会大会
    • Place of Presentation
      つくば国際会議場 (茨城県つくば市)
    • Year and Date
      2015-06-02
    • Data Source
      KAKENHI-PROJECT-26640051
  • [Presentation] Mec1 is required for efficient progression of replication forks at cohesin localization sites2012

    • Author(s)
      Yuki KATOU
    • Organizer
      The 13th International Conference on Systems Biology
    • Place of Presentation
      Toront,Canada
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Presentation] Genome-wide Dynamic change of Cohesin and replication in yeast.2012

    • Author(s)
      Yuki Katou, Ryuichiro Nakato,Katsuhiko Shirahige
    • Organizer
      The 13th International Conference on Systems Biology
    • Place of Presentation
      in Toronto
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Presentation] 発表タイトル:次世代シーケンサーを使用した姉妹染色分体間の接着形成に必要な因子の解析2010

    • Author(s)
      加藤由起、伊藤武彦、白髭克彦
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      in Kobe Japan
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Presentation] Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks2009

    • Author(s)
      加藤由起、坂東優篤、白髭克彦
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-11
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Presentation] Csm3,Tof1,and Mrc1 form a Heterotrimeric Mediator Complex that Associates with DNA Replication Forks2009

    • Author(s)
      加藤由起、田中宏和,白髭克彦
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      in
    • Data Source
      KAKENHI-PROJECT-21681025
  • [Presentation] アフリカツメガエル幼生尾の再生芽増殖細胞に選択的に発現する遺伝子の網羅的検索と解析

    • Author(s)
      辻岡洋、國枝武和、加藤由起、白髭克彦、久保健雄
    • Organizer
      日本動物学会 第85回 仙台大会
    • Place of Presentation
      宮城県仙台市 東北大学川内北キャンパス
    • Year and Date
      2014-09-11 – 2014-09-13
    • Data Source
      KAKENHI-PROJECT-26640051
  • [Presentation] アフリカツメガエル幼生尾の再生芽増殖細胞に選択的に発現する遺伝子の網羅的検索と解析

    • Author(s)
      辻岡洋、國枝武和、加藤由起、白髭克彦、久保健雄
    • Organizer
      第66回 日本細胞生物学会大会
    • Place of Presentation
      奈良県奈良市 新公会堂 東大寺総合文化センター
    • Year and Date
      2014-06-11 – 2014-06-13
    • Data Source
      KAKENHI-PROJECT-26640051
  • [Presentation] Comprehensive screening and identification of genes expressed preferentially in the proliferating blastema cells of the Xenopus laevis tadpole tails

    • Author(s)
      Hiroshi Tsujioka, Takekazu Kunieda, Yuki Katou, Katsuhiko Shirahige, Takeo Kubo
    • Organizer
      47th Annual Meeting of the Japanese Society of Developmental Biologists
    • Place of Presentation
      愛知県名古屋市 WINC AICHI
    • Year and Date
      2014-05-27 – 2014-05-30
    • Data Source
      KAKENHI-PROJECT-26640051
  • [Presentation] アフリカツメガエル幼生尾の再生芽増殖細胞に選択的に発現する遺伝子の解析

    • Author(s)
      辻岡洋、國枝武和、加藤由起、白髭克彦、久保健雄
    • Organizer
      第37回 日本分子生物学会年会
    • Place of Presentation
      神奈川県横浜市 パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Data Source
      KAKENHI-PROJECT-26640051
  • 1.  OHTA Kunihiro (90211789)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 2.  YAMADA Takatomi (30451850)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 3.  Kubo Takeo (10201469)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 7 results
  • 4.  SHIRAHIGE Katsuhiko (90273854)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 9 results
  • 5.  ITOH Takehiko
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 3 results
  • 6.  NAKATO Ryuichiro
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 7.  NASU Ryo
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 8.  MUKASA Akitake
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 9.  SAITO Kuniaki
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 10.  SUZUKI Takeo
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 11.  坂東 優篤
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 12.  佐藤 靖史
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 13.  秋山 徹
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 14.  藤堂 具紀
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 15.  稲生 靖
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 16.  鈴木 勉
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 17.  栗本 一基
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 18.  林 克彦
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 19.  片岡 浩介
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 20.  黒川 大輔
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 21.  田中 幹子
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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