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AGARI Yoshihiro  上利 佳弘

ORCIDConnect your ORCID iD *help
Researcher Number 50469889
Affiliation (based on the past Project Information) *help 2015: 国立研究開発法人理化学研究所, 放射光科学総合研究センター, 特別研究員
2012: 独立行政法人理化学研究所, 機能解析第1研究チーム, 特別研究員
Review Section/Research Field
Except Principal Investigator
Molecular biology / Genome biology
Keywords
Except Principal Investigator
Thermus thermophilus / CRISPR-Casシステム / 国際情報交換(オランダ、アメリカ) / リボヌクレアーゼ / 低分子RNA / タンパク質 / 電子顕微鏡構造 / 超分子複合体 / 獲得免疫 / CRISPR-Cas … More / mRNA / 機能未知遺伝子 / 転写制御 / 機能ゲノム科学 / 転写因子 / TetRファミリー / 蛋白質 / 高度好熱菌 / 機能発見 / X線結晶構造 / 遺伝子発現調節 Less
  • Research Projects

    (2 results)
  • Research Products

    (25 results)
  • Co-Researchers

    (3 People)
  •  Systematic understanding of novel anti-virus system in a cell

    • Principal Investigator
      Shinkai Akeo
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Molecular biology
    • Research Institution
      Institute of Physical and Chemical Research
  •  Classification of functionally unknown genes based on their transcriptional regulation

    • Principal Investigator
      SHINKAI Akeo
    • Project Period (FY)
      2010 – 2012
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Genome biology
    • Research Institution
      The Institute of Physical and Chemical Research

All 2014 2013 2012 2011 2010 Other

All Journal Article Presentation

  • [Journal Article] LdrP, a cAMP receptor protein/FNR family transcriptional regulator, serves as a positive regulator for the light-inducible gene cluster in the megaplasmid of Thermus thermophilus2014

    • Author(s)
      Hideaki Takano, Yoshihiro Agari, Kenta Hagiwara, Ren Watanabe, Ryuta Yamazaki, Teruhiko Beppu, Akeo Shinkai, Kenji Ueda
    • Journal Title

      Microbiology

      Volume: 160 Issue: 12 Pages: 2650-2660

    • DOI

      10.1099/mic.0.082263-0

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22510208, KAKENHI-PROJECT-25450113
  • [Journal Article] Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus2013

    • Author(s)
      Staals, R. H. J., Agari, Y., Maki-Yonekura, S., Zhu, Y., Taylor, D. W., van Duijn, E., Barendregt, A., Vlot, M., Koehorst, J. J., Sakamoto, K., Masuda, A., Dohmae, N., Schaap, P. J., Doudna, J. A., Heck, A. J. R., Yonekura, K., van der Oost, J. and Shinkai, A.
    • Journal Title

      Molecular Cell

      Volume: 52 Issue: 1 Pages: 135-145

    • DOI

      10.1016/j.molcel.2013.09.013

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24657111, KAKENHI-PROJECT-25440013
  • [Journal Article] Structure and function of a TetR family transcriptional regulator, SbtR, from Thermus thermophilus HB82013

    • Author(s)
      Agari Y, Sakamoto K, Yutani K, Kuramitsu S, Shinkai A.
    • Journal Title

      Proteins

      Volume: (in press) Issue: 7 Pages: 1166-1178

    • DOI

      10.1002/prot.24266

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22510208, KAKENHI-PROJECT-22570166
  • [Journal Article] Transcriptional repression mediated by a TetR family protein, PfmR, from Thermus thermophilus HB82012

    • Author(s)
      Agari Y, Sakamoto K, Kuramitsu S, Shinkai A.
    • Journal Title

      J. Bacteriol

      Volume: 194(17) Issue: 17 Pages: 4630-4641

    • DOI

      10.1128/jb.00668-12

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Journal Article] Phenylacetyl-coenzyme A is an effector molecule of TetR family transcriptional repressor PaaR from Thermus thermophilus HB82011

    • Author(s)
      Sakamoto K, Agari Y, Kuramitsu S, Shinkai A
    • Journal Title

      J. Bacteriol

      Volume: 193(17) Issue: 17 Pages: 4388-4395

    • DOI

      10.1128/jb.05203-11

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Journal Article] TetR family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation2011

    • Author(s)
      Agari Y, Agari K, Sakamoto K, Kuramitsu S, Shinkai A
    • Journal Title

      Microbiology

      Volume: 157(Pt 6) Issue: 6 Pages: 1589-1601

    • DOI

      10.1099/mic.0.048017-0

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Journal Article] TetR family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation

    • Author(s)
      Yoshihiro Agari
    • Journal Title

      Microbiology

      Volume: (in press)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Structural and functional analysis of TetR family transcriptional regulator PfmR from Thermus thermophilus HB82012

    • Author(s)
      上利佳弘、坂本恵子、新海暁男
    • Organizer
      第2回モデル生物丸ごと一匹学会
    • Place of Presentation
      Spring-8、兵庫
    • Year and Date
      2012-09-29
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] 分子間ジスルフィド結合を持つThermus thermophilus HB8由来TetRファミリー転写因子TTHA0167の構造と機能2012

    • Author(s)
      坂本恵子、上利佳弘、倉光成紀、新海暁男
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡、福岡
    • Year and Date
      2012-12-13
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Thermus thermophilus HB8由来TetRファミリー転写調節因子 PfmRによる転写抑制2012

    • Author(s)
      上利佳弘、坂本恵子、倉光成紀、新海暁男
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡、福岡
    • Year and Date
      2012-12-13
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Structural and functional analysis of TetR family transcriptional regulator TTHA0167 from T. thermophilus HB82012

    • Author(s)
      坂本恵子、上利佳弘、新海暁男
    • Organizer
      第2回モデル生物丸ごと一匹学会
    • Place of Presentation
      SPring-8、兵庫
    • Year and Date
      2012-09-29
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Functional and structural characterization of the TetR family transcriptional repressor PaaR from Thermus thermophilus HB82011

    • Author(s)
      Keiko Sakamoto, Yoshihiro Agari, Seiki Kuramitsu, Akeo Shinkai
    • Organizer
      第1回モデル生物丸ごと一匹学会(高度好熱菌丸ごと一匹プロジェクト第10回連携研究会共催)
    • Place of Presentation
      スプリング-8(兵庫県)
    • Year and Date
      2011-08-20
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Thermus thermophilus PaaR, a TetR family transcriptional repressor, is involved in phenylacetic acid degradation2011

    • Author(s)
      Keiko Sakamoto, Yoshihiro Agari, Seiki Kuramitsu, Akeo Shinkai
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2011-12-15
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Study of transcriptional regulatory system of T.thermophilus HB8 : Structure and function of two TetR family proteins2011

    • Author(s)
      Akeo Shinkai, Yoshihiro Agari, Keiko Sakamoto
    • Organizer
      第1回モデル生物丸ごと一匹学会(高度好熱菌丸ごと一匹プロジェクト第10回連携研究会共催)
    • Place of Presentation
      スプリング-8(兵庫県)(招待講演)
    • Year and Date
      2011-08-20
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Structural and functional genomics of a model organism Thermus thermophilus HB8: toward functional discovery of functionally unknown proteins2011

    • Author(s)
      Shinkai A, Bessho Y, Agari Y, Iino H, Fukui K, Kitamura A, Sakamoto K, Kim K, Masui R, Yokoyama S, Kuramitsu S
    • Organizer
      International Conference on Structural Genomics
    • Place of Presentation
      Chestnut Conference Centre、トロント、カナダ
    • Year and Date
      2011-05-13
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] 高度好熱菌Thermus thermophilus HB8株をモデル生物とし、転写制御の観点から機能未知遺伝子を分類する:転写因子の機能発見研究と機能未知遺伝子の分類2011

    • Author(s)
      新海暁男、上利佳弘、坂本恵子
    • Organizer
      第84回日本生化学大会
    • Place of Presentation
      京都国際会館、京都
    • Year and Date
      2011-09-23
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Functional and structural characterization of the TetR family transcriptional repressor PaaR from Thermus thermophilus HB82011

    • Author(s)
      坂本恵子、上利佳弘、倉光成紀、新海暁男
    • Organizer
      第1回モデル生物丸ごと一匹学会
    • Place of Presentation
      SPring-8、兵庫
    • Year and Date
      2011-08-20
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Study of transcriptional regulatory system of T. thermophilus HB8: Structure and function of two TetR family proteins2011

    • Author(s)
      新海暁男、上利佳弘、坂本恵子
    • Organizer
      第1回モデル生物丸ごと一匹学会
    • Place of Presentation
      SPring-8、兵庫
    • Year and Date
      2011-08-20
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] 高度好熱菌Thermus thermophilus HB8株をモデル生物とし、転写制御の観点から機能未知遺伝子を分類する:転写因子の機能発見研究と機能未知遺伝子の分類2011

    • Author(s)
      新海暁男、上利佳弘、坂本恵子
    • Organizer
      第84回日本生化学大会シンポジウム
    • Place of Presentation
      京都国際会館(京都府)(招待講演)
    • Year and Date
      2011-09-23
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Thermus thermophilus PaaR, a TetR family transcriptional repressor, is involved in phenylacetic acid degradation2011

    • Author(s)
      坂本恵子、上利佳弘、倉光成紀、新海暁男
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜、横浜
    • Year and Date
      2011-12-15
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] 脂肪酸の分解を制御する、高度好熱菌Thermus thermophilus HB8 由来TetR ファミリー転写因子FadR の構造と機能"BMB20102010

    • Author(s)
      上利佳弘、上利和子、坂本恵子、倉光成紀、新海暁男
    • Organizer
      第33回日本分子生物学会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド、神戸
    • Year and Date
      2010-12-07
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] 脂肪酸分解を制御する、高度好熱菌Thermus thermophilus HB8由来TetRファミリー転写因子FadRの構造と機能2010

    • Author(s)
      上利佳弘、上利和子、坂本恵子、倉光成紀、新海暁男
    • Organizer
      BMB2010
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] The Cmr complex of Thermus thermophilus

    • Author(s)
      Raymond H.J. Staals, Yoshihiro Agari, John van der Oost, Akeo Shinkai
    • Organizer
      CRISPR: evolution, mechanisms and infection
    • Place of Presentation
      University of St Andrews, United Kingdom
    • Data Source
      KAKENHI-PROJECT-25440013
  • [Presentation] Thermus thermophilus HB8由来TetRファミリー転写調節因子 PfmRによる転写抑制

    • Author(s)
      上利佳弘
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡、福岡
    • Data Source
      KAKENHI-PROJECT-22510208
  • [Presentation] Structural and functional analysis of TetR family transcriptional regulator PfmR from Thermus thermophilus HB8

    • Author(s)
      上利佳弘
    • Organizer
      第2回モデル生物丸ごと一匹学会
    • Place of Presentation
      SPring-8、兵庫
    • Data Source
      KAKENHI-PROJECT-22510208
  • 1.  SHINKAI Akeo (10391989)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 21 results
  • 2.  YONEKURA Koji
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 3.  MAKI-YONEKURA Saori
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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