Shibuya Tetsuo 渋谷哲朗

… Alternative Names

SHIBUYA Tetsuo 渋谷哲朗

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Researcher Number	60396893
Other IDs
Affiliation (Current)	2025: 東京大学, 医科学研究所, 教授
Affiliation (based on the past Project Information) *help	2019 – 2024: 東京大学, 医科学研究所, 教授 2010 – 2018: The University of Tokyo, 医科学研究所, 准教授 2009: The University of Tokyo, 医学部・研究所, 准教授 2008: The University of Tokyo, 医科学研究所, 准教授
Review Section/Research Field	Principal Investigator Medium-sized Section 62:Applied informatics and related fields / Theory of informatics / Basic Section 62010:Life, health and medical informatics-related / Sections That Are Subject to Joint Review: Basic Section60010:Theory of informatics-related , Basic Section60020:Mathematical informatics-related / Basic Section 60020:Mathematical informatics-related / Basic Section 60010:Theory of informatics-related / Applied informatics and related fields / Bioinformatics/Life informatics Except Principal Investigator Transformative Research Areas, Section (IV) / Broad Section J / Medium-sized Section 60:Information science, computer engineering, and related fields / Science and Engineering / Fundamental theory of informatics
Keywords	Principal Investigator ビッグデータ / アルゴリズム / 差分プライバシー / アルゴリズム理論 / 次世代シークエンサー / 検索技術 / グラフ理論 / バイオインフォマティクス / 個人ゲノム / 構造変異 … More / ゲノム解析 / ゲノムワイド相関解析 / 個人情報保護 / 情報量理論 / プライバシー / データ保護 / プライバシー保護 / ＳＭＡＤ / SMAD / ビッグクエリー / 秘匿検索 / 血縁推定 / 家族性疾患 / 秘匿技術 / 個人ゲノム検索 / 圧縮データ構造 / タンパク質立体構造検索 / 人種間網羅的ゲノム機能解析 / 機械学習 / データ検索 / タンパク質立体構造 / 検索 / 3次元立体構造 / タンパク質 / 生物情報 / データベース … More Except Principal Investigator 簡潔データ構造 / 秘匿計算 / データ構造 / アルゴリズム / アルゴリズム論 / 学習 / 列挙アルゴリズム / データ圧縮 / アルゴリズム理論 / 情報基盤 / ビッグデータ / 情報基礎 / 計算限界 / 計算理論 / MapReduce / 省スペースアルゴリズム / 並列アルゴリズム / GPGPU / メニーコア Less

情報量最適な大規模データ差分プライバシー技術の開発Principal Investigator
- Principal Investigator
  
  渋谷哲朗
- Project Period (FY)
  2023 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 60010:Theory of informatics-related
  Basic Section 60020:Mathematical informatics-related
  Sections That Are Subject to Joint Review: Basic Section60010:Theory of informatics-related , Basic Section60020:Mathematical informatics-related
- Research Institution
  The University of Tokyo
Differential Privacy for Personalized Medicine using Large Pedigree DataPrincipal Investigator
- Principal Investigator
  
  渋谷哲朗
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  The University of Tokyo
Toward the accurate large-scale structural variation detection by short read sequencersPrincipal Investigator
- Principal Investigator
  
  渋谷哲朗
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for JSPS Fellows
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  The University of Tokyo
圧縮秘匿計算による大規模データ処理
- Principal Investigator
  
  定兼邦彦
- Project Period (FY)
  2021 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 60:Information science, computer engineering, and related fields
- Research Institution
  The University of Tokyo
Big Data Processing with Compressed Secure Computation
- Principal Investigator
  
  定兼邦彦
- Project Period (FY)
  2021 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Review Section
  
  Broad Section J
- Research Institution
  The University of Tokyo
Effcient and secure search via graph annymization techniques for large individual genome databasePrincipal Investigator
- Principal Investigator
  
  Shibuya Tetsuo
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  The University of Tokyo
アルゴリズム基礎理論の追究・発展
- Principal Investigator
  
  牧野和久
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (IV)
- Research Institution
  Kyoto University
Development of kinship estimation methods on country-wide-size genome database for familial disease analysesPrincipal Investigator
- Principal Investigator
  
  Shibuya Tetsuo
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Research Field
  
  Applied informatics and related fields
- Research Institution
  The University of Tokyo
Development of SMAD for big query on big dataPrincipal Investigator
- Principal Investigator
  
  Shibuya Tetsuo
- Project Period (FY)
  2017 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Theory of informatics
- Research Institution
  The University of Tokyo
Fast Similarity Search on Big Data based on SMAD and its applicationsPrincipal Investigator
- Principal Investigator
  
  Shibuya Tetsuo
- Project Period (FY)
  2013 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Theory of informatics
- Research Institution
  The University of Tokyo
Development towards innovative data structure utilizing methodology of limit of computation
- Principal Investigator
  
  Tokuyama Takeshi
- Project Period (FY)
  2012 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Tohoku University
Development of General Computation Models for Many-core Environments
- Principal Investigator
  
  SADAKANE Kunihiko
- Project Period (FY)
  2011 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Fundamental theory of informatics
- Research Institution
  The University of Tokyo
  National Institute of Informatics
Fast and Flexible Searching Methods for Protein 3-D Structure Databases and Their ApplicationsPrincipal Investigator
- Principal Investigator
  
  SHIBUYA Tetsuo
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo

[Book] アルゴリズム2016
- Author(s)
  渋谷哲朗
- Total Pages
  157
- Publisher
  丸善出版
- Data Source
  KAKENHI-PROJECT-25280002
[Book] Pattern Recognition in Bioinformatics --- 7th IAPR International Conference, (PRIB 2012). LNCS 76322012
- Author(s)
  Tetsuo Shibuya, Hisashi Kashima, Jun Sese, and Shandar Ahmad (ed)
- Publisher
  Springer Verlaｇ
- Data Source
  KAKENHI-PLANNED-24106007
[Journal Article] Counting 2-factors of 4-regular bipartite graphs is #P-complete2024
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  LNCS
  
  Volume: -
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K18501
[Journal Article] Affine optimal k-proper connected edge colorings2024
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  Optimization Letters
  
  Volume: -
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K18501
[Journal Article] Counting on rainbow k-connections2024
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  Theory and Applications of Models of Computation
  
  Volume: -
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K18501
[Journal Article] Recognition and proper coloring of unit segment intersection graphs2024
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  Scandinavian Symposium on Algorithm Theory
  
  Volume: -
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K18501
[Journal Article] Counting on rainbow k-connections2024
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  Proc. 2024 Annual Conference on Theory and Applications of Models of CompuProc.
  
  Volume: -
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K28035
[Journal Article] Affine optimal k-proper connected edge colorings2024
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  Optimization Letters
  
  Volume: -
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K28035
[Journal Article] Recognition and proper coloring of unit segment intersection graphs2024
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  Proc. 19th Scandinavian Symposium on Algorithm Theory
  
  Volume: -
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K28035
[Journal Article] Proper colorability of segment intersection graphs2024
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  Journal of Combinatorial Optimization
  
  Volume: -
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K28035
[Journal Article] Counting 2-factors of 4-regular bipartite graphs is #P-complete2024
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  LNCS
  
  Volume: -
- Data Source
  KAKENHI-PROJECT-23K28035
[Journal Article] Genetic algorithm-based feature selection with manifold learning for cancer classification using microarray data2023
- Author(s)
  Wang Zixuan、Zhou Yi、Takagi Tatsuya、Song Jiangning、Tian Yu-Shi、Shibuya Tetsuo
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 24 Issue: 1
- DOI
  10.1186/s12859-023-05267-3
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21827, KAKENHI-PROJECT-23K18501, KAKENHI-PROJECT-21H05052, KAKENHI-PROJECT-23K28035
[Journal Article] Privacy-Preserving Genomic Statistical Analysis Under Local Differential Privacy2023
- Author(s)
  Yamamoto Akito、Shibuya Tetsuo
- Journal Title
  
  LNCS
  
  Volume: 13942 Pages: 40-48
- DOI
  10.1007/978-3-031-37586-6_3
- ISBN
  9783031375859, 9783031375866
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K18501, KAKENHI-PROJECT-23KJ0649, KAKENHI-PROJECT-21H05052, KAKENHI-PROJECT-23K28035
[Journal Article] Unbiased Locally Private Estimator for Polynomials of Laplacian Variables2023
- Author(s)
  Hillebrand Quentin、Suppakitpaisarn Vorapong、Shibuya Tetsuo
- Journal Title
  
  Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining
  
  Volume: - Pages: 741-751
- DOI
  10.1145/3580305.3599537
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K18501, KAKENHI-PUBLICLY-23H04377, KAKENHI-PROJECT-21H05052, KAKENHI-PROJECT-23K28035
[Journal Article] Privacy-Preserving Statistical Analysis of Genomic Data Using Compressive Mechanism with Haar Wavelet Transform2023
- Author(s)
  Yamamoto Akito、Shibuya Tetsuo
- Journal Title
  
  Journal of Computational Biology
  
  Volume: 30 Issue: 2 Pages: 176-188
- DOI
  10.1089/cmb.2022.0246
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21H05052, KAKENHI-PROJECT-20K21827, KAKENHI-PLANNED-20H05967
[Journal Article] Hardness of Bounding Influence via Graph Modification2023
- Author(s)
  Barish Robert D.、Shibuya Tetsuo
- Journal Title
  
  LNCS
  
  Volume: 13878 Pages: 129-143
- DOI
  10.1007/978-3-031-23101-8_9
- ISBN
  9783031231001, 9783031231018
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K21827, KAKENHI-PLANNED-20H05967
[Journal Article] The Fine-Grained Complexity of?Approximately Counting Proper Connected Colorings (Extended Abstract)2023
- Author(s)
  Barish Robert D.、Shibuya Tetsuo
- Journal Title
  
  Combinatorial Optimization and Applications
  
  Volume: - Pages: 123-136
- DOI
  10.1007/978-3-031-49614-1_8
- ISBN
  9783031496134, 9783031496141
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K18501, KAKENHI-PROJECT-21H05052, KAKENHI-PROJECT-23K28035
[Journal Article] Privacy-Preserving Publication of GWAS Statistics using Smooth Sensitivity2023
- Author(s)
  Yamamoto Akito、Shibuya Tetsuo
- Journal Title
  
  Proc. PST
  
  Volume: - Pages: 1-12
- DOI
  10.1109/pst58708.2023.10320160
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K18501, KAKENHI-PROJECT-23KJ0649, KAKENHI-PROJECT-21H05052, KAKENHI-PROJECT-23K28035
[Journal Article] (ε, k)-Randomized Anonymization: ε-Differentially Private Data Sharing with k-Anonymity2023
- Author(s)
  Yamamoto Akito、Kimura Eizen、Shibuya Tetsuo
- Journal Title
  
  Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies
  
  Volume: 1 Pages: 287-297
- DOI
  10.5220/0011665600003414
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21827, KAKENHI-PLANNED-20H05967
[Journal Article] A Joint Permute-and-Flip and Its Enhancement for Large-Scale Genomic Statistical Analysis2023
- Author(s)
  Yamamoto Akito、Shibuya Tetsuo
- Journal Title
  
  IEEE International Conference on Data Mining Workshops
  
  Volume: - Pages: 217-226
- DOI
  10.1109/icdmw60847.2023.00034
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K18501, KAKENHI-PROJECT-23KJ0649, KAKENHI-PROJECT-21H05052, KAKENHI-PROJECT-23K28035
[Journal Article] String Editing Under Pattern Constraints2022
- Author(s)
  Barish Robert D.、Shibuya Tetsuo
- Journal Title
  
  New Trends in Computer Technologies and Applications. ICS 2022. Communications in Computer and Information Science,
  
  Volume: 1723 Pages: 13-24
- DOI
  10.1007/978-981-19-9582-8_2
- ISBN
  9789811995811, 9789811995828
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21827, KAKENHI-PLANNED-20H05967
[Journal Article] Efficient Differentially Private Methods for a Transmission Disequilibrium Test in Genome Wide Association Studies2022
- Author(s)
  Akito Yamamoto, Tetsuo Shibuya
- Journal Title
  
  Pacific Symposium on Biocomputing
  
  Volume: 27 Pages: 85-96
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21827
[Journal Article] Developing Language Resources and NLP Tools for the North Korean Language2022
- Author(s)
  Arda Akdemir, Yeojoo Jeon and Tetsuo Shibuya
- Journal Title
  
  Conference on Language Resources and Evaluation
  
  Volume: 13
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K21827
[Journal Article] Proper Colorability of Segment Intersection Graphs2022
- Author(s)
  Barish Robert D.、Shibuya Tetsuo
- Journal Title
  
  Proc. COCOON
  
  Volume: 1 Pages: 573-584
- DOI
  10.1007/978-3-031-22105-7_51
- ISBN
  9783031221040, 9783031221057
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K21827, KAKENHI-PLANNED-20H05967
[Journal Article] Efficient and Highly Accurate Differentially Private Statistical Genomic Analysis using Discrete Fourier Transform2022
- Author(s)
  Yamamoto Akito、Shibuya Tetsuo
- Journal Title
  
  Proc. The 21st IEEE International Conference on Trust, Security and Privacy in Computing and Communications
  
  Volume: 1 Pages: 525-532
- DOI
  10.1109/trustcom56396.2022.00078
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K21827, KAKENHI-PLANNED-20H05967
[Journal Article] Optimally Confining Lattice Polymers2022
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  Proc. Canadian Conference on Computational Geometry, CCCG 2022
  
  Volume: 2022 Pages: 24-31
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-20H05967
[Journal Article] Developing Language Resources and NLP Tools for the North Korean Language2022
- Author(s)
  Arda Akdemir, Yeojoo Jeon,Tetsuo Shibuya
- Journal Title
  
  Proc. 13th Conference on Language Resources and Evaluation (LREC 2022)
  
  Volume: 13
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05967
[Journal Article] Optimally Confining Lattice Polymers, Proc. Canadian Conference on Computational Geometry2022
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Journal Title
  
  Proc. CCCG
  
  Volume: 1 Pages: 24-31
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21827
[Journal Article] Efficient Differentially Private Methods for a Transmission Disequilibrium Test in Genome Wide Association Studies2022
- Author(s)
  Akito Yamamoto, Tetsuo Shibuya
- Journal Title
  
  Pacific Symposium on Biocomputing 2022
  
  Volume: 2022 Pages: 85-96
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-20H05967
[Journal Article] Privacy-Preserving Statistical Analysis of Genomic Data using Compressive Mechanism with Haar Wavelet Transform2022
- Author(s)
  Akito Yamamoto, Tetsuo Shibuya
- Journal Title
  
  RECOMB Privacy and Security Workshop
  
  Volume: 1
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K21827
[Journal Article] Developing Language Resources and NLP Tools for the North Korean Language2022
- Author(s)
  Arda Akdemir, Yeojoo Jeon and Tetsuo Shibuya
- Journal Title
  
  Proc. 13th Conference on Language Resources and Evaluation
  
  Volume: 1 Pages: 5595-5600
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K21827
[Journal Article] Compression of Multiple k-mer Sets by Iterative SPSS Decomposition2021
- Author(s)
  Kazushi Kitaya, Tetsuo Shibuya
- Journal Title
  
  WABI 2021, LIPIcs
  
  Volume: 201 (12)
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-20H05967
[Journal Article] Compression of Multiple k-mer Sets by Iterative SPSS Decomposition2021
- Author(s)
  Kazushi Kitaya and Tetsuo Shibuya
- Journal Title
  
  Proc. WABI 2021, Leibniz International Proceedings in Informatics (LIPIcs)
  
  Volume: 201(12) Pages: 1-12
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21827
[Journal Article] A Comprehensive Analysis of Subword Contextual Embeddings for Languages with Rich Morphology2021
- Author(s)
  Akdemir Arda、Shibuya Tetsuo、Gungur Tunga
- Journal Title
  
  Advances in Intelligent Systems and Computing
  
  Volume: 1395 Pages: 31-72
- DOI
  10.1007/978-981-16-3357-7_2
- ISBN
  9789811633560, 9789811633577
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K21827
[Journal Article] Differentially Private Linkage Analysis with TDT ? the case of two affected children per family2021
- Author(s)
  Yamamoto Akito、Shibuya Tetsuo
- Journal Title
  
  Proceedings of BIBM
  
  Volume: IEEE Pages: 765-770
- DOI
  10.1109/bibm52615.2021.9669365
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21H05052, KAKENHI-PROJECT-20K21827
[Journal Article] Solving teleportation mazes with limited visibility2021
- Author(s)
  Robert Barish,Tetsuo Shibuya
- Journal Title
  
  The 23rd Thailand-Japan Conference on Discrete and Computational Geometry, Graphs, and Games
  
  Volume: 2021 Pages: 110-111
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-20H05967
[Journal Article] Solving teleportation mazes with limited visibility2021
- Author(s)
  Robert Barish and Tetsuo Shibuya
- Journal Title
  
  The 23rd Thailand-Japan Conference on Discrete and Computational Geometry, Graphs, and Games
  
  Volume: 1 Pages: 110-111
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21827
[Journal Article] UDON: Unsupervised Data SelectiON for Biomedical Entity Recognition2021
- Author(s)
  Akdemir Arda、Shibuya Tetsuo
- Journal Title
  
  Proceedings of 4th International Conference on Computing and Big Data (ICCBD)
  
  Volume: ACM Pages: 1-7
- DOI
  10.1145/3507524.3507525
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21H05052, KAKENHI-PROJECT-20K21827
[Journal Article] Compression of Multiple k-Mer Sets by Iterative SPSS Decomposition2021
- Author(s)
  Kazushi Kitaya and Tetsuo Shibuya
- Journal Title
  
  Proceedings of WABI
  
  Volume: LIPIcs 201
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21H05052
[Journal Article] Efficient Differentially Private Methods for a Transmission Disequilibrium Test in Genome Wide Association Studies2021
- Author(s)
  Yamamoto Akito、Shibuya Tetsuo
- Journal Title
  
  Proceedings of Pacific Symposium on Biocomputing
  
  Volume: World Scientific Pages: 85-96
- DOI
  10.1142/9789811250477_0009
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21H05052
[Journal Article] More practical differentially private publication of key statistics in GWAS2021
- Author(s)
  Yamamoto Akito、Shibuya Tetsuo
- Journal Title
  
  Bioinformatics Advances
  
  Volume: 1 Issue: 1 Pages: 1-10
- DOI
  10.1093/bioadv/vbab004
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21H05052, KAKENHI-PROJECT-20K21827, KAKENHI-PLANNED-20H05967
[Journal Article] Wear Leveling Revisited2020
- Author(s)
  Taku Onodera, Tetsuo Shibuya
- Journal Title
  
  Leibniz International Proceedings in Informatics (LIPIcs)
  
  Volume: 181(65) Pages: 1-17
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21827
[Journal Article] Subword Contextual Embeddings for Languages with Rich Morphology2020
- Author(s)
  Arda Akdemir, Tetsuo Shibuya, Tunga Gungor
- Journal Title
  
  Proc. ICMLA 2020
  
  Volume: 1 Pages: 994-1001
- DOI
  10.1109/icmla51294.2020.00161
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21827, KAKENHI-PROJECT-17H01693
[Journal Article] Transfer Learning for Biomedical Question Answering2020
- Author(s)
  Arda Akdemir, Tetsuo Shibuya
- Journal Title
  
  Proc. CLEF 2020, CEUR Workshop Proceedings
  
  Volume: 2696 Pages: 1-15
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21827
[Journal Article] Transfer Learning for Biomedical Question Answering2020
- Author(s)
  Arda Akdemir, Tetsuo Shibuya
- Journal Title
  
  Proc. CLEF 2020, CEUR Workshop Proceedings
  
  Volume: 2696(66) Pages: 1-15
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H01693
[Journal Article] Wear Leveling Revisited2020
- Author(s)
  Taku Onodera, Tetsuo Shibuya
- Journal Title
  
  Leibniz International Proceedings in Informatics (LIPIcs)
  
  Volume: 181(65) Pages: 1-17
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H01693
[Journal Article] Nanopore base-calling from a perspective of instance segmentation2020
- Author(s)
  Zhang Y-Z, Akdemir A, Tremmel G, Imoto S, Miyano S, Shibuya T, Yamaguchi R.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 23;21(Suppl 3) Issue: S3 Pages: 136-136
- DOI
  10.1186/s12859-020-3459-0
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17H01693, KAKENHI-PROJECT-17K20023
[Journal Article] Application-Oriented Succinct Data Structures for Big Data, The Review of Socionetwork Strategies2019
- Author(s)
  Tetsuo Shibuya
- Journal Title
  
  The Review of Socionetwork Strategies
  
  Volume: 13 Issue: 2 Pages: 227-236
- DOI
  10.1007/s12626-019-00045-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H01693, KAKENHI-PROJECT-17K20023
[Journal Article] FOREWORD2019
- Author(s)
  Yoichi Sasaki, Tetsuo Shibuya, Kimihito Ito, and Hiroki Arimura
- Journal Title
  
  IEICE Trans. Fundamentals
  
  Volume: E102.A Issue: 9 Pages: 986-986
- DOI
  10.1587/transfun.E102.A.986
- NAID
  130007699535
- ISSN
  0916-8508, 1745-1337
- Year and Date
  2019-09-01
- Language
  English
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17H01693, KAKENHI-PROJECT-17K20023
[Journal Article] Succinct Oblivious RAM2018
- Author(s)
  Taku Onodera, Tetsuo Shibuya
- Journal Title
  
  Proc. STACS
  
  Volume: 96
- DOI
  10.4230/LIPIcs.STACS.2018.52
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K20023, KAKENHI-PROJECT-17H01693
[Journal Article] Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks2017
- Author(s)
  Onuki Ritsuko、Yamaguchi Rui、Shibuya Tetsuo、Kanehisa Minoru、Goto Susumu
- Journal Title
  
  PLOS ONE
  
  Volume: 12 Issue: 4 Pages: 0176530-0176530
- DOI
  10.1371/journal.pone.0176530
- NAID
  120006309307
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H01693
[Journal Article] Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks2017
- Author(s)
  Onuki Ritsuko、Yamaguchi Rui、Shibuya Tetsuo、Kanehisa Minoru、Goto Susumu
- Journal Title
  
  PLOS ONE
  
  Volume: 12
- NAID
  120006309307
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K20023
[Journal Article] Fast Classification of Protein Structures by an Alignment-free Kernel2016
- Author(s)
  Taku Onodera, Tetsuo Shibuya
- Journal Title
  
  LNCS
  
  Volume: 9954 Pages: 68-79
- DOI
  10.1007/978-3-319-46049-9_7
- ISBN
  9783319460482, 9783319460499
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25280002, KAKENHI-PLANNED-24106007
[Journal Article] Efficient Approximate 3-Dimensional Point Set Matching Using Root-Mean-Square Deviation Score2015
- Author(s)
  Yoichi Sasaki, Tetsuo Shibuya, Kimihito Ito, and Hiroki Arimura
- Journal Title
  
  LNCS
  
  Volume: 9371 Pages: 191-203
- DOI
  10.1007/978-3-319-25087-8_18
- NAID
  130007699483
- ISBN
  9783319250861, 9783319250878
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25280002
[Journal Article] An O(m log m)-time algorithm for detecting superbubbles2015
- Author(s)
  Wing-Kin Sung, Kunihiko Sadakane, Tetsuo Shibuya, Abha Belorkar, Iana Pyrogova
- Journal Title
  
  IEEE/ACM Transactions on Computational Biology and Bioinformatics
  
  Volume: 12-4 Issue: 4 Pages: 770-777
- DOI
  10.1109/tcbb.2014.2385696
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23240002, KAKENHI-PLANNED-24106007, KAKENHI-PROJECT-25240003, KAKENHI-PROJECT-25280002
[Journal Article] Locating Controlling Regions of Neural Networks Using Constrained Evolutionary Computation2015
- Author(s)
  Mohammad A. Eita, Tetsuo Shibuya, and Amin A. Shoukry
- Journal Title
  
  Proc. 2015 IEEE Congress on Evolutionary Computation
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25280002
[Journal Article] Locating Controlling Regions of Neural Networks Using Constrained Evolutionary Computation2015
- Author(s)
  Mohammad A. Eita, Tetsuo Shibuya, and Amin A. Shoukry
- Journal Title
  
  Proc. 2015 IEEE Congress on Evolutionary Computation (CEC2015)
  
  Volume: 1 Pages: 1581-1588
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25280002
[Journal Article] Malphite: A Convolutional Neural Network and Ensemble Learning Based Protein Secondary Structure Predictor2015
- Author(s)
  Yang Li, Tetsuo Shibuya
- Journal Title
  
  Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
  
  Volume: 1 Pages: 1260-1266
- DOI
  10.1109/bibm.2015.7359861
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25280002
[Journal Article] Improving miRNA Classification Using an Exhaustive Set of Features2014
- Author(s)
  Sherin Moustafa El Gokhy, Tetsuo Shibuya and Amin Shoukry
- Journal Title
  
  The 8th International Conference on Practical Applications of Computational Biology & Bioinformatics
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25280002
[Journal Article] SVEM: a Structural Variant Estimation Method using Multi-Mapped Reads on Breakpoints2014
- Author(s)
  Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya and Masao Nagasaki
- Journal Title
  
  1st International Conference on Algorithms for Computational Biology
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25280002
[Journal Article] Improving miRNA Classification Using an Exhaustive Set of Features2014
- Author(s)
  Sherin Moustafa El Gokhy, Tetsuo Shibuya and Amin Shoukry
- Journal Title
  
  Advances in Intelligent and Soft-Computing
  
  Volume: 294 Pages: 31-39
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-24106007
[Journal Article] VEM: a Structural Variant Estimation Method using Multi-Mapped Reads on Breakpoints2014
- Author(s)
  Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya and Masao Nagasaki
- Journal Title
  
  Lecture Notes in Bioinformatics
  
  Volume: 8542 Pages: 208-219
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25280002
[Journal Article] 統計モデルを活用したビッグデータ検索超高速化2014
- Author(s)
  渋谷哲朗
- Journal Title
  
  電子情報通信学会誌
  
  Volume: 97 Pages: 384-387
- Data Source
  KAKENHI-PROJECT-25280002
[Journal Article] Improving miRNA Classification Using an Exhaustive Set of Features2014
- Author(s)
  Sherin Moustafa El Gokhy, Tetsuo Shibuya and Amin Shoukry
- Journal Title
  
  Advances in Intelligent Systems and Computing
  
  Volume: 294 Pages: 31-39
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25280002
[Journal Article] SVEM: a Structural Variant Estimation Method using Multi-Mapped Reads on Breakpoints2014
- Author(s)
  Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya, Masao Nagasaki
- Journal Title
  
  1st International Conference on Algorithms for Computational Biology (AlCoB 2014)
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23240002
[Journal Article] The Gapped Spectrum Kernel for Support Vector Machines2013
- Author(s)
  Taku Onodera, Tetsuo Shibuya
- Journal Title
  
  Proc. Machine Learning and Data Mining, LNCS
  
  Volume: 7988 Pages: 1-15
- DOI
  10.1007/978-3-642-39712-7_1
- ISBN
  9783642397110, 9783642397127
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25280002
[Journal Article] Detecting Superbubbles in Assembly Graphs2013
- Author(s)
  Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya
- Journal Title
  
  Proceedings of WABI
  
  Volume: LNCS 8126 Pages: 338-348
- DOI
  10.1007/978-3-642-40453-5_26
- ISBN
  9783642404528, 9783642404535
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23240002
[Journal Article] The Gapped Spectrum Kernel for Support Vector Machines2013
- Author(s)
  Taku Onodera, Tetsuo Shibuya
- Journal Title
  
  Proc. of Machine Learning and Data Mining
  
  Volume: LNCS 7988 Pages: 1-15
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-24106007
[Journal Article] Argan - an artificial sequencing tool for simulated data and experimental work2012
- Author(s)
  Mohammed Sahli, Tetsuo Shibuya
- Journal Title
  
  The 4th International Conference on Bioinformatics and Biomedical Technology (ICBBT)
  
  Volume: 29
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23240002
[Journal Article] Max-Shift BM and Max-Shift Horspool: Practical Fast Exact String Matching Algorithms2012
- Author(s)
  Mohammed Sahli, Tetsuo Shibuya
- Journal Title
  
  Journal of Information Processing
  
  Volume: 20 Issue: 2 Pages: 419-425
- DOI
  10.2197/ipsjjip.20.419
- NAID
  130002116439
- ISSN
  1882-6652
- Language
  English
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-24106007
[Journal Article] A Protein Three-Dimensional Substructure Search Program Based on the Lower Bound of a Root Mean Square Deviation Value2012
- Author(s)
  Terashi G, Shibuya T, Takeda-Shitaka M
- Journal Title
  
  Journal of computational biology
  
  Volume: 19(5) Issue: 5 Pages: 493-503
- DOI
  10.1089/cmb.2011.0230
- URL
  http://online.liebertpub.com/doi/abs/10.1089/cmb.2011.0230
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700314, KAKENHI-PLANNED-24106007
[Journal Article] An algorithm for classifying DNA reads2012
- Author(s)
  Mohammed Sahli, Tetsuo Shibuya
- Journal Title
  
  International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB)
  
  Volume: 31 Pages: 59-63
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23240002
[Journal Article] Succinct de Bruijn Graphs2012
- Author(s)
  Alexander Bowe, Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya
- Journal Title
  
  Lecture Notes in Computer Science, Algorithms in Bioinformatics
  
  Volume: LNCS 7534 Pages: 225-235
- DOI
  10.1007/978-3-642-33122-0_18
- ISBN
  9783642331213, 9783642331220
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23240002
[Journal Article] Qamar - A More Accurate DNA Sequencing Error Correcting Algorithm2012
- Author(s)
  Mohammed Sahli, Tetsuo Shibuya
- Journal Title
  
  International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB)
  
  Volume: 31 Pages: 53-58
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23240002
[Journal Article] Fast Hinge Detection Algorithms for Flexible Protein Structures2010
- Author(s)
  Tetsuo Shibuya
- Journal Title
  
  IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol.7, No.2
  
  Pages: 333-341
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20700264
[Journal Article] Geometric Suffix Tree : Indexing Protein 3-D Structures2010
- Author(s)
  Tetsuo Shibuya
- Journal Title
  
  Journal of the ACM 57(3)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20700264
[Journal Article] Geometric Suffix Tree : Indexing Protein 3-D Structures2010
- Author(s)
  Tetsuo Shibuya
- Journal Title
  
  Journal of the ACM Vol.57, No.3, Article No.15
  
  Pages: 1-17
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20700264
[Journal Article] Searching Protein 3-D Structures in Faster Than Linear Time2010
- Author(s)
  Tetsuo Shibuya
- Journal Title
  
  Journal of Computational Biology
  
  Volume: 17(4) Pages: 593-602
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20700264
[Journal Article] Searching Protein 3-D Structures in Linear Time2010
- Author(s)
  Tetsuo Shibuya
- Journal Title
  
  Journal of Computational Biology Vol.17, No.3
  
  Pages: 203-219
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20700264
[Journal Article] Searching Protein 3-D Structures in Faster Than Linear Time2010
- Author(s)
  Tetsuo Shibuya
- Journal Title
  
  Journal of Computational Biology Vol.17, No.4
  
  Pages: 593-602
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20700264
[Journal Article] Linear-Time Protein 3-D Structure Searching with Insertions and Deletions2010
- Author(s)
  Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
- Journal Title
  
  BMC Algorithms for Molecular Biology 5
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20700264
[Journal Article] Linear-Time Protein 3-D Structure Searching with Insertions and Deletions2010
- Author(s)
  Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
- Journal Title
  
  BMC Algorithms for Molecular Biology Vol.5
  
  Pages: 7-7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20700264
[Journal Article] Searching Protein 3-D Structures in Linear Time2010
- Author(s)
  Tetsuo Shibuya
- Journal Title
  
  Journal of Computational Biology 17(3)
  
  Pages: 203-219
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20700264
[Journal Article] Fast Hinge Detection Algorithms for Flexible Protein Structures2010
- Author(s)
  Tetsuo Shibuya
- Journal Title
  
  IEEE/ACM Transactions on Computational Biology and Bioinformatics
  
  Volume: 7(2) Pages: 333-341
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20700264
[Presentation] Communication Cost Reduction for Subgraph Counting under Local Differential Privacy via Hash Functions2024
- Author(s)
  Quentin Hillebrand, Vorapong Suppakitpaisarn, and Tetsuo Shibuya
- Organizer
  情報処理学会　第197回アルゴリズム研究会
- Data Source
  KAKENHI-PROJECT-23K28035
[Presentation] Communication Cost Reduction for Subgraph Counting under Local Differential Privacy via Hash Functions2024
- Author(s)
  Quentin Hillebrand, Vorapong Suppakitpaisarn, and Tetsuo Shibuya
- Organizer
  情報処理学会アルゴリズム研究会
- Data Source
  KAKENHI-PROJECT-23K18501
[Presentation] Efficient and Highly Accurate Differentially Private Statistical Genomic Analysis using Discrete Fourier Transform2023
- Author(s)
  Akito Yamamoto, Tetsuo Shibuya
- Organizer
  IPSJ CSEC-100
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] Toward Privacy Preserving Biomedical Data Analysis2023
- Author(s)
  Tetsuo Shibuya
- Organizer
  the 10th International Conference on Biomedical and Bioinformatics Engineering
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K18501
[Presentation] 個人医療時代のバイオインフォマティクス2023
- Author(s)
  渋谷哲朗
- Organizer
  学習院桜友回寄付講座（生命情報社会学）シンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] 医療情報における差分プライベートなk匿名化について2023
- Author(s)
  Akito Yamamoto, Eizen Kimura, Tetsuo Shibuya
- Organizer
  第43回　医療情報学連合大会
- Data Source
  KAKENHI-PROJECT-23K18501
[Presentation] 医療情報における差分プライベートなk匿名化について2023
- Author(s)
  Akito Yamamoto, Eizen Kimura, Tetsuo Shibuya
- Organizer
  第43回　医療情報学連合大会
- Data Source
  KAKENHI-PROJECT-23K28035
[Presentation] Toward Privacy Preserving Biomedical Data Analysis2023
- Author(s)
  Tetsuo Shibuya
- Organizer
  the 10th International Conference on Biomedical and Bioinformatics Engineering
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K28035
[Presentation] Differentially Private Methods in Bioinformatics2023
- Author(s)
  Tetsuo Shibuya
- Organizer
  Combinatorial Problems of Strings and Graphs and Their Applications in Bioinformatics
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] Toward Privacy Preserving Biomedical Data Analysis2023
- Author(s)
  渋谷哲朗
- Organizer
  the 10th International Conference on Biomedical and Bioinformatics Engineering
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21H05052
[Presentation] Counting on a rainbow connection2022
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Organizer
  Italian Conference on Theoretical Computer Science
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] Differentially Private Methods in Bioinformatics2022
- Author(s)
  Tetsuo Shibuya
- Organizer
  Combinatorial Problems of Strings and Graphs and Their Applications in Bioinformatics, Part 2, April 6, 2022, Singapore
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05967
[Presentation] Privacy-Preserving Statistical Analysis of Genomic Data using Compressive Mechanism with Haar Wavelet Transform2022
- Author(s)
  Akito Yamamoto, Tetsuo Shibuya
- Organizer
  RECOMB Privacy and Security Workshop, 2022. May 24. La Jolla, USA.
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05967
[Presentation] Differentially Private Methods in Bioinformatics2022
- Author(s)
  Tetsuo Shibuya
- Organizer
  Combinatorial Problems of Strings and Graphs and Their Applications in Bioinformatics, Part 2
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05967
[Presentation] Privacy-Preserving Statistical Analysis of Genomic Data using Compressive Mechanism with Haar Wavelet Transform2022
- Author(s)
  Akito Yamamoto, Tetsuo Shibuya
- Organizer
  RECOMB Privacy and Security Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] Privacy preserving technologies toward safe medical science2022
- Author(s)
  Tetsuo Shibuya
- Organizer
  The 47th Annual Meeting of the Japanese Society for Investigative Dermatology (JSID)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] Privacy-Preserving Statistical Analysis of Genomic Data using Compressive Mechanism with Haar Wavelet Transform2022
- Author(s)
  Akito Yamamoto, Tetsuo Shibuya
- Organizer
  RECOMB Privacy and Security Workshop, 2022
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05967
[Presentation] Counting on a rainbow connection2022
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Organizer
  Italian Conference on Theoretical Computer Science, 7-9 September, 2022, Rome, Italy.
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05967
[Presentation] 大規模医療データが変えるこれからの医科学研究2022
- Author(s)
  渋谷哲朗
- Organizer
  シンポジウム『超高齢社会を考えるⅥ』
- Invited
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] Counting on a rainbow connection2022
- Author(s)
  Robert Barish, Tetsuo Shibuya
- Organizer
  Italian Conference on Theoretical Computer Science
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05967
[Presentation] UDON: Unsupervised Data SelectiON for Biomedical Entity Recognition2021
- Author(s)
  Arda Akdemir, Tetsuo Shibuya
- Organizer
  The 27th East Asia Joint Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] Efficient Differentially Private Methods for a Transmission Disequilibrium Test2021
- Author(s)
  Akito Yamamoto, Tetsuo Shibuya
- Organizer
  第６７回バイオ情報学研究会
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] Algorithmic Challenges for Biomedical Big Data2021
- Author(s)
  Tetsuo Shibuya
- Organizer
  The 11th International Conference on Bioscience, Biochemistry and Bioinformatics
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H01693
[Presentation] Algorithmic Challenges for Biomedical Big Data2021
- Author(s)
  Tetsuo Shibuya
- Organizer
  The 11th International Conference on Bioscience, Biochemistry and Bioinformatics
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] スパコンシステム「SHIROKANE」とゲノム医療2020
- Author(s)
  渋谷哲朗
- Organizer
  第9回生命医薬情報連合大会
- Invited
- Data Source
  KAKENHI-PROJECT-17H01693
[Presentation] スパコンシステム「SHIROKANE」とゲノム医療2020
- Author(s)
  渋谷哲朗
- Organizer
  第9回生命医薬情報連合大会
- Invited
- Data Source
  KAKENHI-PROJECT-20K21827
[Presentation] Nanopore base-calling from a perspective of instance segmentation2019
- Author(s)
  Yao-zhong Zhang, Arda Akdemir, Georg Tremmel, Seiya Imoto, Satoru Miyano, Tetsuo Shibuya, Rui Yamaguchi
- Organizer
  ISMB-ECCB 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K20023
[Presentation] Nanopore base-calling from a perspective of instance segmentation2019
- Author(s)
  Yao-zhong Zhang, Arda Akdemir, Georg Tremmel, Seiya Imoto, Satoru Miyano, Tetsuo Shibuya, Rui Yamaguchi
- Organizer
  ISMB-ECCB 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H01693
[Presentation] 簡潔Oblivious RAM2018
- Author(s)
  小野寺拓，渋谷哲朗
- Organizer
  電子情報通信学会　情報セキュリティ研究会
- Data Source
  KAKENHI-PROJECT-17K20023
[Presentation] 簡潔Oblivious RAM2018
- Author(s)
  小野寺拓，渋谷哲朗
- Organizer
  電子情報通信学会　情報セキュリティ研究会
- Data Source
  KAKENHI-PROJECT-17H01693
[Presentation] 重み付き有向非巡回グラフに対する効率良いテキスト索引の構築アルゴリズム2018
- Author(s)
  山岸大騎，髙木拓也，渋谷哲朗，有村博紀
- Organizer
  第17回情報科学技術フォーラム
- Data Source
  KAKENHI-PROJECT-17K20023
[Presentation] 重み付き有向非巡回グラフに対する効率良いテキスト索引の構築アルゴリズム2018
- Author(s)
  山岸大騎，髙木拓也，渋谷哲朗，有村博紀．
- Organizer
  第17回情報科学技術フォーラム
- Data Source
  KAKENHI-PROJECT-17H01693
[Presentation] Algorithmic Challenges for Bio Big Data2017
- Author(s)
  Tetsuo Shibuya
- Organizer
  UTokyo-IITM Workshop
- Place of Presentation
  Chennai, India
- Year and Date
  2017-03-13
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25280002
[Presentation] Algorithmic Challenge for Bio Big Data2017
- Author(s)
  Tetsuo Shibuya
- Organizer
  UTokyo-IITM workshop
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-24106007
[Presentation] Fast Classification of Protein Structures by an Alignment-free Kernel2016
- Author(s)
  Taku Onodera, Tetsuo Shibuya
- Organizer
  The 23rd International Symposium on String Processing and Information Retrieval
- Place of Presentation
  Beppu, Japan
- Year and Date
  2016-10-18
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25280002
[Presentation] Algorithm Design Paradigm Shift Needed for Bio Big Data2015
- Author(s)
  Tetsuo Shibuya
- Organizer
  Genomic Medicine 2015
- Place of Presentation
  Ho Chi Minh, Vietnam
- Year and Date
  2015-07-21
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25280002
[Presentation] Algorithmic Challenges to Bio Big Data,2015
- Author(s)
  Tetsuo Shibuya
- Organizer
  The 11th International Workshop on Advanced Genomics
- Place of Presentation
  一橋講堂(東京都千代田区)
- Year and Date
  2015-05-22
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25280002
[Presentation] Efficient Approximate 3-Dimensional Point Set Matching and Its Application to Molecular Pattern Matching2015
- Author(s)
  Yoichi Sasaki, Tetsuo Shibuya, Kimito Ito, Hiroki Arimura
- Organizer
  情報処理学会　バイオ情報学研究会
- Place of Presentation
  沖縄科学技術大学院大学(沖縄県国頭郡)
- Year and Date
  2015-06-15
- Data Source
  KAKENHI-PROJECT-25280002
[Presentation] Malphite: A Convolutional Neural Network and Ensemble Learning Based Protein Secondary Structure Predictor2015
- Author(s)
  Yang Li, Tetsuo Shibuya
- Organizer
  情報処理学会　バイオ情報学研究会
- Place of Presentation
  京都大学iPS細胞研究所(京都府京都市)
- Year and Date
  2015-12-07
- Data Source
  KAKENHI-PROJECT-25280002
[Presentation] Designing Faster Algorithms For Big Data2014
- Author(s)
  Tetsuo Shibuya
- Organizer
  UK-Japan Workshop on Big Data
- Place of Presentation
  英国大使館、東京
- Invited
- Data Source
  KAKENHI-PROJECT-25280002
[Presentation] Fast Indexing Methods for Protein 3-D Structure Searching2013
- Author(s)
  Tetsuo Shibuya
- Organizer
  NII Shonan Seminar 29
- Place of Presentation
  Shonan Village Center, Kanagawa
- Invited
- Data Source
  KAKENHI-PROJECT-25280002
[Presentation] Detecting Superbubbles in Assembly Graphs2013
- Author(s)
  Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya
- Organizer
  情報処理学会バイオ情報学研究会
- Place of Presentation
  北海道大学
- Data Source
  KAKENHI-PROJECT-23240002
[Presentation] タンパク質構造比較アルゴリズム2012
- Author(s)
  渋谷哲朗
- Organizer
  第35回日本分子生物学会
- Place of Presentation
  福岡
- Year and Date
  2012-12-11
- Data Source
  KAKENHI-PLANNED-24106007
[Presentation] Compressing de Bruijn Graphs2012
- Author(s)
  Alexander Bowe, Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya
- Organizer
  電子情報通信学会技術報告COMP研究会
- Place of Presentation
  法政大学
- Year and Date
  2012-09-03
- Data Source
  KAKENHI-PLANNED-24106007
[Presentation] 不連続な部分構造に基づく文字列カーネルとそのタンパク質の分類への応用2012
- Author(s)
  小野寺拓，渋谷哲朗
- Organizer
  情報処理学会バイオ情報学研究会
- Place of Presentation
  東北大学
- Year and Date
  2012-10-31
- Data Source
  KAKENHI-PLANNED-24106007
[Presentation] Statistical Model-based Algorithm Design Framework for Faster Protein Structure Database Searching2010
- Author(s)
  Tetsuo Shibuya
- Organizer
  The 2010 Annual Conference of the Japanese Society for Bioinformatics
- Place of Presentation
  九州大学福岡県福岡市
- Year and Date
  2010-12-15
- Data Source
  KAKENHI-PROJECT-20700264
[Presentation] Searching Protein 3-D Structures in Linear Time2009
- Author(s)
  Tetsuo Shibuya
- Organizer
  13th Annual International Conference on Research in Computational Molecular Biology
- Place of Presentation
  米国アリゾナ州ツーソン
- Year and Date
  2009-05-23
- Data Source
  KAKENHI-PROJECT-20700264
[Presentation] 線形時間タンパク質3次元構造探索アルゴリズム2009
- Author(s)
  渋谷哲朗
- Organizer
  情報処理学会アルゴリズム研究会 pp.25-32
- Place of Presentation
  IPSJ SIG Notes SIGAL 123-4
- Data Source
  KAKENHI-PROJECT-20700264
[Presentation] Linear-Time Protein 3-D Structure Searching with Insertions and Deletions2009
- Author(s)
  Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
- Organizer
  9th Workshop on Algorithms in Bioinformatics
- Place of Presentation
  米国ペンシルベニア州フィラデルフィア
- Year and Date
  2009-09-12
- Data Source
  KAKENHI-PROJECT-20700264
[Presentation] Linear-Time Protein 3-D Structure Searching with Insertions and Deletions2009
- Author(s)
  Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
- Organizer
  9th Workshop on Algorithms in Bioinformatics (WABI 2009) vol.5724, pp.310-320
- Place of Presentation
  LNCS
- Data Source
  KAKENHI-PROJECT-20700264
[Presentation] 線形時間タンパク質3次元構造探索アルゴリズム2009
- Author(s)
  渋谷哲朗
- Organizer
  情報処理学会アルゴリズム研究会
- Place of Presentation
  小樽商科大学
- Year and Date
  2009-03-05
- Data Source
  KAKENHI-PROJECT-20700264
[Presentation] Searching Protein 3-D Structures in Linear Time2009
- Author(s)
  Tetsuo Shibuya
- Organizer
  Proc. 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2009) pp.1-15最優秀論文賞
- Place of Presentation
  LNCS 5817 (LNBI 5541)
- Data Source
  KAKENHI-PROJECT-20700264
[Presentation] Detecting Superbubbles in Assembly Graphs,
- Author(s)
  Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya
- Organizer
  情報処理学会バイオ情報学研究会, 2013-BIO-35
- Place of Presentation
  東京
- Data Source
  KAKENHI-PLANNED-24106007
[Presentation] Designing Faster Algorithms For Big Data
- Author(s)
  Tetsuo Shibuya
- Organizer
  UK-Japan Workshop on Big Data
- Place of Presentation
  英国大使館　東京
- Invited
- Data Source
  KAKENHI-PLANNED-24106007
[Presentation] Fast Indexing Methods for Protein 3-D Structure Searching
- Author(s)
  Tetsuo Shibuya
- Organizer
  NII Shonan Seminar 29: Compact Data Structures for Big Data,
- Place of Presentation
  湘南セミナーハウス
- Invited
- Data Source
  KAKENHI-PLANNED-24106007
[Presentation] Designing Faster Algorithms For Big Data,
- Author(s)
  Tetsuo Shibuya
- Organizer
  UK-Japan Workshop on Big Data,
- Place of Presentation
  東京
- Invited
- Data Source
  KAKENHI-PLANNED-24106007
[Presentation] Structural Variant Estimation Method using Multi-Mapped Reads on Breakpoints
- Author(s)
  Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya and Masao Nagasaki
- Organizer
  1st International Conference on Algorithms for Computational Biology (AlCoB)
- Place of Presentation
  Catalunya Campus (Tarragona, Spain)
- Year and Date
  2014-07-01 – 2014-07-03
- Data Source
  KAKENHI-PROJECT-23240002

1. SADAKANE Kunihiko (20323090)

# of Collaborated Projects: 5 results

# of Collaborated Products: 6 results
2. 坂本比呂志 (50315123)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. 清水佳奈 (60367050)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. 申吉浩 (60523587)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
5. FUKUNAGA Alex (90452002)

# of Collaborated Projects: 1 results

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6. HU Zhenjiang (50292769)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. Tokuyama Takeshi (40312631)

# of Collaborated Projects: 1 results

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8. YAMANAKA Katsuhisa (60508836)

# of Collaborated Projects: 1 results

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9. 浅野哲夫 (90113133)

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10. 宇野毅明 (00302977)

# of Collaborated Projects: 1 results

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11. 堀山貴史 (60314530)

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12. 神保洸貴 (80966630)

# of Collaborated Projects: 1 results

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13. 牧野和久 (60294162)

# of Collaborated Projects: 1 results

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14. 小野廣隆 (00346826)

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15. 玉置卓 (40432413)

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16. 瀧本英二 (50236395)

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17. 河村彰星 (20600117)

# of Collaborated Projects: 1 results

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18. RAJABY RAMESH

# of Collaborated Projects: 1 results

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19. YAMAGUCHI Rui

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
20. TERASHI Genki

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# of Collaborated Products: 1 results
21. 井元清哉

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# of Collaborated Products: 1 results
22. 張耀中

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23. 宮野悟

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# of Collaborated Products: 1 results

Shibuya Tetsuo 渋谷 哲朗

SHIBUYA Tetsuo 渋谷 哲朗

Research Projects

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情報量最適な大規模データ差分プライバシー技術の開発Principal Investigator

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Differential Privacy for Personalized Medicine using Large Pedigree DataPrincipal Investigator

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Toward the accurate large-scale structural variation detection by short read sequencersPrincipal Investigator

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圧縮秘匿計算による大規模データ処理

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Big Data Processing with Compressed Secure Computation

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Effcient and secure search via graph annymization techniques for large individual genome databasePrincipal Investigator

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アルゴリズム基礎理論の追究・発展

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Development of kinship estimation methods on country-wide-size genome database for familial disease analysesPrincipal Investigator

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Development of SMAD for big query on big dataPrincipal Investigator

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Fast Similarity Search on Big Data based on SMAD and its applicationsPrincipal Investigator

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Development towards innovative data structure utilizing methodology of limit of computation

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Development of General Computation Models for Many-core Environments

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Fast and Flexible Searching Methods for Protein 3-D Structure Databases and Their ApplicationsPrincipal Investigator

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Shibuya Tetsuo 渋谷哲朗

SHIBUYA Tetsuo 渋谷哲朗