Okuda Masahiko 奥田昌彦

… Alternative Names

OKUDA Masahiko 奥田昌彦

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Researcher Number	60448686
Other IDs
Affiliation (Current)	2025: 横浜市立大学, 生命医科学研究科, 特任准教授
Affiliation (based on the past Project Information) *help	2021 – 2024: 横浜市立大学, 生命医科学研究科, 特任准教授 2016 – 2019: 横浜市立大学, 生命医科学研究科, 特任准教授 2009 – 2013: Yokohama City University, 生命ナノシステム科学研究科, 特任助教 2008: Yokohama City University, 国際総合科学研究科, 特任助教 2007: Yokohama City University, 国際総合科学研究科, 客員研究員
Review Section/Research Field	Principal Investigator Structural biochemistry / Basic Section 43020:Structural biochemistry-related Except Principal Investigator Basic Section 43020:Structural biochemistry-related
Keywords	Principal Investigator NMR / 立体構造 / 基本転写因子 / RNAポリメラーゼ / タンパク質 / 転写 / 構造生物学 / タンパク複合体 / 遺伝子発現 / タンパク質間相互作用 … More / RNAポリメラーゼII / 複合体 / 溶液構造 / 天然変性領域 / 転写開始 / TFIIH / TFIIE / 基本転写 / 遣伝子発現 / 蛋白質 / 核磁気共鳴法 … More Except Principal Investigator NMR / ヘテロクロマチン / ユークロマチン / 構造生物学 / ＮＭＲ / クロマチン構造 Less

RNAポリメラーゼと基本転写因子TFIIHの特異的相互作用の普遍性と特異性Principal Investigator
- Principal Investigator
  
  奥田昌彦
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43020:Structural biochemistry-related
- Research Institution
  Yokohama City University
クロマチン中の揺らいでいる領域の機能構造解析
- Principal Investigator
  
  西村善文
- Project Period (FY)
  2023 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43020:Structural biochemistry-related
- Research Institution
  Yokohama City University
ヒトRNAポリメラーゼと基本転写因子TFIIHとの複合体の構造モデルの構築Principal Investigator
- Principal Investigator
  
  奥田昌彦
- Project Period (FY)
  2021 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43020:Structural biochemistry-related
- Research Institution
  Yokohama City University
Structural study for the complex between human RNA polymerase II and the general transcription factor TFIIH by NMRPrincipal Investigator
- Principal Investigator
  
  Okuda Masahiko
- Project Period (FY)
  2016 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Structural biochemistry
- Research Institution
  Yokohama City University
NMR study for the whole structure of human general transcription factor TFIIEPrincipal Investigator
- Principal Investigator
  
  OKUDA Masahiko
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Structural biochemistry
- Research Institution
  Yokohama City University
NMR structural analysis for the whole structure of human general transcription factor, TFIIE.Principal Investigator
- Principal Investigator
  
  OKUDA Masahiko
- Project Period (FY)
  2009 – 2010
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Structural biochemistry
- Research Institution
  Yokohama City University
Structural analysis of domains from human general transcription factor, TFIIE for the determination of the complete structure.Principal Investigator
- Principal Investigator
  
  OKUDA Masahiko
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Structural biochemistry
- Research Institution
  Yokohama City University

All 2023 2022 2021 2011 2010 2009 2008 2007

All Journal Article Presentation

[Journal Article] Structural polymorphism of the PH domain in TFIIH2023
- Author(s)
  Okuda Masahiko、Nishimura Yoshifumi
- Journal Title
  
  Bioscience Reports
  
  Volume: 43 Issue: 7
- DOI
  10.1042/bsr20230846
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K06035
[Journal Article] Dynamic structures of intrinsically disordered proteins related to the general transcription factor TFIIH, nucleosomes, and histone chaperones2022
- Author(s)
  Okuda Masahiko、Tsunaka Yasuo、Nishimura Yoshifumi
- Journal Title
  
  Biophysical Reviews
  
  Volume: 14 Issue: 6 Pages: 1449-1472
- DOI
  10.1007/s12551-022-01014-9
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21K06021, KAKENHI-PROJECT-21K06035, KAKENHI-PROJECT-18K06064
[Journal Article] Structural insight into the TFUE/THIE1 interaction : TFIIE and p53 share the binding region on TFIIH2008
- Author(s)
  Okuda, M., Tanaka, A, Satoh, M., Mizuta, S., Takazawa, M., Ohkuma, Y., Nishimura, Y.
- Journal Title
  
  The EMBO Journal 27
  
  Pages: 1161-1171
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19770090
[Journal Article] Novel structural and functional mode of a knot essential for RNA binding activity of the Esal presumed chromodomain2008
- Author(s)
  Shimojo, H., Sano, N., Moriwaki, Y., Okuda, M., Horikoshi, M., Nishimura, Y.
- Journal Title
  
  Journal of Molecular Biology 378
  
  Pages: 987-1001
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19770090
[Journal Article] Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain.2008
- Author(s)
  Shimojo, H., Sano, N., Moriwaki, Y., Okuda, M., Horikoshi, M., Nishimura, Y.
- Journal Title
  
  J. Mol. Biol. 378
  
  Pages: 987-1001
- Data Source
  KAKENHI-PROJECT-19770090
[Journal Article] Structural characterization of human general transcription factor TFIIF in solution2008
- Author(s)
  Akashi, S., Nagakura, S., Yamamoto, S., Okuda, M., Ohkuma, Y., Nishimura, Y.
- Journal Title
  
  Protein Science 17
  
  Pages: 389-400
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19770090
[Journal Article] Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH.2008
- Author(s)
  Okuda M., Tanaka A., Satoh M., Mizuta S., Takazawa M., Ohkuma Y., Nishimura Y.
- Journal Title
  
  The EMBO Journal 27
  
  Pages: 1161-1171
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19770090
[Journal Article] Structural insight into the TFIIE/TFIIH interaction : TFIIE and p53 share the binding region on TFIIH.2008
- Author(s)
  Okuda, M., Tanaka, A., Satoh, M., Mizuta, S., Takazawa, M., Ohkuma, Y., Nishimura, Y.
- Journal Title
  
  EMBO J. 27
  
  Pages: 1161-1171
- Data Source
  KAKENHI-PROJECT-19770090
[Journal Article] 基本転写因子TmEの構造とTFIIHとの相互作用2008
- Author(s)
  奥田昌彦、西村善文
- Journal Title
  
  生化学 80
  
  Pages: 501-510
- Data Source
  KAKENHI-PROJECT-19770090
[Journal Article] 基本転写因子TFIIEの構造とTFIIHとの相互作用2008
- Author(s)
  奥田昌彦、西村善文
- Journal Title
  
  生化学特集号 80
  
  Pages: 501-510
- NAID
  10021192114
- Data Source
  KAKENHI-PROJECT-19770090
[Journal Article] Structural characterization of human general transcription factor TFIIF in solution.2008
- Author(s)
  Akashi, S., Nagakura, S., Yamamoto, S., Okuda, M., Ohkuma, Y., Nishimura, Y.,
- Journal Title
  
  Protein Sci. 17
  
  Pages: 389-400
- Data Source
  KAKENHI-PROJECT-19770090
[Journal Article] Structural polymorphism of chromodomains in Chd1.2007
- Author(s)
  Okuda, M., Horikoshi, M., Nishimura, Y.
- Journal Title
  
  J Mol Biol. 365
  
  Pages: 1047-1062
- Data Source
  KAKENHI-PROJECT-19770090
[Presentation] ヒトRNAポリメラーゼと基本転写/修復因子TFIIHの新たな相互作用の構造生物学的研究2022
- Author(s)
  奥田昌彦, 諏訪哲史, 鈴木秀文, 山口雄輝, 西村善文
- Organizer
  日本分子生物学会
- Data Source
  KAKENHI-PROJECT-21K06035
[Presentation] RNAポリメラーゼと基本転写/修復因子TFIIHの新たな相互作用2021
- Author(s)
  奥田昌彦、諏訪哲史、鈴木秀文、山口雄輝、西村善文
- Organizer
  第39回染色体ワークショップ・第19回核ダイナミクス研究会
- Data Source
  KAKENHI-PROJECT-21K06035
[Presentation] 本転写因子TFIIEαのイオンモビリティ質量分析2011
- Author(s)
  奥田昌彦、廣瀬賢治、川瀬泰司、押方基二、西村善文基
- Organizer
  日本生化学学会
- Place of Presentation
  国立京都国際会館
- Year and Date
  2011-09-23
- Data Source
  KAKENHI-PROJECT-23570144
[Presentation] 基本転写因子TFIIEαのイオンモビリティ質量分析2011
- Author(s)
  奥田昌彦、廣瀬賢治、川瀬泰司、押方基二、西村善文
- Organizer
  日本生化学学会
- Place of Presentation
  国立京都国際会館
- Data Source
  KAKENHI-PROJECT-23570144
[Presentation] Structural analysis for 85 kDa protein complex, general transcription factor TFIIE by NMR spectroscopy2011
- Author(s)
  Okuda M, Moriwaki Y, Kataoka M, Nagadoi A, Tanaka A, OhkumaY, Nishimura Y.
- Organizer
  The International Symposium on Nuclear Magnetic Resonance
- Place of Presentation
  Osanbashi Hall (Yokohama, Japan)
- Year and Date
  2011-11-16
- Data Source
  KAKENHI-PROJECT-23570144
[Presentation] NMR STRUCTURE OF A GENERAL TRANSCRIPTION FACTOR TFIIE2010
- Author(s)
  西村善文, 奥田昌彦
- Organizer
  XXIVth ICMRBS(International Conference on Magnetic Resonance in Biological Systems)
- Place of Presentation
  ケアンズ、ケアンズコンベンションセンター(オーストラリア)
- Data Source
  KAKENHI-PROJECT-21770121
[Presentation] 基本転写因子TFIIEとそれと相互作用するタンパク質群の機能解析2010
- Author(s)
  田中亜紀, 水田翔子, 奥田昌彦, 西村善文, 大熊芳明
- Organizer
  ターゲットタンパク研究プログラム研究交流会
- Place of Presentation
  東京国際フォーラム(東京都)
- Year and Date
  2010-03-05
- Data Source
  KAKENHI-PROJECT-21770121
[Presentation] 転写制御因子、ヒストン修飾因子の構造生物学2010
- Author(s)
  長土居有隆, 奥田昌彦, 明石知子, 西村善文
- Organizer
  ターゲットタンパク研究プログラム研究交流会
- Place of Presentation
  東京国際フォーラム(東京都)
- Year and Date
  2010-03-05
- Data Source
  KAKENHI-PROJECT-21770121
[Presentation] NMR STRUCTURE OF A GENERAL TRANSCRIPTION FACTOR TFIIE2010
- Author(s)
  Y.Nishimura, M.Okuda
- Organizer
  XXIVth ICMRBS (International Conference on Magnetic Resonance in Biological Systems)
- Place of Presentation
  ケアンズコンベンションセンター(オーストラリア・ケアンズ)
- Year and Date
  2010-08-26
- Data Source
  KAKENHI-PROJECT-21770121
[Presentation] 基本転写因子TFIIEとそれと相互作用するタンパク質群の機能解析2010
- Author(s)
  田中亜紀, 水田翔子, 奥田昌彦, 西村善文, 大熊芳明
- Organizer
  ターゲットタンパク研究プログラム基本生命WG班会議
- Place of Presentation
  新神戸(兵庫県)
- Data Source
  KAKENHI-PROJECT-21770121
[Presentation] 転写制御因子、ピストン修飾因子の構造生物学2010
- Author(s)
  長土居有隆, 奥田昌彦, 明石知子, 西村善文
- Organizer
  ターゲットタンパク研究プログラム基本生命WG班会議
- Place of Presentation
  新神戸(兵庫県)
- Data Source
  KAKENHI-PROJECT-21770121
[Presentation] ヒト基本転写因子TFIIE alpha 酸性ドメインの動的構造解析2009
- Author(s)
  小松正史, 奥田昌彦, 長土居有隆, 菅瀬謙治, 西村善文
- Organizer
  第48回NMR討論会
- Place of Presentation
  九州大学医学部百年講堂(福岡県)
- Data Source
  KAKENHI-PROJECT-21770121
[Presentation] Intrinsically Disordered Transcription related Proteins2009
- Author(s)
  奥田昌彦, 長土居有隆, 小松正史, 西村善文
- Organizer
  第3回アジア-太平洋NMRシンポジウム(APNMR)
- Place of Presentation
  Ramada Plaza Jeju Hotel(韓国)
- Data Source
  KAKENHI-PROJECT-21770121
[Presentation] ヒト基本転写因子TFIIEαの酸性ドメインとヒト基本転写因子TFIIHp62のPHドメインとの複合体の溶液構造2008
- Author(s)
  奥田昌彦、田中亜紀、佐藤真奈美、水田翔子、高澤学、大熊芳明、西村善文
- Organizer
  第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
- Place of Presentation
  兵庫県神戸市、神戸ポートアイランド
- Year and Date
  2008-12-10
- Data Source
  KAKENHI-PROJECT-19770090
[Presentation] ヒト基本転写因子TFIIEαの酸性ドメインとヒト基本転写因子TFIIH p62のPHドメインとの複合体の溶液構造2008
- Author(s)
  奥田昌彦、田中亜紀、佐藤真奈美、水田翔子、高澤学、大熊芳明、西村善文
- Organizer
  第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
- Place of Presentation
  兵庫県神戸市、神戸ポートアイランド
- Year and Date
  2008-12-10
- Data Source
  KAKENHI-PROJECT-19770090
[Presentation] NMR Studies on the Interaction between the General Transcription Factors2008
- Author(s)
  Okuda, M., Tanaka, A., Satoh, M., Mizuta, S., Takazawa, M., Ohkuma, Y., Nishimura, Y.
- Organizer
  TFIIE and TFIIH XXIIIrd ICMRBS Conference
- Place of Presentation
  米国、カリフォルニア州、サンディエゴ、シェラトンホテル
- Year and Date
  2008-08-26
- Data Source
  KAKENHI-PROJECT-19770090
[Presentation] NMR Studies on the Interaction between the General Transcription Factors, TFIIE and TFIIH2008
- Author(s)
  Okuda, M., Tanaka, k, Satoh, M., Mizuta, S., Takazawa, M., Ohkuma, Y., Nishimura, Y.
- Organizer
  XXIIIrd ICMRBS Conference
- Place of Presentation
  米国、カリフォルニア州、サンディエゴ、シェラトンホテル
- Year and Date
  2008-08-26
- Data Source
  KAKENHI-PROJECT-19770090

1. 西村善文 (70107390)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. 栗田順一 (90752452)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 下條優佳 (10728231)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. TSUNAKA Yasuo

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Okuda Masahiko 奥田 昌彦

OKUDA Masahiko 奥田 昌彦

Research Projects

Research Products

Co-Researchers

RNAポリメラーゼと基本転写因子TFIIHの特異的相互作用の普遍性と特異性Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

クロマチン中の揺らいでいる領域の機能構造解析

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

ヒトRNAポリメラーゼと基本転写因子TFIIHとの複合体の構造モデルの構築Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Structural study for the complex between human RNA polymerase II and the general transcription factor TFIIH by NMRPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

NMR study for the whole structure of human general transcription factor TFIIEPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

NMR structural analysis for the whole structure of human general transcription factor, TFIIE.Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Structural analysis of domains from human general transcription factor, TFIIE for the determination of the complete structure.Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Structural polymorphism of the PH domain in TFIIH2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Dynamic structures of intrinsically disordered proteins related to the general transcription factor TFIIH, nucleosomes, and histone chaperones2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Structural insight into the TFUE/THIE1 interaction : TFIIE and p53 share the binding region on TFIIH2008

Author(s)

Journal Title

Data Source

[Journal Article] Novel structural and functional mode of a knot essential for RNA binding activity of the Esal presumed chromodomain2008

Author(s)

Journal Title

Data Source

[Journal Article] Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain.2008

Author(s)

Journal Title

Data Source

[Journal Article] Structural characterization of human general transcription factor TFIIF in solution2008

Author(s)

Journal Title

Data Source

[Journal Article] Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH.2008

Author(s)

Journal Title

Data Source

[Journal Article] Structural insight into the TFIIE/TFIIH interaction : TFIIE and p53 share the binding region on TFIIH.2008

Author(s)

Journal Title

Okuda Masahiko 奥田昌彦

OKUDA Masahiko 奥田昌彦