INOUE FUMITAKA 井上詞貴

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Inoue Fumitaka 井上詞貴

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Researcher Number	60525369
Other IDs
Affiliation (Current)	2025: 京都大学, 高等研究院, 特定准教授
Affiliation (based on the past Project Information) *help	2021 – 2024: 京都大学, 高等研究院, 特定准教授
Review Section/Research Field	Principal Investigator Basic Section 43050:Genome biology-related Except Principal Investigator Basic Section 43050:Genome biology-related
Keywords	Principal Investigator 遺伝子発現制御 / ゲノム進化 / MPRA / エンハンサー / ヒト進化 / 神経前駆細胞 / iPS細胞 / エピゲノム / 転移因子 Except Principal Investigator レポーターアッセイ … More / iPS細胞 / CRISPR-Cas9 / ヒトiPS細胞 / DNAリピート / ゲノム解析 / ゲノム編集 Less

ヒト特性に関わるノンコーディング変異の網羅的同定Principal Investigator
- Principal Investigator
  
  井上詞貴
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  Kyoto University
Elucidation of the mechanism of transposable element evolution using massively parallel reporter assayPrincipal Investigator
- Principal Investigator
  
  Inoue Fumitaka
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  Kyoto University
Evaluating the role of cis-regulatory tandem DNA repeats in human disease and evolution
- Principal Investigator
  
  Woltjen Knut
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  Kyoto University

All 2024 2023 2022

All Journal Article Presentation

[Journal Article] Characterization of enhancer activity in early human neurodevelopment using Massively Parallel Reporter Assay (MPRA) and forebrain organoids2024
- Author(s)
  Capauto Davide、Wang Yifan、Wu Feinan、Norton Scott、Mariani Jessica、Inoue Fumitaka、Crawford Gregory E.、Ahituv Nadav、Abyzov Alexej、Vaccarino Flora M.
- Journal Title
  
  Scientific Reports
  
  Volume: 14 Issue: 1
- DOI
  10.1038/s41598-024-54302-7
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06119
[Journal Article] Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework2024
- Author(s)
  Liu Jiayi、Ashuach Tal、Inoue Fumitaka、Ahituv Nadav、Yosef Nir、Kreimer Anat
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 52 Issue: 4 Pages: 1613-1627
- DOI
  10.1093/nar/gkae012
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06119
[Journal Article] Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans2024
- Author(s)
  Feng Yuanqing、Xie Ning、Inoue Fumitaka、Fan Shaohua、Saskin Joshua、Zhang Chao、Zhang Fang、Hansen Matthew E. B.、Nyambo Thomas、Mpoloka Sununguko Wata、Mokone Gaonyadiwe George、Fokunang Charles、Belay Gurja、Njamnshi Alfred K.、Marks Michael S.、Oancea Elena、Ahituv Nadav、Tishkoff Sarah A.
- Journal Title
  
  Nature Genetics
  
  Volume: 56 Issue: 2 Pages: 258-272
- DOI
  10.1038/s41588-023-01626-1
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06119
[Journal Article] Characterization of De Novo Promoter Variants in Autism Spectrum Disorder with Massively Parallel Reporter Assays2023
- Author(s)
  Koesterich Justin、An Joon-Yong、Inoue Fumitaka、Sohota Ajuni、Ahituv Nadav、Sanders Stephan J.、Kreimer Anat
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 24 Issue: 4 Pages: 3509-3509
- DOI
  10.3390/ijms24043509
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06119
[Journal Article] Three-dimensional genome rewiring in loci with human accelerated regions2023
- Author(s)
  Keough Kathleen C.、Whalen Sean、Inoue Fumitaka、et al.
- Journal Title
  
  Science
  
  Volume: 380 Issue: 6643
- DOI
  10.1126/science.abm1696
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06119
[Journal Article] Transcription factor binding site orientation and order are major drivers of gene regulatory activity2023
- Author(s)
  Ilias Georgakopoulos-Soares, Chengyu Deng, Vikram Agarwal, Candace S. Y. Chan, Jingjing Zhao, Fumitaka Inoue & Nadav Ahituv
- Journal Title
  
  Nature Communications
  
  Volume: 14 Issue: 1 Pages: 2333-2333
- DOI
  10.1038/s41467-023-37960-5
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06119
[Journal Article] Cryptic endogenous retrovirus subfamilies in the primate lineage2023
- Author(s)
  Chen Xun、Zhang Zicong、Yan Yizhi、Goubert Clement、Bourque Guillaume、Inoue Fumitaka
- Journal Title
  
  Biorxiv
  
  Volume: NA Pages: 0-0
- DOI
  10.1101/2023.12.07.570592
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06119, KAKENHI-PROJECT-21K15066
[Journal Article] Machine learning dissection of human accelerated regions in primate neurodevelopment2023
- Author(s)
  Whalen Sean, Inoue Fumitaka, Ryu Hane, et. al.
- Journal Title
  
  Neuron
  
  Volume: 111 Issue: 6 Pages: 857-873.e8
- DOI
  10.1016/j.neuron.2022.12.026
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06119
[Journal Article] Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation2022
- Author(s)
  Kreimer Anat、Ashuach Tal、Inoue Fumitaka、Khodaverdian Alex、Deng Chengyu、Yosef Nir、Ahituv Nadav
- Journal Title
  
  Nature Communications
  
  Volume: 13 Issue: 1 Pages: 1504-1504
- DOI
  10.1038/s41467-022-28659-0
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06119
[Journal Article] High-throughput characterization of the role of non-B DNA motifs on promoter function2022
- Author(s)
  Georgakopoulos-Soares Ilias、Victorino Jesus、Parada Guillermo E.、Agarwal Vikram、Zhao Jingjing、Wong Hei Yuen、Umar Mubarak Ishaq、Elor Orry、Muhwezi Allan、An Joon-Yong、Sanders Stephan J.、Kwok Chun Kit、Inoue Fumitaka、Hemberg Martin、Ahituv Nadav
- Journal Title
  
  Cell Genomics
  
  Volume: 2 Issue: 4 Pages: 100111-100111
- DOI
  10.1016/j.xgen.2022.100111
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06119
[Presentation] Massively parallel dissection of regulatory code underlying neural differentiation2023
- Author(s)
  Fumitaka Inoue
- Organizer
  The 56th Annual Meeting of the Japanese Society of Developmental Biologists
- Invited
- Data Source
  KAKENHI-PROJECT-21K06119
[Presentation] 大規模並列レポーターアッセイ(MPRA)による転移因子エンハンサーの機能解析2023
- Author(s)
  井上詞貴
- Organizer
  第6回転移因子研究会
- Invited
- Data Source
  KAKENHI-PROJECT-21K06119
[Presentation] Decoding human regulome using Massively Parallel Reporter Assays2022
- Author(s)
  井上詞貴
- Organizer
  iCeMS-ASHBi exchange gathering
- Invited
- Data Source
  KAKENHI-PROJECT-21K06119
[Presentation] 大規模並列レポーターアッセイによるノンコーディングゲノム解読2022
- Author(s)
  井上詞貴
- Organizer
  NGS EXPO
- Invited
- Data Source
  KAKENHI-PROJECT-21K06119
[Presentation] 転移因子エンハンサーバリアントの大規模機能解析2022
- Author(s)
  井上詞貴
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-21K06119

1. BOURQUE GUILLAUME (80890566)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
2. Woltjen Knut (50589489)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 川路英哉 (20525406)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 依馬正次 (60359578)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. 大貫茉里 (40983606)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

INOUE FUMITAKA 井上 詞貴

Inoue Fumitaka 井上 詞貴

Research Projects

Research Products

Co-Researchers

ヒト特性に関わるノンコーディング変異の網羅的同定Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Elucidation of the mechanism of transposable element evolution using massively parallel reporter assayPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Evaluating the role of cis-regulatory tandem DNA repeats in human disease and evolution

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Characterization of enhancer activity in early human neurodevelopment using Massively Parallel Reporter Assay (MPRA) and forebrain organoids2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Characterization of De Novo Promoter Variants in Autism Spectrum Disorder with Massively Parallel Reporter Assays2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Three-dimensional genome rewiring in loci with human accelerated regions2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Transcription factor binding site orientation and order are major drivers of gene regulatory activity2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Cryptic endogenous retrovirus subfamilies in the primate lineage2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Machine learning dissection of human accelerated regions in primate neurodevelopment2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] High-throughput characterization of the role of non-B DNA motifs on promoter function2022

Author(s)

Journal Title

DOI

Data Source

[Presentation] Massively parallel dissection of regulatory code underlying neural differentiation2023

Author(s)

Organizer

Data Source

[Presentation] 大規模並列レポーターアッセイ(MPRA)による転移因子エンハンサーの機能解析2023

Author(s)

Organizer

INOUE FUMITAKA 井上詞貴

Inoue Fumitaka 井上詞貴