• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Yamanaka Masaru  山中 優

ORCIDConnect your ORCID iD *help
… Alternative Names

YAMANAKA Masaru  山中 優

Less
Researcher Number 60632825
Other IDs
Affiliation (Current) 2025: 奈良先端科学技術大学院大学, 研究推進機構, URA
Affiliation (based on the past Project Information) *help 2021 – 2023: 奈良先端科学技術大学院大学, 研究推進機構, URA
2018 – 2021: 奈良先端科学技術大学院大学, 先端科学技術研究科, 助教
2016: 奈良先端科学技術大学院大学, 物質創成科学研究科, 助教
Review Section/Research Field
Principal Investigator
Basic Section 28040:Nanobioscience-related
Except Principal Investigator
Bio-related chemistry
Keywords
Principal Investigator
タンパク質超分子 / 構成分子間連携 / 構造領域シャッフリング / 人工タンパク質設計 / バイオナノマシン / 構造領域交換 / タンパク質デザイン / ビルディングブロック / 駆動型超分子 / 四次構造変化 … More / 四次構造変 / ドメインスワッピング / タンパク質設計 / ナノマシン / センサータンパク質 … More
Except Principal Investigator
超分子 / 蛋白質 / ドメインスワッピング / 立体構造 / 多量体 / 超分子化学 / ナノバイオ / 生体分子 / タンパク質 Less
  • Research Projects

    (3 results)
  • Research Products

    (45 results)
  • Co-Researchers

    (6 People)
  •  Construction of bionanomachines in which protein movements cooperate to express functionsPrincipal Investigator

    • Principal Investigator
      Yamanaka Masaru
    • Project Period (FY)
      2021 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 28040:Nanobioscience-related
    • Research Institution
      Nara Institute of Science and Technology
  •  Construction of an artificial protein supramolecular machine with a sensor protein as a driving corePrincipal Investigator

    • Principal Investigator
      Yamanaka Masaru
    • Project Period (FY)
      2018 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 28040:Nanobioscience-related
    • Research Institution
      Nara Institute of Science and Technology
  •  Development of supramolecular construction techniques of proteins and their functionalization using domain swapping

    • Principal Investigator
      HIROTA Shun
    • Project Period (FY)
      2014 – 2016
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bio-related chemistry
    • Research Institution
      Nara Institute of Science and Technology

All 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014

All Journal Article Presentation

  • [Journal Article] Conferment of CO-Controlled Dimer-Monomer Transition Property to Thermostable Cytochrome c′ by Mutation in the Subunit-Subunit Interface2019

    • Author(s)
      Yamanaka Masaru、Nakayama Ryoko、Fujii Sotaro、Wakai Satoshi、Sambongi Yoshihiro、Hirota Shun
    • Journal Title

      Bulletin of the Chemical Society of Japan

      Volume: 92 Issue: 3 Pages: 702-709

    • DOI

      10.1246/bcsj.20180311

    • NAID

      130007614161

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K04906, KAKENHI-PROJECT-16K07692, KAKENHI-PROJECT-18H02088
  • [Journal Article] Formation and Carbon Monoxide-Dependent Dissociation of Allochromatium vinosum Cytochrome c' Oligomers Using Domain-Swapped Dimers2017

    • Author(s)
      M. Yamanaka, M. Hoshizumi, S. Nagao, R. Nakayama, N. Shibata, Y. Higuchi, and S. Hirota
    • Journal Title

      Protein Science

      Volume: 26 Issue: 3 Pages: 464-474

    • DOI

      10.1002/pro.3090

    • NAID

      120006334944

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PUBLICLY-16H00839, KAKENHI-PROJECT-26288080, KAKENHI-PROJECT-15K13744
  • [Journal Article] Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells2016

    • Author(s)
      Yugo Hayashi, Masaru Yamanaka, Satoshi Nagao, Hirofumi Komori, Yoshiki Higuchi, Shun Hirota
    • Journal Title

      Scientific reports

      Volume: 6 Issue: 1 Pages: 19334-19334

    • DOI

      10.1038/srep19334

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-14J10305, KAKENHI-PROJECT-25291038, KAKENHI-PROJECT-26288080
  • [Journal Article] Oligomerization Enhancement and Two Domain Swapping Mode Detection for Thermostable Cytochrome c-552 via the Elongation of the Major Hinge Loop2015

    • Author(s)
      C. Ren, S. Nagao, M. Yamanaka, H. Komori, Y. Shomura, Y. Higuchi and S. Hirota
    • Journal Title

      Mol. Biosyst.

      Volume: 11(12) Issue: 12 Pages: 218-221

    • DOI

      10.1039/c5mb00545k

    • NAID

      120006334941

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-25291038, KAKENHI-PROJECT-26288080
  • [Journal Article] DNA Cleavage by Oxymyoglobin and Cysteine-Introduced Metmyoglobin2014

    • Author(s)
      M. S. Deshpande, S. Junedi, H. Prakash, S. Nagao, M. Yamanaka, S. Hirota
    • Journal Title

      Chemical Communications

      Volume: 50 Issue: 95 Pages: 15034-15036

    • DOI

      10.1039/c4cc06617k

    • NAID

      120005716862

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Journal Article] Formation of Domain-Swapped Oligomer of Cytochrome c from Its Molten Globule State Oligomer2014

    • Author(s)
      Megha Deshpande, Partha Parui, Hironari Kamikubo, Masaru Yamanaka, Satoshi Nagao, Hirofumi Komori, Mikio Kataoka, Yoshiki Higuchi, Shun Hirota
    • Journal Title

      Biochemistry

      Volume: 53(28) Issue: 28 Pages: 4696-4703

    • DOI

      10.1021/bi500497s

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24247030, KAKENHI-PLANNED-25102003, KAKENHI-PROJECT-25291038, KAKENHI-PROJECT-26288080
  • [Journal Article] Change in Structure and Ligand Binding Properties of Hyperstable Cytochrome c555 from Aquifex aeolicus by Domain Swapping2014

    • Author(s)
      M. Yamanaka, S. Nagao, H. Komori, Y. Higuchi and S. Hirota
    • Journal Title

      Protein Science

      Volume: 24 Issue: 3 Pages: 366-375

    • DOI

      10.1002/pro.2627

    • NAID

      120005716876

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-25291038, KAKENHI-PROJECT-26288080
  • [Presentation] シトクロム c 2量体の形成と安定性に対するイオンの影響2024

    • Author(s)
      藤原綱大、龍﨑美智子、山中優、真島剛史、小林直也、廣田俊、
    • Organizer
      日本化学会第104春季年会
    • Data Source
      KAKENHI-PROJECT-21K04850
  • [Presentation] 円順列変異とαへリックス挿入を用いた3ユニット環状ヘムタンパク質の構築と構造解析2023

    • Author(s)
      藤原綱大、真島剛史、小林直也、山中優、米澤健人、上久保裕生、内橋貴之、廣田俊
    • Organizer
      第23回日本蛋白質科学会科学会年会
    • Data Source
      KAKENHI-PROJECT-21K04850
  • [Presentation] αヘリックスで連結した3ユニット環状ヘムタンパク質の構築と構造解析2022

    • Author(s)
      藤原綱大、大西遥喜、真島剛史、小林直也、山中優、米澤健人、上久保裕生、内橋貴之、廣田俊
    • Organizer
      第48回生体分子科学討論会
    • Data Source
      KAKENHI-PROJECT-21K04850
  • [Presentation] Conversion of a Monomeric Protein into a Domain-swapped Dimer by Utilizing a Tight Hydrogen Bond Network at the Hinge Region for Myoglobin2022

    • Author(s)
      Cheng Xie, Hiromitsu Shimoyama, Masaru Yamanaka, Satoshi Nagao, Hirofumi Komori, Naoki Shibata, Yoshiki Higuchi, Yasuteru Shigeta, Shun Hirota
    • Organizer
      10th Asian Biological Inorganic Chemistry
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-21K04850
  • [Presentation] 循環置換とαへリックス挿入を用いた3ユニット環状ヘムタンパク質の構築と構造解析2022

    • Author(s)
      藤原綱大、大西遥喜、真島剛史、小林直也、山中優、米澤健人、上久保裕生、内橋貴之、廣田俊
    • Organizer
      第16回バイオ関連化学シンポジウム
    • Data Source
      KAKENHI-PROJECT-21K04850
  • [Presentation] αヘリックスで連結した3ユニット環状ヘムタンパク質の溶液構造の評価2021

    • Author(s)
      藤原綱大、大西遥喜、真島剛史、小林直也、山中優、米澤健人、上久保裕生、内橋貴之、廣田俊
    • Organizer
      日本化学会第102春季年会
    • Data Source
      KAKENHI-PROJECT-21K04850
  • [Presentation] 循環置換とαへリックス挿入を用いた3ユニット環状ヘムタンパク質の設計と構築2021

    • Author(s)
      藤原綱大、山中優、真島剛史、小林直也、大西遥喜、内橋貴之、廣田俊、
    • Organizer
      第15回バイオ関連化学シンポジウム
    • Data Source
      KAKENHI-PROJECT-21K04850
  • [Presentation] センサータンパク質を駆動系として組み込んだビルディングブロックタンパク質の二量体の性質と挙動2021

    • Author(s)
      山中優、内橋貴之、廣田俊
    • Organizer
      日本化学会第101春季大会
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] αヘリックスで連結した3ユニット環状ヘムタンパク質の設計と構築2021

    • Author(s)
      大西遥喜、藤原綱大、真島剛史、小林直也、山中優、緒方英明、廣田俊、
    • Organizer
      日本化学会第102春季年会
    • Data Source
      KAKENHI-PROJECT-21K04850
  • [Presentation] センサータンパク質を駆動系として組み込んだビルディングブロックタンパク質の超分子化2021

    • Author(s)
      吉田充希、山中優、廣田俊
    • Organizer
      日本化学会第101春季大会
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] Construction of Structure-Switchable Protein Supramolecules using Fusion Proteins Designed Based on 3D Domain Swapping2020

    • Author(s)
      Masaru Yamanaka, Takayuki Uchihashi, Shun Hirota
    • Organizer
      第20回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] ドメインスワップ構造を基に設計した融合タンパク質による可動型超分子の構築2020

    • Author(s)
      山中優、廣田俊
    • Organizer
      日本化学会第100春季大会
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] The Design of Artificial Domain-Swapped Dimers by Polyproline Rod Insertion2020

    • Author(s)
      Shota Shiga, Masaru Yamanaka, Wataru Fujiwara, Shun Hirota, Shuichiro Goda, Koki Makabe
    • Organizer
      第20回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] Construction of Protein Supramolecules Based on Domain Swapping2019

    • Author(s)
      Masaru Yamanaka, Satoshi Nagao, Chunguang Ren, Mohan Zhang, Akiya Oda, Yoshiki Higuchi, Shun Hirota
    • Organizer
      第19回蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] 耐熱性シトクロムcのサブユニット界面変異によるCO応答性2量体-単量体変換特性の付与2019

    • Author(s)
      山中優、中山諒子、若井暁、藤井創太郎、三本木至宏、廣田俊
    • Organizer
      日本化学会第99春季大会
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] Conferment of CO-Controlled Dimer-Monomer Transition Property to Thermostable Cytochrome c′ by Mutation in the Subunit Interface2019

    • Author(s)
      Masaru Yamanaka, Ryoko Nakayama, Sotaro Fujii, Satoshi Wakai, Yoshihiro Sambongi, Shun Hirota
    • Organizer
      15th International Symposium on Applied Bioinorganic Chemistry (ISABC15)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] Formation of Cytochrome c' tetramer Using Domain-Swapping and Carbon Monoxide-Dependent Control of Oligomer Association/Dissociation2019

    • Author(s)
      Masaru Yamanaka, Satoshi Nagao, Shun Hirota
    • Organizer
      15th International Symposium on Applied Bioinorganic Chemistry
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] Construction of Protein Supramolecules Based on Domain-Swapping Mechanism2019

    • Author(s)
      Masaru Yamanaka, Satoshi Nagao, Chunguang Ren, Mohan Zhang, Akiya Oda, Yoshiki Higuchi, Shun Hirota
    • Organizer
      33rd Annual Symposium of the Protein Society
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] ドメインスワップ機構を利用した駆動型人工タンパク質超分子の構築2019

    • Author(s)
      山中優
    • Organizer
      農芸化学会関西支部ミニシンポジウム
    • Invited
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] サブユニット界面変異による耐熱性シトクロムc′へのCO依存的2量体-単量体遷移特性の付与2018

    • Author(s)
      山中優、中山諒子、藤井創太郎、岩井暁、三本木至宏、廣田俊
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Data Source
      KAKENHI-PROJECT-18K04906
  • [Presentation] Construction of a Triangle-shaped Structure with a Unit Protein Based on Cytochrome c5552017

    • Author(s)
      Akiya Oda, Ikki Ueda, Masaru Yamanaka, Satoshi Nagao, Naoki Shibata, Yoshiki Higuchi, and Shun Hirota
    • Organizer
      97th Chemical Society of Japan Annual Meeting
    • Place of Presentation
      慶応義塾大学(神奈川県横浜市)
    • Year and Date
      2017-03-16
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] Formation of Cytochrome c Oligomers Using Domain-Swapped Dimers and Carbon Monoxide-Dependent Control of Oligomer Association/Dissociation2017

    • Author(s)
      Masaru Yamanaka, Ryoko Nakayama, Satoshi Nagao, Makoto Hoshizumi, Naoki Shibata, Yoshiki Higuchi, and Shun Hirota
    • Organizer
      97th Chemical Society of Japan Annual Meeting
    • Place of Presentation
      慶応義塾大学(神奈川県横浜市)
    • Year and Date
      2017-03-16
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] Cytochrome c: Domain Swapping, Self-Modification, and Molecular Recognition2017

    • Author(s)
      Shun Hirota, Satoshi Nagao, Masaru Yamanaka, and Yoshiki Higuchi
    • Organizer
      5th Symposium on Advanced Biological Inorganic Chemistry
    • Place of Presentation
      Kolkata, India
    • Year and Date
      2017-01-07
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] Effect of Rare Codons on Hydrogenobacter thermophiles cyt c552 Oligomerization in E. coli Cells2017

    • Author(s)
      Hongxu Yang, Masaru Yamanaka, Satoshi Nagao, and Shun Hirota
    • Organizer
      97th Chemical Society of Japan Annual Meeting
    • Place of Presentation
      慶応義塾大学(神奈川県横浜市)
    • Year and Date
      2017-03-16
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] 二次元蛍光寿命相関分光法によるウマシトクロムcのフォールディング機構の研究2016

    • Author(s)
      坂口美幸、山中優、廣田俊、石井邦彦、田原太平
    • Organizer
      第10回分子科学討論会
    • Place of Presentation
      神戸ファッションマート(兵庫県神戸市)
    • Year and Date
      2016-09-13
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] Construction of Heme Protein Supramolecules by Domain Swapping2016

    • Author(s)
      Shun Hirota, Satoshi Nagao, Masaru Yamanaka, and Yoshiki Higuchi
    • Organizer
      5th Symposium on Advanced Biological Inorganic Chemistry
    • Place of Presentation
      Auckland, New Zealand
    • Year and Date
      2016-12-04
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] 過酸との反応によるシトクロムcのMet80の酸化修飾2016

    • Author(s)
      松本順文、REN Chunguang、山中優、長尾聡、廣田俊
    • Organizer
      第10回バイオ関連化学シンポジウム
    • Place of Presentation
      石川県立音楽堂・もてなしドーム地下イベント広場(石川県金沢市)
    • Year and Date
      2016-09-07
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] Analysis of Environment Dependent Dynamics of Cytochrome c on a Lipid Membrane by 2D Fluorescence Lifetime Correlation Spectroscopy2016

    • Author(s)
      Miyuki Sakaguchi,Masaru Yamanaka,Shun Hirota,Kunihiko Ishii,and Tahei Tahara
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] Construction of Cytochrome c' Tetramer and Its Size Control by CO Binding2016

    • Author(s)
      山中優、星住誠人、廣田俊
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      同志社大学(京都府京田辺市)
    • Year and Date
      2016-03-24
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] 四量体シトクロムc’の作製とCO分子結合・解離によるサイズ制御2016

    • Author(s)
      山中優、星住誠人、長尾聡、廣田俊
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Year and Date
      2016-06-07
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] Formation of domain-swapped oligomer of Hydrogenobacter thermophiles cytochrome c552 in an expression system2015

    • Author(s)
      Yugo Hayashi, Satoshi Nagao, Masaru Yamanaka, Hirofumi Komori, Yoshiki Higuchi, Shun Hirota
    • Organizer
      95th Spring Conference of the Chemical Society of Japan
    • Place of Presentation
      Nihon University (Funabashi)
    • Year and Date
      2015-03-26
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] ドメインスワッピングを利用したシトクロムcおよびミオグロビンの多量体形成2015

    • Author(s)
      長尾聡、山中優、Ying-Wu Lin、Megha Subhash Deshpande、小森博文、庄村康人、樋口芳樹、廣田俊
    • Organizer
      第25回金属の関与する生体関連反応シンポジウム
    • Place of Presentation
      長崎大学(長崎県長崎市)
    • Year and Date
      2015-05-30
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] Domain Swapping of c-Type Cytochromes and Myoglobin2015

    • Author(s)
      Shun Hirota, Satoshi Nagao, Masaru Yamanaka, Hirofumi Komori, Yasuhito Shomura, Yoshiki Higuchi
    • Organizer
      "Metals in Biology" in Wako
    • Place of Presentation
      Riken Wako Campus (Wako, Saitama)
    • Year and Date
      2015-06-16
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] Change in Structure and Ligand Binding Properties of Cytochrome c555 from Hyperthermophile by Domain Swapping2015

    • Author(s)
      山中優、長尾聡、小森博文、樋口芳樹、廣田俊
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール(徳島県徳島市)
    • Year and Date
      2015-06-24
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] 緑膿菌由来シトクロムc551と好熱性水素細菌由来シトクロムc552のキメラタンパク質を用いたヘテロダイマーの構築2015

    • Author(s)
      中西司、山中優、廣田俊
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学(船橋)
    • Year and Date
      2015-03-26
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] Construction of high-order domain-swapped oligomers of Hydrogenobacter thermophilus cytochrome c552 by hinge loop mutation2015

    • Author(s)
      Chunguang Ren, Masaru Yamanaka, Satoshi Nagao, Shun Hirota
    • Organizer
      95th Spring Conference of the Chemical Society of Japan
    • Place of Presentation
      Nihon University (Funabashi)
    • Year and Date
      2015-03-29
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] 好熱菌シトクロムc552のドメインスワップ多量体形成2015

    • Author(s)
      林有吾、山中優、長尾聡、小森博文、樋口芳樹、廣田俊
    • Organizer
      日本生物高分子学会2015年度大会
    • Place of Presentation
      香川大学(香川県高松市)
    • Year and Date
      2015-09-19
    • Data Source
      KAKENHI-PROJECT-26288080
  • [Presentation] 生理的条件下でのシトクロムc多量体形成2014

    • Author(s)
      林有吾、中山璃子、長尾聡、山中優、小森博文、樋口芳樹、廣田俊
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学(岡山市)
    • Year and Date
      2014-09-12
    • Data Source
      KAKENHI-PROJECT-26288080
  • 1.  HIROTA Shun (90283457)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 28 results
  • 2.  HIGUCHI Yoshiki (90183574)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 12 results
  • 3.  NAGAO Satoshi (30452535)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 15 results
  • 4.  松尾 貴史 (50432521)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 5.  上久保 裕生
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 6.  片岡 幹雄
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

URL: 

Are you sure that you want to link your ORCID iD to your KAKEN Researcher profile?
* This action can be performed only by the researcher himself/herself who is listed on the KAKEN Researcher’s page. Are you sure that this KAKEN Researcher’s page is your page?

この研究者とORCID iDの連携を行いますか?
※ この処理は、研究者本人だけが実行できます。

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi