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OKAMOTO Yuko  岡本 祐幸

ORCIDConnect your ORCID iD *help
… Alternative Names

岡本 祐幸  オカモト ユウコウ

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Researcher Number 70185487
Other IDs
External Links
Affiliation (Current) 2022: 名古屋大学, 情報連携推進本部, 招へい教員
Affiliation (based on the past Project Information) *help 2016 – 2018: 名古屋大学, 理学研究科, 教授
2017: 名古屋大学, 理学研究科, 特任准教授
2012 – 2015: 名古屋大学, 理学(系)研究科(研究院), 教授
2014: 名古屋大学, 大学院理学研究科, 教授
2012 – 2013: 名古屋大学, 理学研究科, 教授 … More
2007 – 2012: Nagoya University, 大学院・理学研究科, 教授
2006: 名古屋大学, 大学院理学研究科, 教授
2005: 名古屋大学, 大学院・理学研究科, 教授
2004: 分子科学研究所, 理論分子科学研究系, 助教授
2003: 岡崎国立共同研究機構, 分子科学研究所, 助教授
1995 – 1998: 岡崎国立共同研究機構, 分子科学研究所, 助教授
1993: 奈良女子大学, 理学部・物理学科, 助教授 Less
Review Section/Research Field
Principal Investigator
Science and Engineering / Biophysics / 物理学一般 / Biological physics/Chemical physics/Soft matter physics
Except Principal Investigator
Science and Engineering
Keywords
Principal Investigator
拡張アンサンブル法 / マルチカノニカル法 / 立体構造予測 / モンテカルロ法 / 分子動力学法 / 分子シミュレーション / 蛋白質 / タンパク質 / 徐冷モンテカルロ法 / 最適化 … More / 徐冷法 / 核酸 / 生体系 / 自由エネルギー計算 / 最適化問題 / タンパク質の立体構造 / レプリカ交換法 / alpha-ヘリックス / ペプチド / タンパク質の折れたたみ / 最適化アルゴリズム / タンパク質の主体構造 / タンパク質の折り畳み / 計算機シミュレーション / マルチバーリック法 / 膜タンパク質 / 折り畳み / 蛋白質折り畳み / シミュレーション / エネルギー関数 / 自由エネルギー / 拡張アンサンブル / 分子シュミレーション / 生体分子系 / 人工分子系 / 計算物理学 / 分子動力学シミュレーション / 密度汎関数法 / 量子効果 / ドッキング / レプリカ交換傘サンプル法 / レプリカ交換溶質焼き戻し法 / 創薬 / Protein Tertiary Structures / Optimization / Monte Carlo / Molecular Dynamics / Simulated Annealing / Multicanonical Algorithm / Generalized Ensemble / Nucleic Acids / 立体構造決定 / X線実験 / NMR実験 / マルナカノニカル法 / proteiu / nudeic acid / structure determination / X-ray experiment / NMR experiment / murticanonieal algorithm / generalized-eusemble algorithm … More
Except Principal Investigator
分子科学 / 動的秩序 / 生命分子 / 超分子 / 集合離散 / 高次機能 / 離合集散 / 揺らぎ / ダイナミクス / 生体分子 / 機能 / 反応 / 計算物理 / 蛋白質 / 電子状態計算 / 分子シミュレーション / 生物物理 Less
  • Research Projects

    (16 results)
  • Research Products

    (421 results)
  • Co-Researchers

    (30 People)
  •  International Activity Support for Dynamical ordering of biomolecular systems for creation of integrated functions

    • Principal Investigator
      Kato Koichi
    • Project Period (FY)
      2015 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Center for Novel Science Initatives, National Institutes of Natural Sciences
      Okazaki Research Facilities, National Institutes of Natural Sciences
  •  Management for Dynamical ordering of biomolecular systems for creation of integrated functions

    • Principal Investigator
      Kato Koichi
    • Project Period (FY)
      2013 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Okazaki Research Facilities, National Institutes of Natural Sciences
  •  Interactions among biological molecular assembly and among artificial molecular assembly and large-scale structural transformationsPrincipal Investigator

    • Principal Investigator
      OKAMOTO Yuko
    • Project Period (FY)
      2013 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
  •  拡張アンサンブル密度汎関数分子動力学法によるATP加水分解の研究Principal Investigator

    • Principal Investigator
      岡本 祐幸
    • Project Period (FY)
      2013
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
  •  Study on the mechanism of docking of small molecules to proteins by generalized-ensemble algorithmsPrincipal Investigator

    • Principal Investigator
      OKAMOTO Yuko
    • Project Period (FY)
      2013 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Biological physics/Chemical physics/Soft matter physics
    • Research Institution
      Nagoya University
  •  Exploration of reactions and structural space in multi-degree-of-freedom and large-scale systems

    • Principal Investigator
      YAMATO Takahisa
    • Project Period (FY)
      2010 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
  •  蛋白質系分子シミュレーションのための新規エネルギー関数の開発Principal Investigator

    • Principal Investigator
      岡本 祐幸
    • Project Period (FY)
      2008
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
  •  Management for Molecular Science of Fluctuations toward Biological Functions

    • Principal Investigator
      TERAZIMA Masahide
    • Project Period (FY)
      2008 – 2013
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Kyoto University
  •  Development of molecular simulation algorithms for enhancing structural fluctuations and for accurate free -energy calculationsPrincipal Investigator

    • Principal Investigator
      OKAMOTO Yuko
    • Project Period (FY)
      2008 – 2012
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
  •  拡張アンサンブル法による蛋白質折り畳み機構の研究Principal Investigator

    • Principal Investigator
      岡本 祐幸
    • Project Period (FY)
      2003 – 2007
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Nagoya University
      Institute for Molecular Science
      Okazaki National Research Institutes
  •  拡張アンサンブル法による蛋白質の立体構造予測Principal Investigator

    • Principal Investigator
      岡本 祐幸
    • Project Period (FY)
      1997 – 1998
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Okazaki National Research Institutes
  •  Tertiavy structure analysis of biomolecules based on X-ray and NMR data by multicawowical algorithmPrincipal Investigator

    • Principal Investigator
      OKAMOTO Yuko
    • Project Period (FY)
      1997 – 1998
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Biophysics
    • Research Institution
      OKAZAKI NATIONAL RESEARCH INSTITVTES
  •  新最適化アルゴリズムによるタンパク質の折れたたみの研究Principal Investigator

    • Principal Investigator
      岡本 祐幸
    • Project Period (FY)
      1996
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Okazaki National Research Institutes
  •  新最適化アルゴリズムによるタンパク質の折れたたみ機構の研究Principal Investigator

    • Principal Investigator
      岡本 祐幸
    • Project Period (FY)
      1995
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Okazaki National Research Institutes
  •  Prediction of Protein Tertiary Structures by Monte Carlo Simulated Annealing and Multicanonical AlgorithmsPrincipal Investigator

    • Principal Investigator
      OKAMOTO Yuko
    • Project Period (FY)
      1995 – 1996
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Biophysics
    • Research Institution
      OKAZAKI NATIONAL RESEARCH INSTITUTES
  •  徐冷モンテカルロ法によるタンパク質の立体構造予測Principal Investigator

    • Principal Investigator
      岡本 祐幸
    • Project Period (FY)
      1993
    • Research Category
      Grant-in-Aid for Encouragement of Young Scientists (A)
    • Research Field
      物理学一般
    • Research Institution
      Nara Women's University

All 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004 Other

All Journal Article Presentation Book

  • [Book] Molecular Science of Fluctuations Toward Biological Functions2016

    • Author(s)
      M. Terazima, M. Kataoka, R. Ueoka, and Y. Okamoto (eds.)
    • Total Pages
      270
    • Publisher
      Springer
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Book] Molecular Science of Fluctuations Toward Biological Functions2016

    • Author(s)
      M. Terazima, M. Kataoka, R. Ueoka, and Y. Okamoto (eds.)
    • Total Pages
      270
    • Publisher
      Springer
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Book] “Conformational dynamics of oligosaccharides characterized by paramagnetism-assisted NMR spectroscopy in conjunction with molecular dynamics simulation” in Advances in Experimental Medicine and Biology 842: Biochemical Roles of Eukaryotic Cell Surface Macromolecules2015

    • Author(s)
      Y. Zhang, T. Yamaguchi, T. Satoh, M. Yagi-Utsumi, Y. Kamiya, Y. Sakae, Y. Okamoto, and K. Kato (edited by A. Chakrabarti and A. Surolia)
    • Publisher
      Springer
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Book] “Conformational dynamics of oligosaccharides characterized by paramagnetism-assisted NMR spectroscopy in conjunction with molecular dynamics simulation” in Advances in Experimental Medicine and Biology 842: Biochemical Roles of Eukaryotic Cell Surface Macromolecules2015

    • Author(s)
      Y. Zhang, T. Yamaguchi, T. Satoh, M. Yagi-Utsumi, Y. Kamiya, Y. Sakae, Y. Okamoto, and K. Kato (edited by A. Chakrabarti and A. Surolia)
    • Publisher
      Springer
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Book] Advances in Experimental Medicine and Biology2015

    • Author(s)
      Y.Zhang, T.Yamaguchi, T.Satoh, M.Yagi-Utsumi, Y.Kamiya, Y.Sakae, Y.Okamoto, and K.Kato
    • Total Pages
      411
    • Publisher
      Springer (Switzerland)
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Book] "Optimizations of protein force fields" in Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes-; from Bioinformatics to Molecular Quantum Mechanics2014

    • Author(s)
      Y. Sakae and Y. Okamoto, (A. Liwo ed.)
    • Total Pages
      810
    • Publisher
      Springer-Verlag
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Book] Advances in Experimental Medicine and Biology 805: Protein Conformational Dynamics2014

    • Author(s)
      T. Yoda, Y. Sugita, and Y. Okamoto (edited by K.-L. Han, Xin Zhang, and M.-J. Yang)
    • Total Pages
      410
    • Publisher
      Springer
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Book] Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes – from Bioinformatics to Molecular Quantum Mechanics2014

    • Author(s)
      Yoshitake Sakae and Yuko Okamoto (edited by A. Liwo)
    • Publisher
      Springer-Verlag
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Book] “Protein folding simulations by generalized-ensemble algorithms” in Advances in Experimental Medicine and Biology 805: Protein Conformational Dynamics2014

    • Author(s)
      T. Yoda, Y. Sugita, and Y. Okamoto (edited by K.-L. Han, Xin Zhang, and M.-J. Yang)
    • Publisher
      Springer
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Book] Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes – from Bioinformatics to Molecular Quantum Mechanics2014

    • Author(s)
      Y. Sakae and Y. Okamoto (edited by A. Liwo)
    • Publisher
      Springer-Verlag
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Book] “Protein folding simulations by generalized-ensemble algorithms” in Advances in Experimental Medicine and Biology 805: Protein Conformational Dynamics2014

    • Author(s)
      T. Yoda, Y. Sugita, and Y. Okamoto (edited by K.-L. Han, Xin Zhang, and M.-J. Yang)
    • Publisher
      Springer
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Book] 「計算科学講座」第9巻「超多自由度系の最適化」第2章 「拡張アンサンブル法」2013

    • Author(s)
      岡本祐幸 (古橋武、笹井理生編)
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Book] 計算科学講座第9巻「超多自由度系の最適化」第2章「拡張アンサンブル法」2013

    • Author(s)
      岡本祐幸(古橋武、笹井理生編集)
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PUBLICLY-25104715
  • [Book] DOJIN BIOSCIENCEシリーズ「生体分子の動きを探るー揺らぎと生体機能ー」第12章2013

    • Author(s)
      岡本祐幸(寺嶋正秀編)
    • Publisher
      化学同人
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Book] 計算科学講座 第9巻「超多自由度系の最適化」 第2章 拡張アンサンブル法2013

    • Author(s)
      岡本祐幸(古橋 武、笹井理生 編)
    • Total Pages
      248
    • Publisher
      共立出版
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Book] Proceedings of the 5th Japan-Russia International Workshop MSSMBS'12 "Molecular Simulations Studies in Material and Biological Sciences"2013

    • Author(s)
      T. Yoda, Y. Sugita, and Y. Okamoto (edited by K. Kholmurodov)
    • Publisher
      Nova Science
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Book] Proceedings of the 5th Japan-Russia International Workshop MSSMBS'12 "Molecular Simulations Studies in Material and Biological Sciences"2013

    • Author(s)
      T. Yoda, Y. Sugita, and Y. Okamoto (edited by K. Kholmurodov)
    • Publisher
      Nova Science
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Book] DOJIN BIOSCIENCEシリーズ 「生体分子の動きを探る ― 揺らぎと生体機能 ―」第12章2013

    • Author(s)
      岡本祐幸(寺嶋正秀編)
    • Publisher
      化学同人
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Book] "Ligand docking simulations by generalized-ensemble algorithms" in Advances in Protein Chemistry and Structural Biology, Vol. 922013

    • Author(s)
      H. Kokubo, T. Tanaka, and Y. Okamoto (T. Karabencheva-Christova ed.)
    • Total Pages
      357
    • Publisher
      Academic Press
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Book] 「拡張アンサンブル法」,「計算科学講座」第9巻「超多自由度系の最適化」第2章2013

    • Author(s)
      岡本祐幸
    • Publisher
      古橋武、笹井理生編、共立出版
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Book] "Salt effect on folding of villin headpiece subdomain HP36 studied by generalized-ensemble simulations" in Proceedings of the 5th Japan-Russia International Workshop MSSMBS'12 "Molecular Simulations Studies in Material and Biological Sciences"2013

    • Author(s)
      T. Yoda, Y. Sugita, and Y. Okamoto (K. Kholmurodov ed.)
    • Total Pages
      219
    • Publisher
      Nova Science
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Book] 「計算科学講座」第9巻「超多自由度系の最適化」第2章「拡張アンサンブル法 」2013

    • Author(s)
      岡本祐幸 (古橋武、笹井理生編)
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Book] 揺らぎ・ダイナミクスと生体機能2013

    • Author(s)
      寺嶋正秀、加藤晃一、芳坂貴弘、佐藤啓文、岡本祐幸(寺嶋正秀編)
    • Total Pages
      368
    • Publisher
      化学同人
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Book] Advances in Protein Chemistry and Structural Biology, Vol. 922013

    • Author(s)
      H. Kokubo, T. Tanaka, and Y. Okamoto (edited by T. Karabencheva-Christova)
    • Publisher
      Academic Press
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Book] Advances in Protein Chemistry and Structural Biology Vol.922013

    • Author(s)
      H.Kokubo,T.Tanaka, and Y.Okamoto (edited by T.Karabencheva-Christova)
    • Publisher
      Academic Press
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Book] Generalized-ensemble algorithms for simulations of complex molecular systems," in Practical Aspects of Computational Chemistry II: An Overview of the Last Two Decades and Current Trends, J. Leszczynski and M.K. Shukla (eds.)2012

    • Author(s)
      H. Okumura, S.G. Itoh, and Y. Okamoto
    • Publisher
      Generalized-ensemble algorithms for simulations of complex molecular systems," in Practical Aspects of Computational Chemistry II: An Overview of the Last Two Decades and Current Trends, J. Leszczynski and M.K. Shukla (eds.)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Book] "Enhanced sampling algorithms," in Biomolecular Simulations: Methods and Protocols, L. Monticelli and E. Salonen (eds.)2012

    • Author(s)
      A. Mitsutake, Y. Mori, and Y. Okamoto
    • Publisher
      Humana Press, New York
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Book] Biomolecular Simulations: Methods and Protocols2012

    • Author(s)
      A. Mitsutake, Y. Mori, and Y. Okamoto (edited by L. Monticelli and E. Salonen)
    • Publisher
      Humana Press
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Book] Practical Aspects of Computational Chemistry II: An Overview of the Last Two Decades and Current Trends2012

    • Author(s)
      H. Okumura, S.G. Itoh, and Y. Okamoto (edited by J. Leszczynski and M.K. Shukla)
    • Publisher
      Springer
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Book] “Enhanced sampling algorithms’”, Biomolecular Simulations: Methods and Protocols, edited by L.Monticelli and E.Salonen, pp. 153-195.2012

    • Author(s)
      A. Mitsutake, Y. Mori, and Y. Okamoto
    • Total Pages
      702
    • Publisher
      Humana Press, New York
    • Data Source
      KAKENHI-PLANNED-22104009
  • [Book] Proceedings of the 4th Japan-Russia International Workshop MSSMBS'10 "Molecular Simulations Studies in Material and Biological Sciences", K.Kholmurodov (ed.), (Nova Science, Hauppauge)2011

    • Author(s)
      Y Mori, A.Mitsutake, Y Okamoto
    • Publisher
      Generalized-ensemble simulations in protein science
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Book] Springer-Verlag, Berlin2009

    • Author(s)
      Y.Okamoto
    • Publisher
      Generalized-ensemble algorithms for studying protein folding in Water and Biomolecules(K.Kuwajima, Y.Goto, F.Hirata, M.Kataoka, and M.Terazima, (eds.))
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Book] "Generalized-ensemble algorithms for studying protein folding" in Water and Biomolecules (edited by K.Kuwajima, Y.Goto, F.Hirata, M.Kataoka, and M.Terazima)2009

    • Author(s)
      Y.Okamoto
    • Publisher
      Springer-Verlag
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Book] Lecture Notes in Physics, Springer-Verlag2008

    • Author(s)
      Y. Sugita, A. Mitsutake, & Y. Okamoto (edited by W. Janke)
    • Publisher
      Lecture Notes
    • Data Source
      KAKENHI-PROJECT-15076213
  • [Book] 分子科学者がいどむ12の謎2005

    • Author(s)
      岡本祐幸(分担執筆)
    • Total Pages
      235
    • Publisher
      化学同人
    • Data Source
      KAKENHI-PROJECT-15076213
  • [Book] Enhanced sampling algorithms, in biomolecular simulations : methods and protocols(edited by L.Monticelli and E.Salonen)

    • Author(s)
      A.Mitsutake, Y.Mori, Y.Okamoto
    • Publisher
      Humana Press, Berlin(in press)
    • Data Source
      KAKENHI-PLANNED-22104009
  • [Journal Article] Determination of the structural ensemble of the molten globule state of a protein by computer simulations2019

    • Author(s)
      Shimizu Masahiro、Kajikawa Yukihito、Kuwajima Kunihiro、Dobson Christopher M.、Okamoto Yuko
    • Journal Title

      Proteins: Structure, Function, and Bioinformatics

      Volume: in press Pages: 635-645

    • DOI

      10.1002/prot.25688

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K07314, KAKENHI-INTERNATIONAL-15K21708
  • [Journal Article] Computational Analysis for Selectivity of Histone Deacetylase Inhibitor by Replica-Exchange Umbrella Sampling Molecular Dynamics Simulations2018

    • Author(s)
      Tsukamoto Shuichiro、Sakae Yoshitake、Itoh Yukihiro、Suzuki Takayoshi、Okamoto Yuko
    • Journal Title

      The Journal of Chemical Physics

      Volume: 148 Pages: 125102-125102

    • DOI

      10.1063/1.5019209

    • NAID

      120006545081

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071, KAKENHI-PROJECT-16KT0060
  • [Journal Article] Structure-function insights into direct lipid transfer between membranes by Mmm1-Mdm12 of ERMES2018

    • Author(s)
      Kawano Shin、Tamura Yasushi、Kojima Rieko、Bala Siqin、Asai Eri、Michel Agn?s H.、Kornmann Beno?t、Riezman Isabelle、Riezman Howard、Sakae Yoshitake、Okamoto Yuko、Endo Toshiya
    • Journal Title

      Journal of Cell Biology

      Volume: 217 Pages: 959-974

    • DOI

      10.1083/jcb.201704119

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K19338, KAKENHI-PROJECT-16K18534, KAKENHI-PLANNED-17H06414, KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071, KAKENHI-PROJECT-15H05595
  • [Journal Article] Crystal structure of human proteasome assembly chaperone PAC4 involved in proteasome formation.2017

    • Author(s)
      Kurimoto, E., Satoh, T., Ito, Y., Ishihara, E., Okamoto, K., Yagi-Utsumi, M., Tanaka, K., and Kato, K.
    • Journal Title

      Protein Sci.

      Volume: 26 Pages: 1080-1085

    • DOI

      10.1002/pro.3153

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-15H02491, KAKENHI-PROJECT-15K21680, KAKENHI-PROJECT-17K15441, KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102008, KAKENHI-PROJECT-26000014
  • [Journal Article] Two major stable structures of amyloid-forming peptides: amorphous aggregates and amyloid fibrils2017

    • Author(s)
      Nishikawa Naohiro、Sakae Yoshitake、Gouda Takuya、Tsujimura Yuichiro、Okamoto Yuko
    • Journal Title

      Molecular Simulation

      Volume: 43 Pages: 1370-1376

    • DOI

      10.1080/08927022.2017.1359746

    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Conformational effects of N-glycan core fucosylation of immunoglobulin G Fc region on its interaction with Fcγ receptor IIIa2017

    • Author(s)
      Sakae Yoshitake、Satoh Tadashi、Yagi Hirokazu、Yanaka Saeko、Yamaguchi Takumi、Isoda Yuya、Iida Shigeru、Okamoto Yuko、Kato Koichi
    • Journal Title

      Scientific Reports

      Volume: 7 Pages: 13780-13780

    • DOI

      10.1038/s41598-017-13845-8

    • NAID

      120006545940

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102008, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071, KAKENHI-PROJECT-15K07935
  • [Journal Article] Conformational changes of ubiquitin under high pressure conditions: A pressure simulated tempering molecular dynamics study2017

    • Author(s)
      Yoshiharu Mori, Yuko Okamoto
    • Journal Title

      J. Comput. Chem.

      Volume: 38 Pages: 1167-1173

    • DOI

      10.1002/jcc.24767

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K18532, KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Molecular Simulations of Protein Systems toward Drug Discovery2016

    • Author(s)
      榮 慶丈, 西川 直宏,塚本 修一朗,鈴木 孝禎,岡本 祐幸
    • Journal Title

      YAKUGAKU ZASSHI

      Volume: 136 Issue: 1 Pages: 113-120

    • DOI

      10.1248/yakushi.15-00230-4

    • NAID

      130005115191

    • ISSN
      0031-6903, 1347-5231
    • Language
      Japanese
    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071, KAKENHI-ORGANIZER-25102001
  • [Journal Article] 計算生物物理学の将来2016

    • Author(s)
      岡本祐幸
    • Journal Title

      Biophysics

      Volume: 56 Issue: 2 Pages: 075-075

    • DOI

      10.2142/biophys.56.075

    • NAID

      130005140938

    • ISSN
      0582-4052, 1347-4219
    • Language
      Japanese
    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Journal Article] Modeling 15N NMR chemical shift changes in protein backbone with pressure2016

    • Author(s)
      G. La Penna, Y. Mori, R. Kitahara, K. Akasaka, and Y. Okamoto
    • Journal Title

      Journal of Chemical Physics

      Volume: 145 Pages: 085104-085104

    • DOI

      10.1063/1.4961507

    • NAID

      120006545080

    • Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] QM/MM free energy simulations: recent progress and challenges2016

    • Author(s)
      X. Lu, D. Fang, S. Ito, Y. Okamoto, V. Ovchinnikov, and Q. Cui
    • Journal Title

      Molecular Simulation

      Volume: 42 Pages: 1056-1078

    • DOI

      10.1080/08927022.2015.1132317

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-25102008, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] “Implementation of replica-exchange umbrella sampling in the DFTB+ semiempirical quantum chemistry package”2016

    • Author(s)
      S. Ito, S. Irle, Y. Okamoto
    • Journal Title

      Computer Physics Communications

      Volume: accepted Pages: 1-10

    • DOI

      10.1016/j.cpc.2016.02.010

    • Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26410013, KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Conformational Dynamics of Oligosaccharides Characterized by Paramagnetism-Assisted NMR Spectroscopy in Conjunction with Molecular Dynamics Simulation2015

    • Author(s)
      Ying Zhang
    • Journal Title

      Advances in Experimental Medicine and Biology

      Volume: 842 Pages: 217-230

    • DOI

      10.1007/978-3-319-11280-0_14

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-25121730, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Equilibrium Molecular Thermodynamics from Kirkwood Sampling2015

    • Author(s)
      S. Somani, Y. Okamoto, A.J. Ballard, and D.J. Wales
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 119 Pages: 6155-6169

    • DOI

      10.1021/acs.jpcb.5b01800

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-INTERNATIONAL-15K21708, KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Designed-walk replica-exchange method for simulations of complex systems2015

    • Author(s)
      R. Urano, Y. Okamoto
    • Journal Title

      Computer Physics Communications

      Volume: - Pages: 380-383

    • DOI

      10.1016/j.cpc.2015.07.007

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Conformational search simulations of Trp-cage using genetic crossover2015

    • Author(s)
      Yoshitake Sakae, Tomoyuki Hiroyasu, Mitsunori Mikic, Katsuya Ishii & Yuko Okamoto
    • Journal Title

      Moleculer Simulation

      Volume: 41 Pages: 1045-1049

    • DOI

      10.1080/08927022.2015.1016937

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Predictions of tertiary structures of a-helical membrane proteins by replica-exchange method with consideration of helix deformations2015

    • Author(s)
      R. Urano, H. Kokubo, Y. Okamoto
    • Journal Title

      Journal of the Physical Society of Japan

      Volume: 84 Issue: 8 Pages: 084802-084802

    • DOI

      10.7566/jpsj.84.084802

    • ISSN
      0031-9015, 1347-4073
    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Observation of helix associations for insertion of a retinal molecule and distortions of helix structures in bacteriorhodopsin2015

    • Author(s)
      R. Urano, Y. Okamoto
    • Journal Title

      Journal of Chemical Physics

      Volume: 143 Pages: 235101-235101

    • DOI

      10.1063/1.4935964

    • NAID

      120006545079

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Conformational search simulations of Trp-cage using genetic crossover2015

    • Author(s)
      Y. Sakae, T. Hiroyasu, M. Miki, K. Ishii, and Y. Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 41 Pages: 1045-1049

    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Journal Article] New Implementations of Replica-exchange Method for Simulations of Complex Systems: Dsigned-walk and Deterministic Replica-exchange Methods2015

    • Author(s)
      R. Urano, Y. Okamoto
    • Journal Title

      Phys. Procedia.

      Volume: 68 Pages: 100-104

    • DOI

      10.1016/j.phpro.2015.07.116

    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Journal Article] Molecular dynamics simulations to clarify the concentration dependency of protein aggregation2015

    • Author(s)
      N. Nishikawa, Y. Sakae, and Y. Okamoto
    • Journal Title

      JPS Conference Proceedings

      Volume: 5

    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Journal Article] Editorial: ICMS2013 Special Issue: Proceedings of the 3rd International Conference on Molecular Simulation2015

    • Author(s)
      Y. Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 41 Pages: 779-779

    • DOI

      10.1080/08927022.2015.1048075

    • Data Source
      KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Replica-exchange molecular dynamics simulation for understanding the initial process of amyloid peptide aggregation2015

    • Author(s)
      N. Nishikawa, P.H. Nguyen, P. Derreumaux, and Y. Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 41 Pages: 1041-1044

    • DOI

      10.1080/08927022.2014.938445

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Deterministic replica-exchange method without pseudo random numbers for simulations of complex systems2015

    • Author(s)
      R. Urano, Y. Okamoto
    • Journal Title

      Computer Physics Communications

      Volume: 197 Pages: 128-135

    • DOI

      10.1016/j.cpc.2015.08.020

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Molecular Dynamics Simulations to Clarify the Concentration Dependency of Protein Aggregation2015

    • Author(s)
      N. Nishikawa, Y. Sakae, and Y. Okamoto
    • Journal Title

      JPS Conference Proceedings

      Volume: * Pages: 011020-011020

    • DOI

      10.7566/jpscp.5.011020

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] A conformational search method for protein systems using genetic crossover and metropolis criterion2014

    • Author(s)
      Yoshitake Sakae, Tomoyuki Hiroyasu, Mitsunori Miki, Katsuya Ishii, Yuko Okamoto
    • Journal Title

      J. Phys.: Conf. Ser.

      Volume: 487 Pages: 12003-12003

    • DOI

      10.1088/1742-6596/487/1/012003

    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Journal Article] A conformational search method for protein systems using genetic crossover and metropolis criterion2014

    • Author(s)
      Y. Sakae, T. Hiroyasu, M. Miki, K. Ishii, and Y. Okamoto
    • Journal Title

      Journal of Physics: Conference Series

      Volume: 487

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Journal Article] Prediction of ligand binding affinity by the combination of replica-exchange method and double-decoupling method2014

    • Author(s)
      Y. Okamoto, H. Kokubo, and T. Tanaka
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 10 Pages: 3563-3569

    • DOI

      10.1021/ct500539u

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Exploration of conformational spaces of high-mannose-type oligosaccharides by an NMR-validated simulation2014

    • Author(s)
      T.Yamaguchi, Y.Sakae, Y.Zhang, S.Yamamoto, Y.Okamoto, and K.Kato
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 53 Pages: 10941-10944

    • DOI

      10.1002/ange.201406145

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-24249002, KAKENHI-PROJECT-24750170, KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102008, KAKENHI-PROJECT-26560451
  • [Journal Article] A conformational search method for protein systems using genetic crossover and Metropolis criterion2014

    • Author(s)
      Yoshitake Sakae, Tomoyuki Hiroyasu, Mitsunori Miki, Katsuya Ishii, and Yuko Okamoto
    • Journal Title

      Journal of Physics: Conference Series

      Volume: 487

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Journal Article] Salt effects on hydrophobic-core formation in folding of a helical mini protein studied by molecular dynamics simulations2014

    • Author(s)
      T. Yoda, Y. Sugita, and Y. Okamoto
    • Journal Title

      Proteins

      Volume: 82 Pages: 933-943

    • DOI

      10.1002/prot.24467

    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071, KAKENHI-PROJECT-25330355
  • [Journal Article] Exploration of conformational spaces of high-mannose-type oligosaccharides by an NMR-validated simulation2014

    • Author(s)
      T. Yamaguchi, Y. Sakae, Y. Zhang, S. Yamamoto, Y. Okamoto, and K. Kato
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 53 Pages: 10941-10944

    • DOI

      10.1002/anie.201406145

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Simulated tempering with fast on-the-fly weight determination2013

    • Author(s)
      P.H. Nguyen, Y. Okamoto, and P. Derreumaux
    • Journal Title

      Journal of Chemical Physics

      Volume: 138

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Amino-acid-dependent main-chain torsion-energy terms for protein systems2013

    • Author(s)
      Y. Sakae and Y. Okamoto
    • Journal Title

      Journal of Chemical Physics

      Volume: 138

    • DOI

      10.1063/1.4774159

    • NAID

      120006545077

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Improvement of the backbone-torsion-energy term in the force field for protein systems by double Fourier series expansion2013

    • Author(s)
      Y. Sakae and Y. Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 39 Pages: 85-93

    • DOI

      10.1080/08927022.2012.705432

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Simulated tempering with fast on-the-fly weight determination2013

    • Author(s)
      P.H. Nguyen, Y. Okamoto, and P. Derreumaux
    • Journal Title

      Journal of Chemical Physics

      Volume: 138

    • DOI

      10.1063/1.4792046

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Free-energy analyses of a proton transfer reaction by smulated-tempering umbrella sampling and first principles molecular dynamics simulations2013

    • Author(s)
      Yoshiharu Mori, Yuko Okamoto
    • Journal Title

      Physical Review E

      Volume: Volume 87

    • DOI

      10.1103/physreve.87.023301

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-11J05693, KAKENHI-PLANNED-20107002
  • [Journal Article] Application of simulated tempering and magnetizing to a two-dimensional Potts model2013

    • Author(s)
      T. Nagai, Y. Okamoto, and W. Janke
    • Journal Title

      Journal of Statistical Mechanics: Theory and Experiment 2013

      Volume: P02039 Pages: 21-21

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Improvement of the backbone-torsion-energy term in the force field for protein systems by the double Fourier series expansion2013

    • Author(s)
      Y. Sakae and Y. Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 39 Pages: 85-93

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Free-energy analyses of a proton transfer reaction by simulated-tempering umbrella sampling and first-principles molecular dynamics simulations2013

    • Author(s)
      Y. Mori and Y. Okamoto
    • Journal Title

      Physical Review E

      Volume: 87

    • NAID

      120006545928

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Application of simulated tempering and magnetizing to a two-dimensional Potss model2013

    • Author(s)
      T. Nagai, Y. Okamoto, and W. Janke
    • Journal Title

      Journal of Statistical Mechanics: Theory and Experiment

      Volume: 2013

    • DOI

      10.1088/1742-5468/2013/02/p02039

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Amino-aciddependent main-chain torsion-energy terms for protein systems2013

    • Author(s)
      Y. Sakae and Y. Okamoto
    • Journal Title

      Journal of Chemical Physics

      Volume: 138

    • NAID

      120006545077

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Crossover scaling in the two-dimensional three-state Potts model2013

    • Author(s)
      Tetsuro Nagai, Yuko Okamoto, and Wolfhard Janke
    • Journal Title

      Condensed Matter Physics

      Volume: 16

    • DOI

      10.5488/cmp.16.23605

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Two-dimensional replica-exchange method for predicting protein-ligand binding structures2013

    • Author(s)
      Hironori Kokubo1, Toshimasa Tanaka, Yuko Okamoto
    • Journal Title

      Journal of Computational Chemistry

      Volume: 34 Pages: 2601-2614

    • DOI

      10.1002/jcc.23427

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Prediction of protein-ligand binding structures by replica-exchange umbrella sampling simulations : application to kinase systems2013

    • Author(s)
      Hironori Kokubo, Toshimasa Tanaka, Yuko Okamoto
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 9 Pages: 4660-4671

    • DOI

      10.1021/ct4004383

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102009, KAKENHI-PROJECT-25247071
  • [Journal Article] Molecular simulations in generalized ensemble2012

    • Author(s)
      Y. Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 38 Pages: 1282-1296

    • DOI

      10.1080/08927022.2012.690878

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] タンパク質分子シミュレーションのための力場関数2012

    • Author(s)
      榮慶丈、依田隆夫、杉田有治、岡本祐幸
    • Journal Title

      日本物理学会誌

      Volume: 67 Pages: 343-349

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Simulated tempering and magnetizing simulations of the Ising model2012

    • Author(s)
      T. Nagai and Y. Okamoto
    • Journal Title

      Physics Procedia

      Volume: 34 Pages: 100-104

    • DOI

      10.1016/j.phpro.2012.05.016

    • NAID

      120006545937

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Phase Behavior of a Lipid Bilayer System Studied by a Replica-Exchange Molecular Dynamics Simulation2012

    • Author(s)
      T.Nagai, R.Ueoka, Y.Okamoto
    • Journal Title

      Journal of the Physical Society of Japan

      Volume: 81 Issue: 2 Pages: 024002-024002

    • DOI

      10.1143/jpsj.81.024002

    • NAID

      40019151203

    • ISSN
      0031-9015, 1347-4073
    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002, KAKENHI-PROJECT-24656509, KAKENHI-PLANNED-20107007
  • [Journal Article] タンパク質系分子シミュレーションのための力場関数2012

    • Author(s)
      榮慶丈,依田隆夫,杉田有治,岡本祐幸
    • Journal Title

      日本物理学会誌

      Volume: 67巻 Pages: 343-349

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] 疎水コアとα-ヘリックスを含む小蛋白質のフォールディングシミュレーション2012

    • Author(s)
      依田隆夫、杉田有治、岡本祐幸
    • Journal Title

      生物物理(日本生物物理学会誌)

      Volume: 52 Pages: 22-23

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Simulated tempering and magnetizing: Application of two-dimensional simulated tempering to the two-dimensional Ising model and its crossover2012

    • Author(s)
      T. Nagai and Y. Okamoto
    • Journal Title

      Physical Review E

      Volume: 86

    • DOI

      10.1103/physreve.86.056705

    • NAID

      120006545927

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Residual entropy of ordinary ice calculated from multicanonical Monte Carlo simulations2012

    • Author(s)
      B. A. Berg
    • Journal Title

      Molecular Simulation

      Volume: 38 Pages: 856-860

    • DOI

      10.1080/08927022.2011.651140

    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-20107001, KAKENHI-PLANNED-20107002
  • [Journal Article] Generalized-ensemble algorithms for protein folding and unfolding2012

    • Author(s)
      Y.Okamoto
    • Journal Title

      Current Physical Chemistry

      Volume: 2 Pages: 92-106

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] temperature and pressure dependence of complex systems2012

    • Author(s)
      Generalized-ensemble algorithms for studying Y. Mori, Y. Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 38 Pages: 452-457

    • DOI

      10.1080/08927022.2011.651139

    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-20107001
  • [Journal Article] Phase behavior of a lipid bilayer system studied by a replica-exchange molecular dynamics simulation2012

    • Author(s)
      T. Nagai, R. Ueoka, and Y. Okamoto
    • Journal Title

      Journal of the Physical Society of Japan

      Volume: 81

    • NAID

      40019151203

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Ab initio prediction of protein-ligand binding structures by replica-exchange umbrella sampling simulations2011

    • Author(s)
      H. Kokubo, T. Tanaka, and Y. Okamoto
    • Journal Title

      Journal of Computational Chemistry

      Volume: 32 Pages: 2810-2821

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Dynamic structure of the polytheonamide B channel studied by normal mode analysis2011

    • Author(s)
      T. Mori, H. Kokubo, S. Oiki, and Y. Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 37 Pages: 975-985

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Drug design by generalized-ensemble simulations2011

    • Author(s)
      Y. Okamoto
    • Journal Title

      Current Pharmaceutical Design

      Volume: 17 Pages: 1758-1772

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Generalized-ensemble simulations in protein science2011

    • Author(s)
      Y.Mori, A.Mitsutake, Y.Okamoto
    • Journal Title

      Proceedings of the 4th Japan-Russia International Workshop MSSMBS'10 "Molecular Simulations Studies in Material and Biological Sciences"

      Pages: 46-60

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] New conformational search method using genetic algorithm and knot theory for proteins2011

    • Author(s)
      Y.Sakae, T.Hiroyasu, M.Miki, Y.Okamoto
    • Journal Title

      Pacific Symposium on Biocomputing

      Volume: 16 Pages: 217-228

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Protein structure predictions by parallel simulated annealing molecular dynamics using genetic crossover2011

    • Author(s)
      Y. Sakae, T. Hiroyasu, M. Miki, and Y. Okamoto
    • Journal Title

      Journal of Computational Chemistry

      Volume: 32 Pages: 1353-1360

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Determination method of the balance of the secondary-structure-forming tendencies of force fields2010

    • Author(s)
      Y.Sakae, Y.Okamoto
    • Journal Title

      Molecular Simulation 36

      Pages: 159-165

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Controlling the secondary-structure-forming tendencies of proteins by a backbone torsion-energy term2010

    • Author(s)
      Y.Sakae, Y.Okamoto
    • Journal Title

      Molecular Simulation 36

      Pages: 138-158

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] 計算機シミュレーションによるアミロイド病発現原理の追求2010

    • Author(s)
      岡本祐幸
    • Journal Title

      Medical Bio(10月別冊、特集「揺らぎと生体機能」)

      Pages: 17-20

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] 『拡張アンサンブル法』の特集にあたって2010

    • Author(s)
      岡本祐幸
    • Journal Title

      分子シミュレーション研究会会誌"アンナンブル"

      Volume: 12 Pages: 6-7

    • NAID

      130004566668

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] マルチカノニカルレプリカ交換分子動力学法による小蛋白質の折れ畳みシミュレーション2010

    • Author(s)
      依田隆夫、杉田有治、岡本祐幸
    • Journal Title

      分子シミュレーション研究会会誌"アンサンブル"

      Volume: 12 Pages: 15-18

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Hydrophobic core formation and dehydration in protein folding studied by generalized-ensemble simulations2010

    • Author(s)
      T.Yoda, Y.Sugita, Y.Okamoto
    • Journal Title

      Biophysical Journal 99

      Pages: 1637-1644

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Replica-exchange molecular dynamics simulations for various constant temperature algorithms2010

    • Author(s)
      Y.Mori, Y.Okamoto
    • Journal Title

      Journal of the Physical Society of Japan

      Volume: 79

    • NAID

      40017205438

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Hydrophobic core formation and dehydration in protein folding studied by generalized-ensemble simulations2010

    • Author(s)
      T. Yoda, Y. Sugita, and Y. Okamoto
    • Journal Title

      Biophysical Journal

      Volume: 99 Pages: 1637-1644

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Generalized-ensemble algorithms for the isobaric-isothermal ensemble.2010

    • Author(s)
      Y.Mori , Y.Okamoto
    • Journal Title

      Journal of the Physical Society of Japan 79

    • NAID

      40017205440

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Generalized-ensemble algorithms for the isobaric-isothermal ensemble2010

    • Author(s)
      Y. Mori and Y. Okamoto
    • Journal Title

      Journal of the Physical Society of Japan

      Volume: 79

    • NAID

      40017205440

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Multi-dimensional multicanonical algorithm, simulated tempering, replica-exchange method, and all that2010

    • Author(s)
      A.Mitsutake, Y.Mori, Y.Okamoto
    • Journal Title

      Physics Procedia

      Volume: 4 Pages: 89-105

    • NAID

      120006545938

    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Helix-hairpin transitions of a designed peptide studied by a generalized-ensemble simulations2010

    • Author(s)
      S.G.Itoh, A.Tamura, Y.Okamoto
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 6 Pages: 979-983

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Helix-hairpin transitions of a designed peptide studied by a generalized-ensemble simulation2010

    • Author(s)
      S.G. Itoh, A. Tamura, and Y. Okamoto
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 6 Pages: 979-983

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Folding simulations of three proteins having all alpha-helix, all beta-stand and alpha/beta structures2010

    • Author(s)
      Y. Sakae and Y. Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 36 Pages: 302-310

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Generalized-ensemble algorithms for the isobaric-isothermal ensembles2010

    • Author(s)
      Y.Mori, Y.Okamoto
    • Journal Title

      Journal of the Physical Society of Japan

      Volume: 79

    • NAID

      40017205440

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Optimisation of OPLS-UA force-field parameters for protein systems using protein data bank2010

    • Author(s)
      Y.Sakae, Y.Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 36 Pages: 1147-1155

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Hydrophobic core formation and dehydration in protein folding studied by generalized ensemble simulations2010

    • Author(s)
      T.Yoda, Y.Sugita, Y.Okamoto
    • Journal Title

      Biophysical Journal

      Volume: 99 Pages: 1637-1644

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Replica-exchange method in van der Waals radius space : overcoming steric restrictions for biomolecules2010

    • Author(s)
      S.G.Itoh, H.Okumura, Y.Okamoto
    • Journal Title

      Journal of Chemical Physics

      Volume: 132

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Replica-exchange method in van der Waals radius space: overcoming steric resctirctions for biomolecules2010

    • Author(s)
      S.G. Itoh, H. Okumura, and Y. Okamoto
    • Journal Title

      Journal of Chemical Physics

      Volume: 132

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Optimisation of OPLS-UA force-field parameters for protein systems using protein data bank2010

    • Author(s)
      Y. Sakae and Y. Okamoto
    • Journal Title

      Molecular Simulation

      Volume: 36 Pages: 1148-1156

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Dependency of ligand free energy landscapes on charge parameters and solvent models2010

    • Author(s)
      Y. Okamoto, T. Tanaka, and H. Kokubo
    • Journal Title

      Journal of Computer-Aided Molecular Design

      Volume: 24 Pages: 699-712

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Replica-exchange molecular dynamics simulations for various constant temperature algorithms2010

    • Author(s)
      Y. Mori and Y. Okamoto
    • Journal Title

      Journal of the Physical Society of Japan

      Volume: 79

    • NAID

      40017205438

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] タンパク質系のポテンシャル関数の比較と改良2009

    • Author(s)
      榮慶丈、依田隆夫、杉田有治、岡本祐幸
    • Journal Title

      アンサンブル 11

      Pages: 8-12

    • NAID

      130004566636

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Multidimensional generalized-ensemble algorithms for complex systems2009

    • Author(s)
      A. Mitsutake and Y. Okamoto
    • Journal Title

      Journal of Chemical Physics

      Volume: 130

    • NAID

      120001804816

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Folding simulations of gramicidin A into the β -helix conformations: simulated annealing molecular dynamics study2009

    • Author(s)
      T. Mori and Y. Okamoto
    • Journal Title

      Journal of Chemical Physics

      Volume: 131

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Generalized-ensemble algorithms for protein structure predictions2009

    • Author(s)
      Y.Sakae, Y.Okamoto
    • Journal Title

      Proceedings of International Conference on Computational & Experimental Engineering (Tech Science Press, Norcross) and Sciences 2009 (ICCES'09)

      Pages: 791-801

    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] From multidimensional replica-exchange method to multidimensional multicanonical algorithm and simulated tempering2009

    • Author(s)
      A. Mitsutake and Y. Okamoto
    • Journal Title

      Physical Review E

      Volume: 79

    • NAID

      120006545926

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Multidimensional generalized-ensemble algorithms for complex systems2009

    • Author(s)
      A.Mitsutake, Y.Okamoto
    • Journal Title

      Journal of Chemical Physics 130

    • NAID

      120001804816

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Multidimensional generalized- ensemble algorithms for complex systems.2009

    • Author(s)
      A.Mitsutake , Y.Okamoto
    • Journal Title

      Journal of Chemical Physics 130

    • NAID

      120001804816

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] From multidimensional replica-exchange method to multidimensional multicanonical algorithm and simulated tempering2009

    • Author(s)
      A.Mitsutake, Y.Okamoto
    • Journal Title

      Physical Review E 79

    • NAID

      120006545926

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Analysis of helix-helix interactions of bacteriorhodopsin by replica-exchange simulations2009

    • Author(s)
      H. Kokubo, Y. Okamoto
    • Journal Title

      Biophysical Journal 96(in press)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20038025
  • [Journal Article] Folding simulations of gramicidin A into the β-helix conformations : simulated annealing molecular dynamics study2009

    • Author(s)
      T.Mori, Y.Okamoto
    • Journal Title

      Journal of Chemical Physics 131

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Journal Article] Thermodynamics of two lattice ice models in three dimensions2008

    • Author(s)
      C. muguruma, Y. Okamoto, B.A. Berg
    • Journal Title

      Physical Review E 78

    • NAID

      120006545924

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20038025
  • [Journal Article] Temperuature and pressure dependence of alanine dipeptide studied by multibaric-multithermal molecular dynamics simulations2008

    • Author(s)
      H. Okumura, Y. Okamoto
    • Journal Title

      Journal of Physical Chemistry B 112

      Pages: 12038-12049

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20038025
  • [Journal Article] Multibaric-multithermal molecular dynamics simulation of alanine dipe ptide in explicit water2007

    • Author(s)
      H. Okumura & Y. Okamoto
    • Journal Title

      Bulletin of the Chemical Society of Japan 80

      Pages: 1114-1123

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] A new generalized-ensemble algorithm : multicanonical-multioverlap algorithm2007

    • Author(s)
      S.G.Itoh, Y.Okamoto
    • Journal Title

      Molecular Simulation 33

      Pages: 83-90

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Generalized-ensemble algorithms for molecular dynamics simulations2007

    • Author(s)
      S.G.Itoh, H.Okumura, Y.Okamoto
    • Journal Title

      Molecular Simulation 33

      Pages: 47-56

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Replica-exchange moleculr dynamics simulation of diffracted X-ray tracking2007

    • Author(s)
      Y.Kawashima, Y.C.Sasaki, Y.Sugita, T.Yoda, Y.Okamoto
    • Journal Title

      Molecular Simulation 33

      Pages: 97-102

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Cooperative folding mechanism of a β-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation2007

    • Author(s)
      T.Yoda, Y.Sugita, Y Okamoto
    • Journal Title

      PROTEINS : Structure, Function, and Bioinformatics 66

      Pages: 846-859

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Multibaric-multithermal molecular dynamics simulation : generalized Nose-Poincare-Andersen method2007

    • Author(s)
      H.Okumura, Y.Okamoto
    • Journal Title

      Molecular Simulation 33

      Pages: 91-96

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Residual entropy of ordinary ice from multicanonical simulations2007

    • Author(s)
      B.A.Berg, C.Muguruma, Y.Okamoto
    • Journal Title

      Physical Review B 75

    • NAID

      120006545083

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Effective sampling in the configurational space of a small peptide by the multicanonical-multioverlap algorithm2007

    • Author(s)
      S.G. Itoh & Y. Okamoto
    • Journal Title

      Physical Review E 76

      Pages: 2670510-2670510

    • NAID

      120006545922

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Explicit symplectic integrators of molecular dynamics algorithms for rigid-body molecules in the canonical, isobaric-isothermal, and related ensembles2007

    • Author(s)
      H.Okumura, S.G.Itoh, Y.Okamoto
    • Journal Title

      Journal of Chemical Physics 126

    • NAID

      120006545076

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Replica-exchange methods and predictions of helix configuration of membrane proteins2006

    • Author(s)
      H.Kokubo, Y.Okamoto
    • Journal Title

      Molecular Simulation 32

      Pages: 791-801

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Theoretical studies of transition states by the multioverlap molecular dynamics methods2006

    • Author(s)
      S.G.Itoh, Y.Okamoto
    • Journal Title

      Journal of Chemical Physics 124

    • NAID

      120000975328

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Secondary-structure design of proteins by a backbone torsion energy2006

    • Author(s)
      Y.Sakae, Y.Okamoto
    • Journal Title

      Journal of Physical Society of Japan 75

    • NAID

      110004702343

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] 拡張アンサンブル法による膜タンパク質の立体構造予測2006

    • Author(s)
      小久保裕功, 岡本祐幸
    • Journal Title

      統計数理 54

      Pages: 211-222

    • NAID

      120006019067

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] 生体系における大規模分子シミュレーション2006

    • Author(s)
      岡本祐幸
    • Journal Title

      応用数理 16

      Pages: 15-19

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Multibaric-multithermal ensemble molecular dynamics simulations2006

    • Author(s)
      H.Okumura, Y.Okamoto
    • Journal Title

      Journal of Computational Chemistry 27

      Pages: 379-395

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Structures of a peptide fragment of β2-microglobulin studied by replica-exchange molecular dynamics simulations - towards the understanding of the mechanism of amyloid formation2005

    • Author(s)
      M.Nishino, Y.Sugita, T.Yoda, Y.Okamoto
    • Journal Title

      FEBS Letters 579

      Pages: 5425-5429

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Molecular simulations in the multibaric-multithermal ensembles2005

    • Author(s)
      H.Okurnura, Y.Okamoto
    • Journal Title

      Computer Physics Communications 169

      Pages: 317-321

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] PDBデータベースを用いたタンパク質力場パラメータの最適化2005

    • Author(s)
      榮慶丈, 岡本祐幸
    • Journal Title

      生物物理 45

      Pages: 145-148

    • NAID

      110001801950

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] マルチバーリック・マルチサーマルアンサンブルにおけるレナード・ジョーンズ流体のシミュレーション2005

    • Author(s)
      奥村久士, 岡本祐幸
    • Journal Title

      物性研究 85

      Pages: 341-346

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Multibaric-multithermal ensemble simulations for fluid systems2005

    • Author(s)
      H.Okumura, Y.Okamoto
    • Journal Title

      Physica A 350

      Pages: 150-158

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Molecular dynamics simulations of DNA dimers based on replica-exchange umbrella sampling. II. Free energy analysis2005

    • Author(s)
      Murata, Y.Sugita, Y.Okamoto
    • Journal Title

      Journal of Theoretical & Computational Chemistry 4

      Pages: 433-448

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Effects of the fixed end in single-molecule imaging techniques : A replica-exchange molecular dynamics study2005

    • Author(s)
      Y.Kawashima, Y.Sugita, T.Yoda, Y.Okamoto
    • Journal Title

      Chemical Physics Letters 414

      Pages: 449-455

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Replica-exchange molecular dynamics simulation of small peptide in water and in ethanol2005

    • Author(s)
      K.Yoshida, T.Yamaguchi, Y.Okamoto
    • Journal Title

      Chemical Physics Letters 412

      Pages: 280-284

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Molecular mechanism for stabilizing a short helical peptide studied by generalized-ensemble simulations with explicit solvent2005

    • Author(s)
      Y.Sugita, Y.Okamoto
    • Journal Title

      Biophysical Journal 88

      Pages: 3180-3190

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Molecular dynamics simulations of DNA dimers based on replica-exchange umbrella sampling. I. Test of sampling efficiency2005

    • Author(s)
      K.Murata, Y.Sugita, Y.Okamoto
    • Journal Title

      Journal of Theoretical & Computational Chemistry 4

      Pages: 411-432

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] タンパク質のフォールディングシミュレーションから立体構造予測問題に迫る2005

    • Author(s)
      岡本祐幸, 高田彰二
    • Journal Title

      現代化学 408

      Pages: 47-53

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Generalized-ensemble algorithms : enhanced sampling techniques for Monte Carlo and molecular dynamics simulations2004

    • Author(s)
      Y.Okamoto
    • Journal Title

      J.Mol.Graphics Modell. 22

      Pages: 425-439

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Prediction of membrane protein structures by replica-exchange Monte Carlo simulations : case of two helices2004

    • Author(s)
      H.Kokubo, Y.Okamoto
    • Journal Title

      J.Chem.Phys. 120

      Pages: 10837-10847

    • NAID

      120006545074

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Multi-overlap molecular dynamics methods for biomolecular systems2004

    • Author(s)
      S.G.Itoh, Y.Okamoto
    • Journal Title

      Chem.Phys.Lett. 400

      Pages: 308-313

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Replica-exchange extensions of simulated tempering method2004

    • Author(s)
      A.Mitsutake, Y.Okamoto
    • Journal Title

      J.Chem.Phys. 121

      Pages: 2491-2504

    • NAID

      120006545075

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Protein force-field parameters optimized with the Protein Data Bank. II.Comparisons of force fields by folding simulations of short peptides2004

    • Author(s)
      Y.Sakae, Y.Okamoto
    • Journal Title

      J.Theor.Comput.Chem. 3

      Pages: 359-378

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Comparisons of force fields for proteins by generalized-ensemble simulations2004

    • Author(s)
      T.Yoda, Y.Sugita, Y.Okamoto
    • Journal Title

      Chem.Phys.Lett. 386

      Pages: 460-467

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Secondary-structure preferences of force fields for proteins evaluated by generalized-ensemble simulations2004

    • Author(s)
      T.Yoda, Y.Sugita, Y.Okamoto
    • Journal Title

      Chem.Phys. 307

      Pages: 269-283

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Monte Carlo simulations in new generalized isobaric-isothermal ensemble2004

    • Author(s)
      H.Okumura, Y.Okamoto
    • Journal Title

      Trans.MRS-J. 29

      Pages: 3783-3786

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Monte Carlo simulations in generalized isobaric-isothermal ensembles2004

    • Author(s)
      H.Okumura, Y.Okamoto
    • Journal Title

      Phys.Rev.E 70

      Pages: 26702-26702

    • NAID

      120006545921

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Multibaric-multithermal ensemble simulation for simple liquids2004

    • Author(s)
      H.Okumura, Y.Okamoto
    • Journal Title

      Mol.Sim. 30

      Pages: 847-852

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] New approach to the first-order phase transition of Lennard-Jones fluids2004

    • Author(s)
      C.Muguruma, Y.Okamoto, M.Mikami
    • Journal Title

      J.Chem.Phys. 120

      Pages: 7557-7563

    • NAID

      120006545073

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Classification and prediction of low-energy membrane protein helix configurations by replica-exchange Monte Carlo method2004

    • Author(s)
      H.Kokubo, Y.Okamoto
    • Journal Title

      J.Phys.Soc.Jpn. 73

      Pages: 2571-2585

    • NAID

      110001955018

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Liquid-gas phase transitions studied by multibaric-multithermal Monte Carlo simulations2004

    • Author(s)
      H.Okumura, Y.Okamoto
    • Journal Title

      J.Phys.Soc.Jpn. 73

      Pages: 3304-3311

    • NAID

      110001979299

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Self-assembly of transmembrane helices of bacteriorhodopsin by a replica-exchange simulation2004

    • Author(s)
      H.Kokubo, Y.Okamoto
    • Journal Title

      Chem.Phys.Lett. 392

      Pages: 168-175

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Combination of the replica-exchange Monte Carlo method and the reference interaction site model theory for simulating a peptide molecule in aqueous solution2004

    • Author(s)
      A.Mitsutake, M.Kinoshita, Y.Okamoto, F.Hirata
    • Journal Title

      J.Phys.Chem.B 108

      Pages: 19002-19012

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Molecular dynamics simulations in multibaric-multithermal ensemble2004

    • Author(s)
      H.Okumura, Y.Okamoto
    • Journal Title

      Chem.Phys.Lett. 383

      Pages: 403-408

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Journal Article] Protein force-field parameters optimized with the Protein Data Bank. I.Force-filed optimizations2004

    • Author(s)
      Y.Sakae, Y.Okamoto
    • Journal Title

      J.Theor.Comput.Chem. 3

      Pages: 339-358

    • Data Source
      KAKENHI-PROJECT-15076213
  • [Presentation] Generalized-ensemble simulations of biological molecular assembly and artificial molecular assembly2018

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 6th International Symposium on Dynamical Ordering of Biological Systems for Creation of Integrated Functions
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble simulations of biological molecular assembly and artificial molecular assembly2018

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 6th International Symposium on Dynamical Ordering of Biological Systems for Creation of Integrated Functions
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Energy landscape of biomolecular systems studied by generalized-ensemble simulations2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Energy Landscapes 2017
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Conformational analysis of high mannose-type oligosaccharides by self-guided langevin dynamics simulation2017

    • Author(s)
      Yoshitake Sakae, Takumi Yamaguchi, Xiongwu Wu, Bernard R. Brooks, Koichi Kato, and Yuko Okamoto
    • Organizer
      The 5th International Symposium on Dynamical Ordering of Biomolecular Systems
    • Place of Presentation
      東京大学駒場キャンパス(東京都目黒区)
    • Year and Date
      2017-01-21
    • Int'l Joint Research
    • Data Source
      KAKENHI-INTERNATIONAL-15K21708
  • [Presentation] Efficient sampling methods for classical and quantum simulations2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      TSRC Workshop on the Chemistry and Dynamics in Complex Environments (CHEM-DiCE)
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Biomolecular simulations in generalized ensemble Frontier Bioorganization2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Forum 2017: Dynamical Ordering and Integrated Functions of Biomolecular Systems
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Biomolecular simulations in generalized ensemble Frontier Bioorganization2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Forum 2017: Dynamical Ordering and Integrated Functions of Biomolecular Systems
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble algorithms: enhanced conformational sampling methods2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 16th KIAS Protein Folding Winter School
    • Place of Presentation
      High 1 Resort, Korea
    • Year and Date
      2017-01-16
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Classical and quantum molecular simulations in generalized ensemble2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      International Workshop on Molecular Simulations
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Energy landscape of biomolecular systems studied by generalized-ensemble simulations2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Energy Landscapes 2017
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble algorithms for advanced materials simulations2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      IUMRS-ICAM 2017, The 15th International Conference on Advanced Materials
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Classical and quantum molecular simulations in generalized ensemble2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      International Workshop on Molecular Simulations
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms: enhanced conformational sampling methods2017

    • Author(s)
      Yuko Okamoto
    • Organizer
      The 16th KIAS Protein Folding Winter School
    • Place of Presentation
      High 1 Resort,seoul, Korea
    • Year and Date
      2017-01-16
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for materials and biomolecular simulations [Keynote Talk]2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Molecular Simulation Studies in Material
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 蛋白質高圧変性の分子シミュレーション2017

    • Author(s)
      岡本 祐幸
    • Organizer
      第58回高圧討論会「生物関連高圧シンポジウム:高圧力と生命・生体分子」
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Biomolecular simulations in generalized ensemble2017

    • Author(s)
      Yuko Okamoto
    • Organizer
      Frontier Bioorganization Forum 2017: Dynamical ordering and integrated functions of biomolecular systems
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-INTERNATIONAL-15K21708
  • [Presentation] Generalized-ensemble algorithms for advanced materials simulations2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      IUMRS-ICAM 2017, The 15th International Conference on Advanced Materials
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Efficient sampling methods for classical and quantum simulations2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      TSRC Workshop on the Chemistry and Dynamics in Complex Environments (CHEM-DiCE)
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble algorithms for materials and biomolecular simulations [Keynote Talk]2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Molecular Simulation Studies in Material
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Conformational analysis of high mannose-type oligosaccharides by self-guided langevin dynamics simulation2017

    • Author(s)
      Yoshitake Sakae, Takumi Yamaguchi, Xiongwu Wu, Bernard R. Brooks, Koichi Kato, and Yuko Okamoto
    • Organizer
      The 5th International Symposium on Dynamical Ordering of Biomolecular Systems
    • Place of Presentation
      東京大学駒場キャンパス(東京都目黒区)
    • Year and Date
      2017-01-21
    • Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] 蛋白質高圧変性の分子シミュレーション2017

    • Author(s)
      岡本 祐幸
    • Organizer
      第58回高圧討論会「生物関連高圧シンポジウム:高圧力と生命・生体分子」
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms: enhanced conformational sampling methods2017

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 16th KIAS Protein Folding Winter School
    • Place of Presentation
      High 1 Resort, Korea
    • Year and Date
      2017-01-16
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 拡張アンサンブル法による複雑系の計算機シミュレーション2016

    • Author(s)
      岡本祐幸
    • Organizer
      国際高等研究所 研究プロジェクト 「分子基盤に基づく生体機能ネットワークとダイナミクスの解明」第5回研究会
    • Place of Presentation
      木津川市、日本
    • Year and Date
      2016-02-18
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Protein dynamics studied by generalized-ensemble simulations2016

    • Author(s)
      Yuko Okamoto
    • Organizer
      The 251st American Chemical Society National Meeting
    • Place of Presentation
      San Diego, U.S.A
    • Year and Date
      2016-03-13
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble simulations of complex systems2016

    • Author(s)
      Yuko Okamoto
    • Organizer
      2016 NCTS March Workshop on Critical Phenomena and Complex Systems
    • Place of Presentation
      Hsinchu, Taiwan
    • Year and Date
      2016-03-28
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Introduction to Generalized-Ensemble MD Simulations Including the Replica-Exchange Umbrella Sampling (REUS) Method2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      2-Day Mini Workshop: Approximate DFT Methods for Extended Systems
    • Place of Presentation
      Nagoya, Japan
    • Year and Date
      2016-06-20
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Enhanced sampling methods for classical and quantum molecular simulations2016

    • Author(s)
      Yuko Okamoto
    • Organizer
      The 9th Korea-Japan Seminars on Biomolecular Sciences: Experiments and Simulations
    • Place of Presentation
      Gyeongju, Korea
    • Year and Date
      2016-11-14
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Introduction to Generalized-Ensemble MD Simulations Including the Replica-Exchange Umbrella Sampling (REUS) Method2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      2-Day Mini Workshop: Approximate DFT Methods for Extended Systems
    • Place of Presentation
      Nagoya, Japan
    • Year and Date
      2016-06-20
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] レプリカ交換分子動力学シミュレーションによる抗体及びFc受容体内の糖鎖分子の解析2016

    • Author(s)
      榮 慶丈,山口拓実,佐藤匡史,谷中冴子,加藤晃一,岡本祐幸
    • Organizer
      第43回生体分子科学討論会
    • Place of Presentation
      名古屋大学大学院理学研究科(愛知県名古屋市)
    • Year and Date
      2016-06-25
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Enhanced sampling methods for classical and quantum molecular simulations2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 9th Korea-Japan Seminars on Biomolecular Sciences: Experiments and Simulations
    • Place of Presentation
      Gyeongju, Korea
    • Year and Date
      2016-11-14
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Energy landscape explored by generalized-ensemble algorithms2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Energy Landscapes: Theory and Applications (ELAND 2016)
    • Place of Presentation
      Porquerolles, France
    • Year and Date
      2016-06-27
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms and free energy calculations2016

    • Author(s)
      Yuko Okamoto
    • Organizer
      Symposium “Free Energy Landscape of Protein Folding and Dynamics by Simulations Based on Enhanced Conformational Sampling Algorithms”
    • Place of Presentation
      Nagoya Univ.(Nagoya,Aichi, Japan)
    • Year and Date
      2016-08-06
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for classical and quantum molecular simulations (Plenary talk)2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 4th International Conference on Molecular Simulation (ICMS2016)
    • Place of Presentation
      Shanghai, China
    • Year and Date
      2016-10-23
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble algorithms for classical and quantum molecular simulations (Plenary talk)2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 4th International Conference on Molecular Simulation (ICMS2016)
    • Place of Presentation
      Shanghai, China
    • Year and Date
      2016-10-23
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble simulations of complex systems2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      2016 NCTS March Workshop on Critical Phenomena and Complex Systems
    • Place of Presentation
      Hsinchu, Taiwan
    • Year and Date
      2016-03-28
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 拡張アンサンブル法による複雑系の計算機シミュレーション2016

    • Author(s)
      岡本祐幸
    • Organizer
      国際高等研究所 研究プロジェクト 「分子基盤に基づく生体機能ネットワークとダイナミクスの解明」第5回研究会
    • Place of Presentation
      木津川市、日本
    • Year and Date
      2016-02-18
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble algorithms and free energy calculations2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Symposium “Free Energy Landscape of Protein Folding and Dynamics by Simulations Based on Enhanced Conformational Sampling Algorithms”
    • Place of Presentation
      Nagoya, Japan
    • Year and Date
      2016-08-06
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms and free energy calculations2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Symposium “Free Energy Landscape of Protein Folding and Dynamics by Simulations Based on Enhanced Conformational Sampling Algorithms”
    • Place of Presentation
      Nagoya, Japan
    • Year and Date
      2016-08-06
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble simulations of complex systems2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      2016 NCTS March Workshop on Critical Phenomena and Complex Systems
    • Place of Presentation
      Hsinchu, Taiwan
    • Year and Date
      2016-03-28
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Protein dynamics studied by generalized-ensemble simulations2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 251st American Chemical Society National Meeting Symposium under the Computers in Chemistry (COMP) Division “30 Years of Protein Dynamics in Silico”
    • Place of Presentation
      San Diego, California, U.S.A.
    • Year and Date
      2016-03-13
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Protein dynamics studied by generalized-ensemble simulations2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 251st American Chemical Society National Meeting Symposium under the Computers in Chemistry (COMP) Division “30 Years of Protein Dynamics in Silico”
    • Place of Presentation
      San Diego, California, U.S.A.
    • Year and Date
      2016-03-13
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Energy landscape explored by generalized-ensemble algorithms2016

    • Author(s)
      Yuko Okamoto
    • Organizer
      Energy landscape explored by generalized-ensemble algorithms
    • Place of Presentation
      Porquerolles, France
    • Year and Date
      2016-06-27
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Enhanced sampling methods for classical and quantum molecular simulations2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 9th Korea-Japan Seminars on Biomolecular Sciences: Experiments and Simulations
    • Place of Presentation
      Gyeongju, Korea
    • Year and Date
      2016-11-14
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Energy landscape explored by generalized-ensemble algorithms2016

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Energy Landscapes: Theory and Applications (ELAND 2016)
    • Place of Presentation
      Porquerolles, France
    • Year and Date
      2016-06-27
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Introduction to Generalized-Ensemble MD Simulations Including the Replica-Exchange Umbrella Sampling (REUS) Method2016

    • Author(s)
      Yuko Okamoto
    • Organizer
      2-Day Mini Workshop: Approximate DFT Methods for Extended Systems
    • Place of Presentation
      Nagoya Univ.(Nagoya,Aichi, Japan)
    • Year and Date
      2016-06-20
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for calculations of ligand binding affinity2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      BIRS Workshop: Free-Energy Calculations. A Mathematical Perspective
    • Place of Presentation
      Oaxaca, Mexico
    • Year and Date
      2015-07-19
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 古典系および量子系の拡張アンサンブルシミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      スーパーコンピュータワークショップ
    • Place of Presentation
      岡崎市、日本
    • Year and Date
      2015-09-07
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] 拡張アンサンブル法による生体分子系のシミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      リトリート分子科学研究所研修 「分子科学の新世界:理論と実験のハーモニー」
    • Place of Presentation
      岡崎市、愛知県、日本
    • Year and Date
      2015-01-24
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble simulations of classical and quantum molecular systems2015

    • Author(s)
      Yuko Okamoto
    • Organizer
      The 6th Japan-Czech-Slovak International Symposium for Theoretical Chemistry
    • Place of Presentation
      Smolenice, Slovakia
    • Year and Date
      2015-10-11
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble simulations of classical and quantum molecular systems2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 6th Japan-Czech-Slovak International Symposium for Theoretical Chemistry
    • Place of Presentation
      Smolenice, Slovakia
    • Year and Date
      2015-10-11
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble simulations of classical and quantum molecular systems2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 6th Japan-Czech-Slovak International Symposium for Theoretical Chemistry
    • Place of Presentation
      Smolenice, Slovakia
    • Year and Date
      2015-10-11
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Efficient sampling methods for complex systems2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 19th International Annual Symposium on Computational Science and Engineering (ANSCSE19)
    • Place of Presentation
      Ubon Ratchathani, Thailand
    • Year and Date
      2015-06-17
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 拡張アンサンブル法による量子化学シミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      分子研研究会「理論計算分子科学ワークショップ」
    • Place of Presentation
      岡崎市、日本
    • Year and Date
      2015-10-22
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble simulations of complex systems2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      2015 NCTS International Workshop on Critical Phenomena and Complex Systems
    • Place of Presentation
      Hsinchu, Taiwan
    • Year and Date
      2015-08-15
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] 拡張アンサンブル法による量子化学シミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      分子研研究会「理論計算分子科学ワークショップ」
    • Place of Presentation
      岡崎市、日本
    • Year and Date
      2015-10-22
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble simulations2015

    • Author(s)
      Yuko Okamoto
    • Organizer
      Hands-on Workshop on Computational Biophysics at Okazaki
    • Place of Presentation
      岡崎コンファレンスセンター(愛知県岡崎市)
    • Year and Date
      2015-09-09
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble simulations of complex systems2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      2015 NCTS International Workshop on Critical Phenomena and Complex Systems
    • Place of Presentation
      Hsinchu, Taiwan
    • Year and Date
      2015-08-15
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms for enhanced sampling and free energy calculations2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Summer Snowmass Biophysics Workshop Free Energy Calculations: Three Decades of Adventure in Chemistry and Biophysics
    • Place of Presentation
      Snowmass, Colorado, U.S.A.
    • Year and Date
      2015-07-05
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] 拡張アンサンブル法による生体分子シミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      バイオスーパーコンピューティング名古屋2015
    • Place of Presentation
      名古屋市、愛知県、日本
    • Year and Date
      2015-01-22
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 拡張アンサンブル法による生体分子系のシミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      リトリート分子科学研究所研修 「分子科学の新世界:理論と実験のハーモニー」
    • Place of Presentation
      岡崎市、愛知県、日本
    • Year and Date
      2015-01-24
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms for calculations of ligand binding affinity2015

    • Author(s)
      Yuko Okamoto
    • Organizer
      BIRS Workshop: Free-Energy Calculations. A Mathematical Perspective
    • Place of Presentation
      Oaxaca, Mexico
    • Year and Date
      2015-07-19
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Efficient sampling methods for identifying transition states2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      TSRC Workshop on the Chemistry and Dynamics in Complex Environments (CHEM-DiCE)
    • Place of Presentation
      Telluride, Colorado, U.S.A.
    • Year and Date
      2015-06-23
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] 古典系および量子系の拡張アンサンブルシミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      スーパーコンピュータワークショップ
    • Place of Presentation
      岡崎コンファレンスセンター(愛知県岡崎市)
    • Year and Date
      2015-09-07
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for enhanced sampling and free energy calculations2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Summer Snowmass Biophysics Workshop Free Energy Calculations: Three Decades of Adventure in Chemistry and Biophysics
    • Place of Presentation
      Snowmass, Colorado, U.S.A.
    • Year and Date
      2015-07-05
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms for enhanced configurational sampling2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Algorithms in Structural Bioinformatics: Sampling in Biomacromolecular Systems (AlgoSB Winter School - 2015)
    • Place of Presentation
      Cargese, Corsica, France
    • Year and Date
      2015-11-29
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms for enhanced configurational sampling2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Algorithms in Structural Bioinformatics: Sampling in Biomacromolecular Systems (AlgoSB Winter School - 2015)
    • Place of Presentation
      Cargese, Corsica, France
    • Year and Date
      2015-11-29
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] 拡張アンサンブル法による量子化学シミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      分子研研究会「理論計算分子科学ワークショップ」
    • Place of Presentation
      岡崎コンファレンスセンター(愛知県岡崎市)
    • Year and Date
      2015-10-22
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for enhanced configurational sampling Algorithms in Structural Bioinformatics: Sampling in Biomacromolecular Systems2015

    • Author(s)
      Yuko Okamoto
    • Organizer
      AlgoSB Winter School - 2015
    • Place of Presentation
      Corsica, France
    • Year and Date
      2015-11-29
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble simulations of complex systems2015

    • Author(s)
      Yuko Okamoto
    • Organizer
      2015 NCTS International Workshop on Critical Phenomena and Complex Systems
    • Place of Presentation
      Hsinchu, Taiwan
    • Year and Date
      2015-08-15
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Efficient sampling methods for identifying transition states2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      TSRC Workshop on the Chemistry and Dynamics in Complex Environments (CHEM-DiCE)
    • Place of Presentation
      Telluride, Colorado, U.S.A.
    • Year and Date
      2015-06-23
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble simulations2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Hands-on Workshop on Computational Biophysics at Okazaki
    • Place of Presentation
      Okazaki, Japan
    • Year and Date
      2015-09-09
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 拡張アンサンブル法による生体分子シミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      バイオスーパーコンピューティング名古屋2015
    • Place of Presentation
      名古屋市、愛知県、日本
    • Year and Date
      2015-01-22
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Efficient sampling methods for complex systems2015

    • Author(s)
      Yuko Okamoto
    • Organizer
      The 19th International Annual Symposium on Computational Science and Engineering (ANSCSE19)
    • Place of Presentation
      Ubon Ratchathani, Thailand
    • Year and Date
      2015-06-17
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] 古典系および量子系の拡張アンサンブルシミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      スーパーコンピュータワークショップ
    • Place of Presentation
      岡崎市、日本
    • Year and Date
      2015-09-07
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms for calculations of ligand binding affinity2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      BIRS Workshop: Free-Energy Calculations. A Mathematical Perspective
    • Place of Presentation
      Oaxaca, Mexico
    • Year and Date
      2015-07-19
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Enhanced sampling methods for exascale computational chemistry2015

    • Author(s)
      Yuko Okamoto
    • Organizer
      PACIFICHEM 2015
    • Place of Presentation
      Honolulu, U.S.A.
    • Year and Date
      2015-12-15
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] 拡張アンサンブル法による生体分子シミュレーション2015

    • Author(s)
      岡本祐幸
    • Organizer
      バイオスーパーコンピューティング名古屋2015
    • Place of Presentation
      名古屋工業大学(愛知県名古屋市)
    • Year and Date
      2015-01-22
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Enhanced sampling methods for exascale computational chemistry2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 2015 International Chemical Congress of Pacific Basin Societies (PACIFICHEM2015)
    • Place of Presentation
      Honolulu, Hawaii, U.S.A.
    • Year and Date
      2015-12-15
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Efficient sampling methods for complex systems2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 19th International Annual Symposium on Computational Science and Engineering (ANSCSE19)
    • Place of Presentation
      Ubon Ratchathani, Thailand
    • Year and Date
      2015-06-17
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble algorithms for enhanced sampling and free energy calculations2015

    • Author(s)
      Yuko Okamoto
    • Organizer
      Summer Snowmass Biophysics Workshop Free Energy Calculations: Three Decades of Adventure in Chemistry and Biophysics
    • Place of Presentation
      Colorado U.S.A
    • Year and Date
      2015-07-05
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble simulations2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Hands-on Workshop on Computational Biophysics at Okazaki
    • Place of Presentation
      Okazaki, Japan
    • Year and Date
      2015-09-09
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Enhanced sampling methods for exascale computational chemistry2015

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 2015 International Chemical Congress of Pacific Basin Societies (PACIFICHEM2015)
    • Place of Presentation
      Honolulu, Hawaii, U.S.A.
    • Year and Date
      2015-12-15
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Efficient sampling methods for identifying transition states2015

    • Author(s)
      Yuko Okamoto
    • Organizer
      TSRC Workshop on the Chemistry and Dynamics in Complex Environments (CHEM-DiCE)
    • Place of Presentation
      Colorado U.S.A
    • Year and Date
      2015-06-23
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Reweighting techniques for Monte Carlo and molecular dynamics simulations2014

    • Author(s)
      岡本祐幸
    • Organizer
      The 13th KIAS Protein Folding Winter School
    • Place of Presentation
      High1Resort, Korea
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Enhanced sampling algorithms for biomolecular simulations2014

    • Author(s)
      岡本祐幸
    • Organizer
      International Workshop on Computational Biomolecular
    • Place of Presentation
      長野、日本
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Reweighting techniques for Monte Carlo and molecular dynamics simulations2014

    • Author(s)
      Yuko Okamoto
    • Organizer
      The 13th KIAS Protein Folding Winter School
    • Place of Presentation
      High 1 Resort, Korea
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Enhanced Sampling Techniques for Spin and Biomolecular Simulations2014

    • Author(s)
      岡本祐幸
    • Organizer
      RIKEN Theoretical Science Colloquium
    • Place of Presentation
      和光市、埼玉県、日本
    • Year and Date
      2014-09-16
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble simulations of biological molecular assembly and artificial molecular assembly2014

    • Author(s)
      Yuko Okamoto
    • Organizer
      The 2nd International Symposium "Dynamical ordering of biomolecular systems for creation of integrated functions
    • Place of Presentation
      キャンパスプラザ京都(京都府)
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Enhanced sampling algorithms for biomolecular simulations2014

    • Author(s)
      岡本祐幸
    • Organizer
      International Workshop on Computational Biomolecular
    • Place of Presentation
      おんたけ休暇村(長野県)
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Enhanced Sampling Techniques for Spin and Biomolecular Simulations2014

    • Author(s)
      岡本祐幸
    • Organizer
      RIKEN Theoretical Science Colloquium
    • Place of Presentation
      和光市、埼玉県、日本
    • Year and Date
      2014-09-16
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] レプリカ交換法によるタンパク質の立体構造2014

    • Author(s)
      岡本祐幸
    • Organizer
      HPCI第1回成果報告会
    • Place of Presentation
      東京、日本
    • Year and Date
      2014-10-31
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Enhanced Sampling Techniques for Spin and Biomolecular Simulations2014

    • Author(s)
      岡本祐幸
    • Organizer
      RIKEN Theoretical Science Colloquium
    • Place of Presentation
      理化学研究所(埼玉県和光市)
    • Year and Date
      2014-09-16
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble simulations of biological molecular assembly and artificial molecular aseembly2014

    • Author(s)
      岡本祐幸
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biological Systems for Creation of Integrated Functions
    • Place of Presentation
      京都、日本
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] レプリカ交換法によるタンパク質の立体構造2014

    • Author(s)
      岡本祐幸
    • Organizer
      HPCI第1回成果報告会
    • Place of Presentation
      東京、日本
    • Year and Date
      2014-10-31
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 拡張アンサンブル法による分子シミュレーション2014

    • Author(s)
      岡本祐幸
    • Organizer
      第3回産学連携シンポジウム「HPCの利用と成果と人材」
    • Place of Presentation
      名古屋、日本
    • Year and Date
      2014-01-31
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Enhanced-sampling simulations of spin and biological systems2013

    • Author(s)
      岡本祐幸
    • Organizer
      West-Lake International Workshop on Statistical Physics and Complex Systems
    • Place of Presentation
      Hangzhou, China
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Replica-exchange, simulated tempering, and multicanonical algorithms for simulations of complex systems2013

    • Author(s)
      Y. Okamoto
    • Organizer
      The 5th Korea-Japan Seminars on Biomolecular Sciences - Experiments and Simulations
    • Place of Presentation
      High 1 Resort, Korea
    • Year and Date
      2013-02-24
    • Invited
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Computer modeling of complex systems by generalized-ensemble simulations2013

    • Author(s)
      Yuko Okamoto
    • Organizer
      The 2013 Hong Kong Workshop in Computer Modeling of Complex Processes
    • Place of Presentation
      Hong Kong、China
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Computer modeling of complex systems by generalized-ensemble simulations2013

    • Author(s)
      岡本祐幸
    • Organizer
      The 2013 Hong Kong Workshop in Computer Modeling of Complex Processes
    • Place of Presentation
      Hong Kong
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble algorithms for molecular simulations2013

    • Author(s)
      Yuko Okamoto
    • Organizer
      The 3rd International Conference on Molecular Simulation (ICMS 2013)
    • Place of Presentation
      Kobe, Japan
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for first-principles electronic structure calculations2013

    • Author(s)
      岡本祐幸
    • Organizer
      16th Asian Workshop on First-Principles Electronic Structure Calculations (ASIAN-16)
    • Place of Presentation
      Beijing, China
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25104715
  • [Presentation] Generalized-ensemble algorithms for free energy calculations Free Energy Calculations2013

    • Author(s)
      Yuko Okamoto
    • Organizer
      Three Decades of Adventure in Chemistry and Biophysics
    • Place of Presentation
      Snowmass, Colorado, USA
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for free energy calculations2013

    • Author(s)
      岡本祐幸
    • Organizer
      Free Energy Calculations: Three Decades of Adventure in Chemistry and Biophysics
    • Place of Presentation
      Snowmass, Colorado, USA
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble simulations of spin and biological systems2013

    • Author(s)
      岡本祐幸
    • Organizer
      The 1st International Symposium on Computational Materials and Biological Sciences
    • Place of Presentation
      Tokyo, Japan
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25104715
  • [Presentation] Generalized-ensemble simulations for biological and spin systems2013

    • Author(s)
      岡本祐幸
    • Organizer
      Kavli Institute of Theoretical Physics Special Program on Advanced Molecular Simulation Methods in the Physical Sciences
    • Place of Presentation
      Beinjing, China
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25104715
  • [Presentation] 拡張アンサンブル法による生体分子の高次構造と機能の解明2013

    • Author(s)
      岡本祐幸
    • Organizer
      物性研スパコン共同利用・CMSI合同研究会(第4回CMSI研究会)
    • Place of Presentation
      東京大学柏キャンパス(千葉県)
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for molecular simulations2013

    • Author(s)
      岡本祐幸
    • Organizer
      The 3rd International Conference on Molecular Simulation (ICMS 2013)
    • Place of Presentation
      神戸、日本
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Simulational physics in generalized ensemble2013

    • Author(s)
      岡本祐幸
    • Organizer
      VII Brazilian Meeting on Simulational Physics
    • Place of Presentation
      Joao Pessoa, Brazil
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25104715
  • [Presentation] Enhanced-sampling simulations of spin and biological systems2013

    • Author(s)
      Yuko Okamoto
    • Organizer
      West-Lake International Workshop on Statistical Physics and Complex Systems
    • Place of Presentation
      Hangzhou, China
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for free energy calculations2013

    • Author(s)
      岡本祐幸
    • Organizer
      Free Energy Calculations: Three Decades of Adventure in Chemistry and Biophysics
    • Place of Presentation
      Snowmass, Colorado, USA
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25104715
  • [Presentation] Generalized-ensemble algorithms for first-principles electronic structure calculations2013

    • Author(s)
      岡本祐幸
    • Organizer
      16th Asian Workshop on First-Principles Electronic Structure Calculations(ASIAN-16)
    • Place of Presentation
      Beijing, China
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] 拡張アンサンブル密度汎関数分子動力学法によるATP加水分解の研究2013

    • Author(s)
      岡本祐幸
    • Organizer
      新学術領域研究「コンピューティクスによる物質デザイン:複合相関と非平衡ダイナミクス」平成25年度第1回研究会
    • Place of Presentation
      東京、日本
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble simulations of spin and biological systems2013

    • Author(s)
      岡本祐幸
    • Organizer
      The 1st International Symposium on Computational Materials and Biological Sciences
    • Place of Presentation
      東京、日本
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Multidimensional generalized-ensemble simulations of biological systems2013

    • Author(s)
      Y. Okamoto
    • Organizer
      International Symposium on Protein Folding and Its Biological Significance
    • Place of Presentation
      Okazaki, Japan
    • Year and Date
      2013-03-04
    • Invited
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations of spin and biological systems2013

    • Author(s)
      Yuko Okamoto
    • Organizer
      The 1st International Symposium on Computational Materials and Biological Sciences
    • Place of Presentation
      早稲田大学(東京都新宿区)
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for molecular simulations2013

    • Author(s)
      岡本祐幸
    • Organizer
      The 3rd International Conference on Molecular Simulation (ICMS 2013)
    • Place of Presentation
      Kobe, Japan
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25104715
  • [Presentation] 生体分子集団および人工分子集団の相互作用と大規模構造転換2013

    • Author(s)
      岡本祐幸
    • Organizer
      新学術領域研究「動的秩序と機能」第1回公開シンポジウム
    • Place of Presentation
      岡崎、日本
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Simulational physics in generalized ensemble2013

    • Author(s)
      岡本祐幸
    • Organizer
      VII Brazilian Meeting on Simulational Physics
    • Place of Presentation
      Joao Pessoa, Brazil
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Simulational physics in generalized ensemble2013

    • Author(s)
      Yuko Okamoto
    • Organizer
      VII Brazilian Meeting on Simulational Physics
    • Place of Presentation
      Joao Pessoa, Brazil
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] 生体分子集団および人工分子集団の相互作用と大規模構造転換2013

    • Author(s)
      岡本祐幸
    • Organizer
      新学術領域研究「動的秩序と機能」第1回公開シンポジウム
    • Place of Presentation
      岡崎、日本
    • Year and Date
      2013-10-02
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms for first-principles electronic structure calculations2013

    • Author(s)
      Yuko Okamoto
    • Organizer
      16th Asian Workshop on First-Principles Electronic Structure Calculations (ASIAN-16)
    • Place of Presentation
      Beijing, China
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] 拡張アンサンブル法による生体分子の高次構造と機能の解明2013

    • Author(s)
      岡本祐幸
    • Organizer
      物性研スパコン共同利用・CMSI合同研究会(第4回CMSI研究会)
    • Place of Presentation
      柏市、日本
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Replica-exchange, simulated tempering, and multicanonical algorithms for simulations of complex systems2013

    • Author(s)
      Y. Okamoto
    • Organizer
      The 5th Korea-Japan Seminars on Biomolecular Sciences
    • Place of Presentation
      Experiments and Simulations, High 1 Resort, Korea
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms for classical and quantum simulations2012

    • Author(s)
      Y. Okamoto
    • Organizer
      International Workshop on Recent Advances in Computational and Theoretical Chemistry
    • Place of Presentation
      Nagoya, Japan
    • Invited
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Multidimensional simulated tempering simulations of spin systems2012

    • Author(s)
      岡本祐幸
    • Organizer
      The 24th Annual Workshop of the Center of Simulational Physics : Recent Developments in Computer Simulation Studies in Condensed Matter Physics
    • Place of Presentation
      Athens, Georgia (USA)(招待講演)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms for classical and quantum simulations2012

    • Author(s)
      Y. Okamoto
    • Organizer
      International Workshop on Recent Advances in Computational and Theoretical Chemistry
    • Place of Presentation
      Nagoya, Japan
    • Year and Date
      2012-11-09
    • Data Source
      KAKENHI-ORGANIZER-20107001
  • [Presentation] Generalized-ensemble simulations in materials and biological sciences [plenary talk]2012

    • Author(s)
      Y. Okamoto
    • Organizer
      The 5th Japan-Russia International Workshop on Molecular Simulation Studies in Material and Biological Sciences (MSSMBS'12)
    • Place of Presentation
      Dubna-Moscow, Russia
    • Year and Date
      2012-09-09
    • Invited
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations in materials and biological sciences2012

    • Author(s)
      Y. Okamoto
    • Organizer
      [Plenary Talk] The 5th Japan-Russia International Workshop on Molecular Simulation Studies in Material and Biological Sciences (MSSMBS'12)
    • Place of Presentation
      Dubna-Moscow, Russia
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Development of Molecular Simulation Methods that Enhance Conformational Fluctuations of Biomolecules2012

    • Author(s)
      岡本祐幸
    • Organizer
      5th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      奈良(日本)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Greneralized-ensemble simulations for protein folding, unfolding, and ligand binding2012

    • Author(s)
      岡本祐幸
    • Organizer
      The 4th Japan-Korea Seminar on Biomolecular Sciences-Experiments and Simulations
    • Place of Presentation
      奈良(日本)(招待講演)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms for simulations of bionanomaterials2012

    • Author(s)
      Y. Okamoto
    • Organizer
      The 1st International Conference on Emerging Advanced Nanomaterials (ICEAN 2012)
    • Place of Presentation
      Brisbane, Australia
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Computational biophysics by generalized-ensemble algorithms2012

    • Author(s)
      Y. Okamoto
    • Organizer
      The 17th Biophysics Conference
    • Place of Presentation
      Taipei, Taiwan
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Molecular simulations in generalized ensemble2012

    • Author(s)
      Y. Okamoto
    • Organizer
      Professor N. Quirke 60th Birthday Symposium
    • Place of Presentation
      London, United Kingdom
    • Invited
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Structural fluctuations of proteins in folding, unfolding, and ligand docking studied by generalized-ensemble simulations2012

    • Author(s)
      Y. Okamoto
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      Kyoto, Japan
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 付加機能ソフト:REM(レプリカ交換法)2012

    • Author(s)
      岡本祐幸
    • Organizer
      文部科学省「最先端・高性能スーパーコンピュータの開発利用」プロジェクト次世代ナノ統合シミュレーションソフトウェアの研究開発第2回次世代ナノ統合シミュレーションソフトウェア説明会
    • Place of Presentation
      東京(日本)
    • Year and Date
      2012-01-26
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 特別支援課題:拡張アンサンブル法による生体分子の高次構造と機能の解明2012

    • Author(s)
      岡本祐幸
    • Organizer
      第2回CMSI研究会「新物質・エネルギー創成を目指して」
    • Place of Presentation
      仙台(日本)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] US-Japan Workshops on Computational Physics-International Liaison Activities2011

    • Author(s)
      Y.Okamoto
    • Organizer
      American Physical Society March Meeting 2011
    • Place of Presentation
      Dallas, Texas, USA
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Multidimensional generalized-ensemble algorithms for biomolecular simulations2011

    • Author(s)
      Y. Okamoto
    • Organizer
      The 3rd Korea-Japan Seminar on Biomolecular Sciences
    • Place of Presentation
      Experiments and Simulations, Jeju, Korea
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 185-Frypan sampling, a simple, knowledge-based improvement from umbrella sampling : Application to peptide folding2011

    • Author(s)
      Daniel J Sindhikara, Y.Okamoto
    • Organizer
      Fall 2011 National Meeting & Exposition
    • Place of Presentation
      Denver, Colorado, USA
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] レプリカ交換法を実現する付加機能ソフトREM2011

    • Author(s)
      岡本祐幸
    • Organizer
      文部科学省「最先端・高性能スーパーコンピュータの開発利用」プロジェクト 次世代ナノ統合シミュレーションソフトウェアの研究開発第5回公開シンポジウム
    • Place of Presentation
      神戸
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Quest for global minimizations : generalized-ensemble approach From Computational Biophysics to Systems Biology (CBSB11)2011

    • Author(s)
      岡本祐幸
    • Organizer
      Celebrating Harold Scheraga's Forthcoming 90th Birthday
    • Place of Presentation
      Juelich (Germany)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Computer simulations of biomolecular systems2011

    • Author(s)
      Y. Okamoto
    • Organizer
      The 7th Asian Biophysics Association (ABA) Symposium
    • Place of Presentation
      New Delhi, India
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms for protein aggregation and ligand binding2011

    • Author(s)
      Y. Okamoto
    • Organizer
      [Plenary Lecture] The 7th International Conference: Structure and Stability of Biomacromolecules (SSB2011)
    • Place of Presentation
      Kosice, Slovakia
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Computer simulations of biomolecular system2011

    • Author(s)
      Y.Okamoto
    • Organizer
      The 7th Asian Biophysics Association (ABA) Symposium
    • Place of Presentation
      New Delhi, India(招待)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Multidimensional generalized-ensemble algorithms for biomolecular simulations2011

    • Author(s)
      Y.Okamoto
    • Organizer
      The 3rd Korea-Japan Seminar on Biomolecular Sciences-Experiments and Simulations
    • Place of Presentation
      Jeju, Korea(招待)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] New coformational search method using genetic algorithm and knot theory for proteins2011

    • Author(s)
      Y.Sakae, T.Hiroyasu, M.Miki, Y.Okamoto
    • Organizer
      Pacific Symposium on Biocomputing 2011 (PSB2011), The Big Island of Hawaii, USA
    • Place of Presentation
      The Big Island of Hawaii, USA
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms for protein aggregation and ligand binding [Plenary Lecture]2011

    • Author(s)
      岡本祐幸
    • Organizer
      The 7th International Conference : Structure and Stability of Biomacromolecules (SSB 2011)
    • Place of Presentation
      Kosice (Slovakia)(招待講演)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms : powerful conformational sampling techniques for biomolecular simulations2011

    • Author(s)
      Y.Okamoto
    • Organizer
      Jawaharlal Nehru University International Conference, Biomolecular Simulation : Algorithm and Application
    • Place of Presentation
      New Delhi, India(招待)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 計算機シミュレーションによる生体分子科学研究2011

    • Author(s)
      岡本祐幸
    • Organizer
      岡崎統合バイオサイエンスセンター「10周年記念シンポジウム」
    • Place of Presentation
      岡崎(招待)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 構造ゆらぎを促進する分子シミュレーション手法の開発と自由エネルギー計算2011

    • Author(s)
      岡本祐幸
    • Organizer
      科研費新学術領域研究「揺らぎと生体機能」平成23年度合同班会議
    • Place of Presentation
      夕張(日本)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations of spin models and biomolecular systems2011

    • Author(s)
      岡本祐幸
    • Organizer
      12th International NTZ-Workshop on New Developments in Computational Physics (CompPhys11)
    • Place of Presentation
      Leipzig (Germany)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms: powerful conformational sampling techniques for biomolecular simulations2011

    • Author(s)
      Y. Okamoto
    • Organizer
      Jawaharlal Nehru University International Conference, Biomolecular Simulation: Algorithm and Application
    • Place of Presentation
      New Delhi, India
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Efficient conformational sampling techniques for biomolecular simulations2011

    • Author(s)
      Y.Okamoto
    • Organizer
      G-COE Symposium in Nagoya on Biochemistry and Biotechnology
    • Place of Presentation
      Nagoya, Japan(招待)
    • Year and Date
      2011-01-12
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] レプリカ交換法プログラム:REM2011

    • Author(s)
      岡本祐幸
    • Organizer
      スーパーコンピュータワークショップ2011「分子科学プログラムライブラリの充実にむけて」
    • Place of Presentation
      岡崎(招待)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations in protein science2010

    • Author(s)
      Y.Okamoto
    • Organizer
      The 4th Japan-Russia International Workshop on Molecular Simulation Studies in Material and Biological Sciences (MSSMBS'10)
    • Place of Presentation
      Dubna-Moscow, Russia(招待 Keynote Talk)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 分子シミュレーションによる分子内運動の計測2010

    • Author(s)
      岡本祐幸
    • Organizer
      真空・表面科学合同講演会
    • Place of Presentation
      吹田(招待)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations of protein folding2010

    • Author(s)
      Y.Okamoto
    • Organizer
      The 23rd Annual Workshop of the Center of Simulational Physics : Recent Developments in Computer Simulation Studies in Condensed Matter Physics, Athens
    • Place of Presentation
      Georgia, USA[Invited Talk]
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Folding and misfolding simulations of biomolecules2010

    • Author(s)
      Y. Okamoto
    • Organizer
      The 10th Taiwan International Symposium on Statistical Physics (StatPhys-Taiwan-2010)
    • Place of Presentation
      Taipei, Taiwan
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations in protein science2010

    • Author(s)
      Y. Okamoto
    • Organizer
      [Keynote Talk] The 4th Japan-Russia International Workshop on Molecular Simulation Studies in Material and Biological Sciences (MSSMBS'10)
    • Place of Presentation
      Dubna-Moscow, Russia
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms for multiscale biomolecular simulations2010

    • Author(s)
      Y.Okamoto
    • Organizer
      BioScience2010 Workshop on Expanding the Frontiers of Biomolecular Science
    • Place of Presentation
      Juelich, Germany(招待)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Nagoya University and Biophysics Research2010

    • Author(s)
      Y.Okamoto
    • Organizer
      International Symposium : Fifty Years of Biophysics Research at Nagoya University
    • Place of Presentation
      名古屋大学
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Molecular dynamics methods in generalized ensemble2010

    • Author(s)
      Y. Okamoto
    • Organizer
      The 239th American Chemical Society National Meeting
    • Place of Presentation
      San Francisco, California, U.S.A.
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] レプリカ交換法による膜蛋白質の立体構造予測2010

    • Author(s)
      岡本祐幸
    • Organizer
      次世代スパコンプロジェクト連続研究会「イオンチャネル(No.2)」
    • Place of Presentation
      福井
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations of protein folding (invited)2010

    • Author(s)
      Y.Okamoto
    • Organizer
      The 23rd Annual Workshop of the Center for Simulational Physics : Recent Developments in Computer Simulation Studies in Condensed Matter Physics
    • Place of Presentation
      Athens, Georgia, USA
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 構造揺らぎを促進する分子シミュレーション手法の開発と自由エネルギー計算2010

    • Author(s)
      岡本祐幸
    • Organizer
      新学術領域研究「揺らぎと生体機能」平成22年度合同班会議
    • Place of Presentation
      片山津
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Computer simulations of protein folding and misfolding2010

    • Author(s)
      岡本祐幸
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌(招待)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations of protein folding2010

    • Author(s)
      Y. Okamoto
    • Organizer
      The 23rd Annual Workshop of the Center of Simulational Physics: Recent Developments in Computer Simulations Studies in Condensed Matter Physics
    • Place of Presentation
      Athens, Georgia, U.S.A.
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Molecular dynamics methods in generalized ensemble (invited)2010

    • Author(s)
      Y.Okamoto
    • Organizer
      The 239th American Chemical Society National Meeting
    • Place of Presentation
      San Francisco, California, USA
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generallized-ensemble algorithms for modeling of biological macromolecules2010

    • Author(s)
      Y.Okamoto
    • Organizer
      The Pacific Symposium on Biocomputing 2010
    • Place of Presentation
      Big Island of Hawaii, USA
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations in protein science2010

    • Author(s)
      Y.Okamoto
    • Organizer
      The 4th Japan-Russia International Workshop on Molecular Simulation Studies in Material and Biological Sciences (MSSMBS'10)
    • Place of Presentation
      Dubna-Moscow, Russia[Invited Keynote Talk]
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Folding and misfolding simulations of biomolecules2010

    • Author(s)
      Y.Okamoto
    • Organizer
      The 10th Taiwan International Symposium on Statistical Physics (StatPhys-Taiwan-2010)
    • Place of Presentation
      Taipei, Taiwan(招待)
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms for multiscale biomolecular simulations2010

    • Author(s)
      Y. Okamoto
    • Organizer
      BioScience2010: Workshop on Expanding the Frontiers of Biomolecular Science
    • Place of Presentation
      Juelich, Germany
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Residual entropy of ordinary ice calculated from multicanonical Monte Carlo simulations2010

    • Author(s)
      Y.Okamoto, C.Muguruma, B.A.Berg
    • Organizer
      21st IUPAC International Conference on Chemical Thermodynamics ICCT-2010
    • Place of Presentation
      Tsukuba Japan
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Protein structure predictions by generalized-ensemble simulations2009

    • Author(s)
      Y. Okamoto
    • Organizer
      Zing Conference on Nanobiophysics, Nanochemistry, Nanomedicine and Nanotoxicology
    • Place of Presentation
      Antigua
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 揺らぎを誘起する拡張アンサンブル法によるタンパク質の折畳みシミュレーション(招待講演)2009

    • Author(s)
      岡本祐幸
    • Organizer
      第9回日本蛋白質科学会
    • Place of Presentation
      熊本
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 計算機シミュレーションによる蛋白質分子の立体構造予測(招待講演)2009

    • Author(s)
      岡本祐幸
    • Organizer
      分子研シンポジウム
    • Place of Presentation
      岡崎
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Protein folding simulations and optimization of potential energy functions for protein systems (invited)2009

    • Author(s)
      Y.Okamoto
    • Organizer
      第2回Road to Ab Initio Design of Materials and Bio-Artifacts研究会
    • Place of Presentation
      東京
    • Year and Date
      2009-06-25
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 拡張アンサンブル法によるナノシミュレーション~蛋白質分子の立体構造予測~(招待講演)2009

    • Author(s)
      岡本祐幸
    • Organizer
      日本材料学会分子動力学部門委員会・北陸信越支部合同研究会「ナノスケール現象のその場観察~顕微鏡と原子シミュレーションの役割~」
    • Place of Presentation
      金沢大学
    • Year and Date
      2009-07-03
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations of water and biomolecules (invited)2009

    • Author(s)
      Y. Okamoto
    • Organizer
      The 6^<th> Open Workshop of the Scientific Reseach in Priority Areas : Water and Biomolecules
    • Place of Presentation
      Okazaki, Japan
    • Year and Date
      2009-03-16
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations of bionanostructures (invited)2009

    • Author(s)
      Y.Okamoto
    • Organizer
      The 238th American Chemical Society National Meeting
    • Place of Presentation
      Washington, D.C., USA
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations of biomolecular systems (invited)2009

    • Author(s)
      Y Okamoto
    • Organizer
      Korea-Japan Seminars on Biomolecular Sciences-Experiments and Simulations
    • Place of Presentation
      Seoul, Korea
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms for protein structure predictions [Keynote Talk] (invited)2009

    • Author(s)
      Y.SaKae, Y.Okamoto
    • Organizer
      2009 International Conference on Computational & Experimental Engineering and Sciences
    • Place of Presentation
      Phuket, Thailand
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations in biomolecular science (invited)2009

    • Author(s)
      Y.Okamoto
    • Organizer
      The 2nd Japan-Korea Seminars on Biomolecular Sciences-Experiments and Simulations
    • Place of Presentation
      名古屋
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms for protein structure predictions2009

    • Author(s)
      Y.Okamoto
    • Organizer
      2009 International Conference on Computational, &, Experimental Engineering and Sciences, ICCES'09
    • Place of Presentation
      Phuket, Thailand[Invited Keynote Talk]
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations of biomolecular systems2009

    • Author(s)
      Y. Okamoto
    • Organizer
      Korea-Japan Seminars on Biomolecular Sciences. Experiments and Simulations
    • Place of Presentation
      Seoul, Korea
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble algorithms for protein structure predictions2009

    • Author(s)
      Y. Okamoto
    • Organizer
      [Keynote Talk] 2009 International Conference on Computational & Experimental Engineering and Sciences, ICCES'09
    • Place of Presentation
      Phuket, Thailand
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 拡張アンサンブル法で探るタンパク質のフォールディングとミスフォールディング(招待講演)2009

    • Author(s)
      伊藤暁、岡本祐幸
    • Organizer
      大阪大学蛋白質研究所セミナー「蛋白質立体構造を基盤とするプリオン現象の解明と制御」
    • Place of Presentation
      大阪大学、吹田
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Protein structure predictions by generalized-ensemble simulations (invited)2009

    • Author(s)
      Y. Okamoto
    • Organizer
      Zing Conference on Nanobiophysics, Nanochemistry, Nanomedicine and Nanotoxicology
    • Place of Presentation
      Antigua
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Generalized-ensemble simulations of bionanostructures2009

    • Author(s)
      Y. Okamoto
    • Organizer
      The 238th American Chemical Society National Meeting
    • Place of Presentation
      Washington, D.C., U.S.A.
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] 拡張アンサンブル法:状態空間の効率的なサンプリング(招待講演)2009

    • Author(s)
      岡本祐幸
    • Organizer
      分野横断型研究会「アルゴリズムによる計算科学の融合と発展」
    • Place of Presentation
      筑波大学計算科学研究センター、つくば
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Molecular Simulations by Generalized-Ensemble Algorithms2009

    • Author(s)
      Y.Okamoto
    • Organizer
      International Symposiumm on "Reaction Dynamics of Many-Body Chemical Systems" (RDMCS2009)
    • Place of Presentation
      京都大学
    • Data Source
      KAKENHI-PLANNED-20107002
  • [Presentation] Computer simulationsof spin systems arid biomolecular systems in Geberalized ensembles2008

    • Author(s)
      Y. Okamoto
    • Organizer
      The 9^<th> Taiwan Inter. Symp. on Statistical Physics (Statphys-Taiwan-2008)
    • Place of Presentation
      Taipei, Taiwan(invited)
    • Data Source
      KAKENHI-PROJECT-20038025
  • [Presentation] Generalized-ensemble algorithms for protein folding and misfolding2008

    • Author(s)
      Y. Okamoto
    • Organizer
      The 8th KIAS-Yonsei Conf. on Protein Structure and Function
    • Place of Presentation
      Seoul, Korea(invited)
    • Data Source
      KAKENHI-PROJECT-20038025
  • [Presentation] Replica-exchange method and its generalizations2008

    • Author(s)
      Y. Okamoto
    • Organizer
      The 235^<th> American Chem. Soc Nat. Meeting Symp. Under the Computers in Chemistry
    • Place of Presentation
      New Orleans, Luisiana, U.S.A(COMP) (invited)
    • Data Source
      KAKENHI-PROJECT-20038025
  • [Presentation] Generalized-ensemble algorithms for simulations in molecular Nanoscience2008

    • Author(s)
      Y. Okamoto
    • Organizer
      The 1^<st> Inter. Conf. of The Grand Challenge to Next-Generation Integrated nanscience
    • Place of Presentation
      Tokyo, Japan(invited)
    • Data Source
      KAKENHI-PROJECT-20038025
  • [Presentation] Protein folding simulations in generalized ensembles2007

    • Author(s)
      Y. Okamoto(招待講演)
    • Organizer
      Mainz Materials Simulation Days 2007 (MMSD 2007)
    • Place of Presentation
      Mainz, Germany
    • Data Source
      KAKENHI-PROJECT-15076213
  • [Presentation] Enhanced configurational sampling methods for spin systems and biomolecular systems

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      XXVI IUPAP Conference on Computational Physics, CCP2014
    • Place of Presentation
      Boston, Massachusetts, USA
    • Year and Date
      2014-08-11 – 2014-08-14
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] 拡張アンサンブル法による分子シミュレーション

    • Author(s)
      岡本祐幸
    • Organizer
      第3回産学連携シンポジウム「HPCの利用と成果と人材」
    • Place of Presentation
      名古屋大学(愛知県)
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Simulational physics in generalized ensemble

    • Author(s)
      岡本祐幸
    • Organizer
      VII Brazilian Meeting on Simulational Physics
    • Place of Presentation
      Joao Pessoa, Brazil
    • Year and Date
      2013-08-06 – 2013-08-10
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 分子シミュレーションにおける拡張アンサンブル法

    • Author(s)
      岡本祐幸
    • Organizer
      第8回分子シミュレーションスクール -基礎から応用までー
    • Place of Presentation
      岡崎コンファレンスセンター(愛知県岡崎市)
    • Year and Date
      2014-10-14 – 2014-10-17
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Computer simulations of protein folding, ligand binding, and proton transfer

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      2nd International Conference on Computational Science and Engineering (2nd ICCSE 2014)
    • Place of Presentation
      Ho Chi Minh City, Vietnam
    • Year and Date
      2014-08-21 – 2014-08-23
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] 生体分子集団および人工分子集団の相互作用と大規模構造転換

    • Author(s)
      岡本 祐幸
    • Organizer
      生命システムにおける動的秩序形成と高次機能発現 第1回公開シンポジウム
    • Place of Presentation
      岡崎コンファレンスセンター(愛知県)
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Computer modeling of complex systems by generalized-ensemble simulations

    • Author(s)
      岡本祐幸
    • Organizer
      The 2013 Hong Kong Workshop in Computer Modeling of Complex Processes
    • Place of Presentation
      Hong Kong
    • Year and Date
      2013-12-17 – 2013-12-20
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Drug design by generalized-ensemble simulations

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 6th Japan-Russia International Workshop onMolecular Simulation Studies in Material and Biological Sciences (MSSMBS-2014)
    • Place of Presentation
      Moscow, Russia
    • Year and Date
      2014-09-21 – 2014-09-22
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Enhanced sampling techniques for spin and biological systems

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 10th AIMS Conference on Dynamical Systems, Differential Equations and Applications
    • Place of Presentation
      Madrid, Spain
    • Year and Date
      2014-07-07 – 2014-07-11
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] 拡張アンサンブル法による生体分子の立体構造予測

    • Author(s)
      岡本祐幸
    • Organizer
      TCCI第5回研究会
    • Place of Presentation
      岡崎市、愛知県、日本
    • Year and Date
      2014-10-17 – 2014-10-18
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble simulations of biological molecular assembly and artificial molecular aseembly

    • Author(s)
      岡本祐幸
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biological Systems for Creation of Integrated Functions
    • Place of Presentation
      京都、日本
    • Year and Date
      2014-01-11 – 2014-01-12
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Interactions among biological molecular assembly and among artificial molecular assebly and large-scale structural transformations

    • Author(s)
      岡本祐幸
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷、志摩市、三重県、日本
    • Year and Date
      2015-01-10 – 2015-01-11
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 生体分子集団の相互作用と自由エネルギー計算

    • Author(s)
      岡本祐幸
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜市、神奈川県、日本
    • Year and Date
      2014-06-25 – 2014-06-27
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 拡張アンサンブル密度汎関数分子動力学法によるATP加水分解の研究

    • Author(s)
      岡本祐幸
    • Organizer
      新学術領域研究「コンピューティクスによる物質デザイン:複合相関と非平衡ダイナミクス」平成25年度第1回研究会
    • Place of Presentation
      東京、日本
    • Year and Date
      2013-07-08 – 2013-07-09
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Reweighting techniques for Monte Carlo and molecular dynamics simulations

    • Author(s)
      岡本祐幸
    • Organizer
      The 13th KIAS Protein Folding Winter School
    • Place of Presentation
      High1Resort, Korea
    • Year and Date
      2014-01-19 – 2014-01-24
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Generalized-ensemble algorithms for free energy calculations

    • Author(s)
      岡本祐幸
    • Organizer
      Free Energy Calculations: Three Decades of Adventure in Chemistry and Biophysics
    • Place of Presentation
      Snowmass, Colorado, USA
    • Year and Date
      2013-07-15 – 2013-07-19
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Drug design by generalized-ensemble simulations

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 6th Japan-Russia International Workshop onMolecular Simulation Studies in Material and Biological Sciences (MSSMBS-2014)
    • Place of Presentation
      Moscow, Russia
    • Year and Date
      2014-09-21 – 2014-09-22
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Protein folding and ligand binding simulations by generaized-ensemble algorithms [Invited Talk]

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 7th Korea-Japan Seminars on Biomolecular Sciences: Experiments and Simulations
    • Place of Presentation
      Seoul 、Korea
    • Year and Date
      2014-11-26 – 2014-11-28
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble simulations of spin and biological systems

    • Author(s)
      岡本祐幸
    • Organizer
      The 1st International Symposium on Computational Materials and Biological Sciences
    • Place of Presentation
      東京、日本
    • Year and Date
      2013-09-10 – 2013-09-12
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Enhanced-sampling simulations of spin and biological systems

    • Author(s)
      岡本祐幸
    • Organizer
      West-Lake International Workshop on Statistical Physics and Complex Systems
    • Place of Presentation
      Hangzhou, China
    • Year and Date
      2013-11-08 – 2013-11-10
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Computer simulations of protein folding, ligand binding, and proton transfer

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      2nd International Conference on Computational Science and Engineering (2nd ICCSE 2014)
    • Place of Presentation
      Ho Chi Minh City, Vietnam
    • Year and Date
      2014-08-21 – 2014-08-23
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Enhanced sampling techniques for spin and biological systems

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 10th AIMS Conference on Dynamical Systems, Differential Equations and Applications Special Session “Enhanced Sampling Techniques in Simulation of Complex Systems”
    • Place of Presentation
      Madrid, Spain
    • Year and Date
      2014-07-07 – 2014-07-11
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 生体分子集団および人工分子集団の相互作用と大規模構造転換

    • Author(s)
      岡本祐幸
    • Organizer
      新学術領域研究「動的秩序と機能」全体班会議
    • Place of Presentation
      小松市、石川県、日本
    • Year and Date
      2014-08-04 – 2014-08-07
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Protein folding and ligand binding simulations by generaized-ensemble algorithms

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 7th Korea-Japan Seminars on Biomolecular Sciences &#8211; Experiments and Simulations
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2014-11-26 – 2014-11-28
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Lecture 1: An introduction to replica-exchange molecular dynamics simulation Lecture 2: Generalized-ensemble algorithms

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 11th Thai Summer School of Computational Chemistry 2015 Workshop: Replica Exchange Molecular Dynamics Simulation
    • Place of Presentation
      Nan, Thailand
    • Year and Date
      2015-01-04 – 2015-01-07
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 拡張アンサンブル法による生体分子の立体構造予測

    • Author(s)
      岡本祐幸
    • Organizer
      TCCI第5回研究会
    • Place of Presentation
      岡崎市、愛知県、日本
    • Year and Date
      2014-10-17 – 2014-10-18
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Protein folding and ligand binding simulations by generaized-ensemble algorithms

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 7th Korea-Japan Seminars on Biomolecular Sciences &#8211; Experiments and Simulations
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2014-11-26 – 2014-11-28
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Enhanced sampling techniques for spin and biological systems

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 10th AIMS Conference on Dynamical Systems, Differential Equations and Applications Special Session “Enhanced Sampling Techniques in Simulation of Complex Systems”
    • Place of Presentation
      Madrid, Spain
    • Year and Date
      2014-07-07 – 2014-07-11
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] 分子シミュレーションにおける拡張アンサンブル法

    • Author(s)
      岡本祐幸
    • Organizer
      第8回分子シミュレーションスクール -基礎から応用までー
    • Place of Presentation
      岡崎市、愛知県、日本
    • Year and Date
      2014-10-14 – 2014-10-17
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] 分子シミュレーションにおける拡張アンサンブル法

    • Author(s)
      岡本祐幸
    • Organizer
      第8回分子シミュレーションスクール -基礎から応用までー
    • Place of Presentation
      岡崎市、愛知県、日本
    • Year and Date
      2014-10-14 – 2014-10-17
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] An introduction to replica-exchange molecular dynamics simulation

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 11th Thai Summer School of Computational Chemistry 2015 Workshop: Replica Exchange Molecular Dynamics Simulation
    • Place of Presentation
      Nan, Thailand
    • Year and Date
      2015-01-04 – 2015-01-07
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Enhanced sampling algorithms for biomolecular simulations

    • Author(s)
      岡本祐幸
    • Organizer
      International Workshop on Computational Biomolecular
    • Place of Presentation
      長野、日本
    • Year and Date
      2014-03-31 – 2014-04-01
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 生体分子集団の相互作用と自由エネルギー計算

    • Author(s)
      岡本祐幸
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜市、神奈川県、日本
    • Year and Date
      2014-06-25 – 2014-06-27
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble algorithms for molecular simulations

    • Author(s)
      岡本祐幸
    • Organizer
      The 3rd International Conference on Molecular Simulation (ICMS 2013)
    • Place of Presentation
      神戸市、日本
    • Year and Date
      2013-11-18 – 2013-11-20
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Enhanced configurational sampling methods for spin systems and biomolecular systems

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      XXVI IUPAP Conference on Computational Physics, CCP2014
    • Place of Presentation
      Boston, Massachusetts, USA
    • Year and Date
      2014-08-11 – 2014-08-14
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Generalized-ensemble algorithms for first-principles electronic structure calculations

    • Author(s)
      岡本祐幸
    • Organizer
      16th Asian Workshop on First-Principles Electronic Structure Calculations (ASIAN-16)
    • Place of Presentation
      Beijing, China
    • Year and Date
      2013-10-27 – 2013-10-30
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 拡張アンサンブル法による生体分子の高次構造と機能の解明

    • Author(s)
      岡本祐幸
    • Organizer
      物性研スパコン共同利用・CMSI合同研究会(第4回CMSI研究会)
    • Place of Presentation
      柏市、日本
    • Year and Date
      2013-12-11 – 2013-12-13
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Invitation to serve as a Discussion Leader and present the following talk:“Generalized-ensemble algorithms for simulations of spin and bimolecular systems”

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 28th Annual Workshop of the Center of Simulational Physics: Recent Developments in Computer Simulation Studies in Condensed Matter Physics
    • Place of Presentation
      Athens, Georgia, U.S.A.
    • Year and Date
      2015-02-23 – 2015-02-27
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Computer simulations of protein folding, ligand binding, and proton transfer

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      2nd International Conference on Computational Science and Engineering (2nd ICCSE 2014)
    • Place of Presentation
      Ho Chi Minh City, Vietnam
    • Year and Date
      2014-08-21 – 2014-08-23
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Protein folding and unfolding simulations by generalized-ensemble algorithms

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Dushanbe Symposium on Computational Materials and Biological Sciences (DSCMBS-2014)
    • Place of Presentation
      Dushanbe, Tajikistan
    • Year and Date
      2014-09-23 – 2014-09-28
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Generalized-ensemble algorithms for simulations of spin and bimolecular systems

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 28th Annual Workshop of the Center of Simulational Physics: Recent Developments in Computer Simulation Studies in Condensed Matter Physics
    • Place of Presentation
      Athens, Georgia, U.S.A.
    • Year and Date
      2015-02-23 – 2015-02-27
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 生体分子集団および人工分子集団の相互作用と大規模構造転換

    • Author(s)
      岡本祐幸
    • Organizer
      新学術領域研究「動的秩序と機能」全体班会議
    • Place of Presentation
      小松市、石川県、日本
    • Year and Date
      2014-08-04 – 2014-08-07
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Enhanced configurational sampling methods for spin systems and biomolecular systems

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      XXVI IUPAP Conference on Computational Physics, CCP2014
    • Place of Presentation
      Boston, Massachusetts, USA
    • Year and Date
      2014-08-11 – 2014-08-14
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] 拡張アンサンブル法による分子シミュレーション

    • Author(s)
      岡本祐幸
    • Organizer
      第3回産学連携シンポジウム「HPCの利用と成果と人材」
    • Place of Presentation
      名古屋、日本
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Drug design by generalized-ensemble simulations

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 6th Japan-Russia International Workshop onMolecular Simulation Studies in Material and Biological Sciences (MSSMBS-2014)
    • Place of Presentation
      Moscow, Russia
    • Year and Date
      2014-09-21 – 2014-09-22
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • [Presentation] Protein folding and unfolding simulations by generalized-ensemble algorithms

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Dushanbe Symposium on Computational Materials and Biological Sciences (DSCMBS-2014)
    • Place of Presentation
      Dushanbe, Tajikistan
    • Year and Date
      2014-09-23 – 2014-09-28
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Interactions among biological molecular assembly and among artificial molecular assebly and large-scale structural transformations

    • Author(s)
      岡本祐幸
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷、志摩市、三重県、日本
    • Year and Date
      2015-01-10 – 2015-01-11
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] Protein folding and unfolding simulations by generalized-ensemble algorithms

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      Dushanbe Symposium on Computational Materials and Biological Sciences (DSCMBS-2014)
    • Place of Presentation
      Dushanbe, Tajikistan
    • Year and Date
      2014-09-23 – 2014-09-28
    • Invited
    • Data Source
      KAKENHI-PROJECT-25247071
  • [Presentation] Lecture 1: An introduction to replica-exchange molecular dynamics simulation Lecture 2: Generalized-ensemble algorithms

    • Author(s)
      Yuko OKAMOTO
    • Organizer
      The 11th Thai Summer School of Computational Chemistry 2015 Workshop: Replica Exchange Molecular Dynamics Simulation
    • Place of Presentation
      Nan, Thailand
    • Year and Date
      2015-01-04 – 2015-01-07
    • Invited
    • Data Source
      KAKENHI-PLANNED-25102009
  • [Presentation] 生体分子集団の相互作用と自由エネルギー計算

    • Author(s)
      岡本祐幸
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜(神奈川県横浜市)
    • Year and Date
      2014-06-25 – 2014-06-27
    • Invited
    • Data Source
      KAKENHI-ORGANIZER-25102001
  • 1.  TERAZIMA Masahide (00188674)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 1 results
  • 2.  KATO Koichi (20211849)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 8 results
  • 3.  HOHSAKA Takahiro (30263619)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 1 results
  • 4.  中沢 隆 (30175492)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 5.  平岡 秀一 (10322538)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 6.  稲垣 直之 (20223216)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 7.  上久保 裕生 (20311128)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 8.  佐藤 宗太 (40401129)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 5 results
  • 9.  佐藤 啓文 (70290905)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 5 results
  • 10.  KATAOKA Mikio (30150254)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 11.  UEOKA Ryuichi (70099076)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 12.  HIRATA Fumio (90218785)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 13.  KUWAJIMA Kunihiro (70091444)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 14.  YAMATO Takahisa (90251587)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 15.  MITSUTAKE Ayori (00338253)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 16.  ADACHI Shinichi (60260220)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 17.  奥村 久士 (80360337)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 12 results
  • 18.  YAMAGUCHI Takumi
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 19.  SATO Tadashi
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 20.  YAGI Hirokazu
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 21.  YAGI Maho
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 22.  鈴木 孝禎
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 23.  田中 啓二
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 24.  谷中 冴子
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 25.  依田 隆夫
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 26.  田村 康
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 27.  小島 理恵子
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 28.  遠藤 斗志也
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 29.  IRLE Stephan
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 30.  森 義治
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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