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Luscombe Nicholas M.  LUSCOMBE Nicholas・M.

ORCIDConnect your ORCID iD *help
… Alternative Names

ラスカム ニコラス  ラスカム ニコラス

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Researcher Number 70724087
Affiliation (Current) 2025: 沖縄科学技術大学院大学, ゲノム・遺伝子制御システム科学ユニット, 教授
Affiliation (based on the past Project Information) *help 2018 – 2024: 沖縄科学技術大学院大学, ゲノム・遺伝子制御システム科学ユニット, 教授
Review Section/Research Field
Principal Investigator
Basic Section 64040:Social-ecological systems-related / Basic Section 43050:Genome biology-related / System genome science
Keywords
Principal Investigator
marine biology / bioinformatics / genomics / plankton / climate change / Plankton / Marine biology / Climate change / Genomics / Bioinformatics … More / evolution / ecology / functional genomics / Oikopleura / zooplankton / DROSOPHILA MELANOGASTER / SYSTEMS BIOLOGY / STATISTICAL MODELLING / GENE REGULATION Less
  • Research Projects

    (3 results)
  • Research Products

    (12 results)
  • Co-Researchers

    (4 People)
  •  Adaptation of marine zooplankton to climate change conditions: a multi-omic study of molecular mechanisms.Principal Investigator

    • Principal Investigator
      ラスカム ニコラス
    • Project Period (FY)
      2022 – 2024
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 64040:Social-ecological systems-related
    • Research Institution
      Okinawa Institute of Science and Technology Graduate University
  •  ユビキタス海洋動物プランクトン、ワカレオタマボヤの集団ゲノム科学Principal Investigator

    • Principal Investigator
      ラスカム ニコラス
    • Project Period (FY)
      2020 – 2021
    • Research Category
      Grant-in-Aid for JSPS Fellows
    • Review Section
      Basic Section 43050:Genome biology-related
    • Research Institution
      Okinawa Institute of Science and Technology Graduate University
  •  黄色猩々蝿のTALEモジュレーションを利用した転写因子群の二機能性に関する研究Principal Investigator

    • Principal Investigator
      ラスカム ニコラス
    • Project Period (FY)
      2018 – 2019
    • Research Category
      Grant-in-Aid for JSPS Fellows
    • Research Field
      System genome science
    • Research Institution
      Okinawa Institute of Science and Technology Graduate University

All 2024 2023 2022 2021

All Journal Article Presentation

  • [Journal Article] Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species.2024

    • Author(s)
      Plessy, C., Mansfield, M.J., Bliznina, A., Masunaga, A., West, C., Tan, Y., Liu, A.W., Grasic, J., Del Rio Pisula, M.S., Sanchez-Serna, G., Fabrega-Torrus, M., Ferrandez-Roldan, A., Roncalli, V., Navratilova, P., Thompson, E.M., Onuma, T., Nishida, H., Canestro, C., Luscombe, N.M.
    • Journal Title

      Genome Research

      Volume: in press Pages: 426-440

    • DOI

      10.1101/gr.278295.123

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H03234, KAKENHI-PLANNED-20H05946, KAKENHI-PROJECT-23K25049
  • [Journal Article] Clipplotr-a comparative visualization and analysis tool for CLIP data2023

    • Author(s)
      Anob M Chakrabarti, Charlotte Capitanchik, Jernej Ule, Nicholas M Luscombe
    • Journal Title

      RNA

      Volume: 29 Pages: 715-723

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K25049
  • [Journal Article] RNA polymerase II-associated proteins reveal pathways affected in VCP-related amyotrophic lateral sclerosis2023

    • Author(s)
      Mahmoud-Reza Rafiee, Sara Rohban, Karen Davey, Jernej Ule, Nicholas M Luscombe
    • Journal Title

      OXFORD Academic BRAIN

      Volume: 146 Issue: 6 Pages: 2547-2556

    • DOI

      10.1093/brain/awad046

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K25049
  • [Journal Article] A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 32023

    • Author(s)
      Anob M Chakrabarti, Ira A Iosub, Flora CY Lee, Jernej Ule, Nicholas M Luscombe
    • Journal Title

      OXFORD University Press

      Volume: 51 Issue: 8 Pages: 3573-3589

    • DOI

      10.1093/nar/gkad221

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K25049
  • [Journal Article] Nf-core/clipseq - a robust Nextflow pipeline for comprehensive CLIP data analysis2023

    • Author(s)
      Charlotte West, Charlotte Capitanchik, Chris Cheshire, Nicholas M Luscombe, Anob Chakrabarti, Jernej Ule
    • Journal Title

      Wellcome Open Research

      Volume: 8 Pages: 286-286

    • DOI

      10.12688/wellcomeopenres.19453.1

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K25049
  • [Journal Article] Poised PABP-RNA hubs implement signal-dependent mRNA decay in development2023

    • Author(s)
      Jernej Ule, Miha Modic, Klara Kuret, Sebastian Steinhauser, Rupert Faraway, Emiel van Genderen, Flora Lee, Igor Ruiz de Los Mozos, Ziga Vicic, Jona Novljan, Derk ten Berge, Nicholas Luscombe
    • Journal Title

      Research Gate

      Volume: -

    • DOI

      10.21203/rs.3.rs-3227673/v1

    • Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K25049
  • [Journal Article] Flow: a web platform and open database to analyse, store, curate and share bioinformatics data at scale2023

    • Author(s)
      Charlotte Capitanchik, Sam Ireland, Alex Harston, Chris Cheshire, D Marc Jones, Flora CY Lee, Igor Ruiz de los Mozos, Ira A Iosub, Klara Kuret, Rupert Faraway, Oscar G Wilkins, Rahul Arora, Martina Hallegger, Miha Modic, Anob M Chakrabarti, Nicholas M Luscombe, Jernej Ule
    • Journal Title

      bioRxiv, Cold Spring Harbor Lab

      Volume: -

    • DOI

      10.1101/2023.08.22.544179

    • Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K25049
  • [Journal Article] scRNA-sequencing in chick suggests a probabilistic model for cell fate allocation at the neural plate border2023

    • Author(s)
      Alexandre P Thiery, Ailin Leticia Buzzi, Eva Hamrud, Chris Cheshire, Nicholas M Luscombe, James Briscoe, Andrea Streit
    • Journal Title

      Elife Sciences Publications Limited

      Volume: 12

    • DOI

      10.7554/elife.82717

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K25049
  • [Journal Article] The cosmopolitan appendicularian Oikopleura dioica reveals hidden genetic diversity around the globe.2022

    • Author(s)
      Masunaga A, Mansfield MJ, Tan Y, Liu AW, Bliznina A, Barzaghi P, Hodgetts TL, Ferrandez‐Roldan A, Canestro C, Onuma TA, Plessy C and Luscombe NM
    • Journal Title

      Marine Biology

      Volume: 169 Issue: 12

    • DOI

      10.1007/s00227-022-04145-5

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-20H05946, KAKENHI-PROJECT-23K25049
  • [Journal Article] Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing2021

    • Author(s)
      Aleksandra Bliznina, Aki Masunaga, Michael J. Mansfield, Yongkai Tan, Andrew W. Liu, Charlotte West, Tanmay Rustagi, Hsiao-Chiao Chien, Saurabh Kumar, Julien Pichon, Charles Plessy & Nicholas M. Luscombe
    • Journal Title

      BMC genomics

      Volume: 22 Issue: 1 Pages: 1-18

    • DOI

      10.1186/s12864-021-07512-6

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20F20760
  • [Presentation] Genomic scramble in marine plankton2024

    • Author(s)
      Nicholas M. Luscombe
    • Organizer
      OIST x Kyudai Joint Symposium Series 1
    • Data Source
      KAKENHI-PROJECT-23K25049
  • [Presentation] Molecular clock estimation of divergence times in populations of Oikopleura dioica2022

    • Author(s)
      Michael Mansfield and the Luscombe Lab
    • Organizer
      OIST-Tohoku Marine Science Workshop
    • Data Source
      KAKENHI-PROJECT-20F20760
  • 1.  CHEN ZHE
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 2.  MANSFIELD MICHAEL
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 4 results
  • 3.  ONUMA Takeshi
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 4.  西田 宏記
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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