Tsuyuzaki Kouki 露崎弘毅

… Alternative Names

Tsuyuzaki Koki 露崎弘毅

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Researcher Number	70769520
Other IDs
Affiliation (Current)	2025: 千葉大学, 大学院医学研究院, 特任講師
Affiliation (based on the past Project Information) *help	2023 – 2024: 千葉大学, 大学院医学研究院, 特任講師 2020 – 2022: 国立研究開発法人理化学研究所, 生命機能科学研究センター, 基礎科学特別研究員 2018 – 2019: 国立研究開発法人理化学研究所, 生命機能科学研究センター, 特別研究員 2016 – 2017: 国立研究開発法人理化学研究所, 情報基盤センター, 特別研究員
Review Section/Research Field	Principal Investigator Basic Section 62010:Life, health and medical informatics-related / Life / Health / Medical informatics Except Principal Investigator Medium-sized Section 43:Biology at molecular to cellular levels, and related fields / Basic Section 45020:Evolutionary biology-related / Basic Section 43060:System genome science-related
Keywords	Principal Investigator 次元圧縮 / 機械学習 / バイオインフォマティクス / オミックス / 1細胞RNA-Seq / 情報検索 / シングルセルオミックス / エピゲノム / 創薬 / AI創薬 … More / 機能アノテーション / オーファン受容体 / オミックス解析 / 逆薬理学 / 脱オーファン化 / テンソル分解 / 細胞型 / 教師あり学習 / 次世代シーケンサー / single-cell RNA-Seq / 生命情報学 … More Except Principal Investigator インフォマティクス / 細胞系譜解析 / 質量分析 / メタボローム / 神経 / 形態形成 / Evo-Devo / Evo-devo / 消化管 / 統合オミクス / 再解析 / 質量分析データ / メタボロミクス Less

A public data reanalysis environment in metabolomics
- Principal Investigator
  
  津川裕司
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Tokyo University of Agriculture and Technology
Understanding cell metabolism lineages by developing metabolomics and its informatics techniques
- Principal Investigator
  
  津川裕司
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Challenging Research (Pioneering)
- Review Section
  
  Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
- Research Institution
  Tokyo University of Agriculture and Technology
Establishment of Cell-type Deconvolution Method in Bulk Epigenome DataPrincipal Investigator
- Principal Investigator
  
  露崎弘毅
- Project Period (FY)
  2023 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Chiba University
貫通した消化管の起源をウニ幼生から探る
- Principal Investigator
  
  谷口俊介
- Project Period (FY)
  2022 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 45020:Evolutionary biology-related
- Research Institution
  University of Tsukuba
Identification and functional elucidation of orphan receptor binding ligands using non-negative tensor decompositionPrincipal Investigator
- Principal Investigator
  
  Tsuyuzaki Koki
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Institute of Physical and Chemical Research
Establishment of the analysis method to identify cell type contained in single-cell RNA sequencing dataPrincipal Investigator
- Principal Investigator
  
  Tsuyuzaki Koki
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Institute of Physical and Chemical Research

All 2023 2022 2021 2020 2019 2017

All Journal Article Presentation Book

[Book] RNA-Seqデータ解析 WETラボのための鉄板レシピ（実験医学別冊）, 「リファレンスゲノムにマッピングしない方法～salmon，kallisto，tximport & RNA-Seq定量にまつわるFAQ」2019
- Author(s)
  露崎弘毅
- Total Pages
  255
- Publisher
  羊土社
- ISBN
  9784758122436
- Data Source
  KAKENHI-PROJECT-19K20406
[Journal Article] Sctensor detects many-to-many cell-cell interactions from single cell RNA-sequencing data2023
- Author(s)
  Tsuyuzaki Koki、Ishii Manabu、Nikaido Itoshi
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 24 Issue: 1 Pages: 420-420
- DOI
  10.1186/s12859-023-05490-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K11312, KAKENHI-PLANNED-21H05245
[Journal Article] nnTensor: An R package for non-negative matrix/tensordecomposition2023
- Author(s)
  Tsuyuzaki Koki、Nikaido Itoshi
- Journal Title
  
  Journal of Open Source Software
  
  Volume: 8 Issue: 84 Pages: 5015-5015
- DOI
  10.21105/joss.05015
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K11312, KAKENHI-PLANNED-21H05245
[Journal Article] dcTensor: An R package for discrete matrix/tensordecomposition2023
- Author(s)
  Tsuyuzaki Koki
- Journal Title
  
  Journal of Open Source Software
  
  Volume: 8 Issue: 88 Pages: 5664-5664
- DOI
  10.21105/joss.05664
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K11312
[Journal Article] iTensor: An R package for independent componentanalysis-based matrix/tensor decomposition2023
- Author(s)
  Tsuyuzaki Koki
- Journal Title
  
  Journal of Open Source Software
  
  Volume: 8 Issue: 87 Pages: 5496-5496
- DOI
  10.21105/joss.05496
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K11312
[Journal Article] WormTensor: a clustering method for time-series whole-brain activity data from C. elegans2023
- Author(s)
  Tsuyuzaki, K., Yamamoto, K., Toyoshima, Y., Sato, H., Kanamori, M., Teramoto, T., Ishihara, T., Iino, Y., and Nikaido, I.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 24 Issue: 1 Pages: 254-254
- DOI
  10.1186/s12859-023-05230-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K18149, KAKENHI-PROJECT-21K15182, KAKENHI-PROJECT-23K05958, KAKENHI-PROJECT-23K11312, KAKENHI-PROJECT-20K21805, KAKENHI-PUBLICLY-22H04838, KAKENHI-PLANNED-21H05245
[Journal Article] WormTensor: a clustering method for time-series whole-brain activity data from C. elegans2023
- Author(s)
  Koki Tsuyuzaki, Kentaro Yamamoto, Yu Toyoshima, Hirofumi Sato, Manami Kanamori, Takayuki Teramoto, Takeshi Ishihara, Yuichi Iino, Itoshi Nikaido
- Journal Title
  
  BMC Bioinformatics (Accepted)
  
  Volume: 未定
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K20406
[Journal Article] Non-negative tensor factorization workflow for time series biomedical data2023
- Author(s)
  Tsuyuzaki Koki、Yoshida Naoki、Ishikawa Tetsuo、Goshima Yuki、Kawakami Eiryo
- Journal Title
  
  STAR Protocols
  
  Volume: 4 Issue: 3 Pages: 102318-102318
- DOI
  10.1016/j.xpro.2023.102318
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21837, KAKENHI-PROJECT-21K02356, KAKENHI-PROJECT-23K11312
[Journal Article] Mathematics for Heterogeneous Biological Data Fusion Analysis with Matrix-Tensor Factorization2022
- Author(s)
  露崎弘毅
- Journal Title
  
  JSBi Bioinformatics Review
  
  Volume: 3 Issue: 1 Pages: 20-33
- DOI
  10.11234/jsbibr.2022.1
- ISSN
  2435-7022
- Language
  Japanese
- Data Source
  KAKENHI-PROJECT-19K20406
[Journal Article] Detecting time-evolving phenotypic components of adverse reactions against BNT162b2 SARS-CoV-2 vaccine via non-negative tensor factorization2022
- Author(s)
  Ikeda Kei、Nakada Taka-Aki、Kageyama Takahiro、Tanaka Shigeru、Yoshida Naoki、Ishikawa Tetsuo、Goshima Yuki、Otaki Natsuko、Iwami Shingo、Shimamura Teppei、Taniguchi Toshibumi、Igari Hidetoshi、Hanaoka Hideki、Yokote Koutaro、Tsuyuzaki Koki、Nakajima Hiroshi、Kawakami Eiryo
- Journal Title
  
  iScience
  
  Volume: 25 Issue: 10 Pages: 105237-105237
- DOI
  10.1016/j.isci.2022.105237
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21837, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PROJECT-19K20406, KAKENHI-PUBLICLY-22H04839
[Journal Article] Mathematics for Heterogeneous Biological Data Fusion Analysis with Matrix-Tensor Factorization2021
- Author(s)
  露崎弘毅
- Journal Title
  
  JSBi Bioinformatics Review
  
  Volume: 2 Issue: 1 Pages: 15-29
- DOI
  10.11234/jsbibr.2021.6
- NAID
  130008101616
- ISSN
  2435-7022
- Language
  Japanese
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K20406
[Journal Article] Improved MeSH analysis software tools for farm animals2021
- Author(s)
  Amorim Sabrina T.、Tsuyuzaki Koki、Nikaido Itoshi、Morota Gota
- Journal Title
  
  Animal Genetics
  
  Volume: 53 Issue: 1 Pages: 171-172
- DOI
  10.1111/age.13159
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05245, KAKENHI-PROJECT-19K20406
[Journal Article] OnlinePCA.jl: an ultrafast and memory-efficient incremental principal component analysis for million-level single cell RNA-sequencing2020
- Author(s)
  Koki Tsuyuzaki, Hiroyuki Sato, Kenta Sato and Itoshi Nikaido
- Journal Title
  
  BMC Genome Biology
  
  Volume: 21 (12) Issue: 1 Pages: 0-0
- DOI
  10.1186/s13059-019-1900-3
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K20406
[Journal Article] CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing2019
- Author(s)
  Kenta Sato, Koki Tsuyuzaki, Kentaro Shimizu, and Itoshi Nikaido
- Journal Title
  
  BMC Genome Biology
  
  Volume: 20(31) Issue: 1 Pages: 0-0
- DOI
  10.1186/s13059-019-1639-x
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K16152, KAKENHI-PROJECT-19K20406
[Journal Article] A NMF based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq2019
- Author(s)
  Hirotaka Matsumoto, Tetsutaro Hayashi, Haruka Ozaki, Koki Tsuyuzaki, Mana Umeda, Tsuyoshi Iida, Masaya Nakamura, Hideyuki Okano, and Itoshi Nikaido
- Journal Title
  
  NAR Genomics and Bioinformatics
  
  Volume: 2 (1) Issue: 1
- DOI
  10.1093/nargab/lqz020
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] オープニング2023
- Author(s)
  露崎弘毅
- Organizer
  IIBMP2023 LLMワークショップ
- Data Source
  KAKENHI-PROJECT-23K11312
[Presentation] 君たちはどう生きるか？2023
- Author(s)
  露崎弘毅
- Organizer
  IIBMP2023 ナイトセッション
- Invited
- Data Source
  KAKENHI-PROJECT-23K11312
[Presentation] 生命科学にパラダイムシフトを起こすテンソル分解技術2022
- Author(s)
  露崎弘毅
- Organizer
  IPSJ-ONE
- Invited
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] Guidelines to handle large-scale and complex tensor data in R2021
- Author(s)
  露崎弘毅
- Organizer
  BioC Asia 2021
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] OSSを用いた1細胞オミックスデータ解析の現状と課題2021
- Author(s)
  露崎弘毅
- Organizer
  第420回CBI学会講演会
- Invited
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] 細胞間相互作用解析ワークショップ2021
- Author(s)
  露崎弘毅
- Organizer
  BioC Asia 2021
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] 大規模オミックスデータのためのテンソル分解の高速化2021
- Author(s)
  露崎弘毅
- Organizer
  IPR Seminar
- Invited
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] 事例紹介: Snakemake2021
- Author(s)
  露崎弘毅
- Organizer
  2021年日本バイオインフォマティクス学会年会・第10回生命医薬情報学連合大会（IIBMP2021）
- Invited
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] Opening Remark2021
- Author(s)
  露崎弘毅
- Organizer
  BioC Asia 2021
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] 多様な多次元データ構造を扱うテンソルパッケージの紹介2021
- Author(s)
  露崎弘毅
- Organizer
  第44回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] Benchmarking principal component analysis for large-scale single-cell RNA-sequencing2020
- Author(s)
  Koki Tsuyuzaki, Hiroyuki Sato, Kenta Sato, Itoshi Nikaido
- Organizer
  IIBMP2020 2020年9月1日
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] Tensor Decomposition: A Versatile Method for Heterogeneous Biological Data Fusion2020
- Author(s)
  Koki Tsuyuzaki
- Organizer
  BioC Asia 2020
- Invited
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] 行列・テンソル分解を用いた異種バイオデータ統合解析の数理2020
- Author(s)
  露崎弘毅
- Organizer
  情報処理学会第64回バイオ情報学研究会/東北大学電気通信研究所第35回生体生命工学研究会
- Invited
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] イントロダクション: テンソルとしてのバイオデータ2019
- Author(s)
  露崎弘毅
- Organizer
  第42回分子生物学会年会
- Data Source
  KAKENHI-PROJECT-19K20406
[Presentation] いかにして「使える」データベースを維持し続けるか2017
- Author(s)
  露崎弘毅
- Organizer
  2017年度生命科学系学会合同年次大会
- Invited
- Data Source
  KAKENHI-PROJECT-16K16152

1. 津川裕司 (30647235)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
2. 谷口俊介 (00505331)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 宮本潤基 (20805668)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. GO Yasuhiro

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
5. 石川哲朗

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
6. 二階堂愛

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
7. 飯野雄一

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Tsuyuzaki Kouki 露崎 弘毅

Tsuyuzaki Koki 露崎 弘毅

Research Projects

Research Products

Co-Researchers

A public data reanalysis environment in metabolomics

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Understanding cell metabolism lineages by developing metabolomics and its informatics techniques

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Establishment of Cell-type Deconvolution Method in Bulk Epigenome DataPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

貫通した消化管の起源をウニ幼生から探る

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Identification and functional elucidation of orphan receptor binding ligands using non-negative tensor decompositionPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Establishment of the analysis method to identify cell type contained in single-cell RNA sequencing dataPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] RNA-Seqデータ解析 WETラボのための鉄板レシピ（実験医学別冊）, 「リファレンスゲノムにマッピングしない方法～salmon，kallisto，tximport & RNA-Seq定量にまつわるFAQ」2019

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Journal Article] Sctensor detects many-to-many cell-cell interactions from single cell RNA-sequencing data2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] nnTensor: An R package for non-negative matrix/tensordecomposition2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] dcTensor: An R package for discrete matrix/tensordecomposition2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] iTensor: An R package for independent componentanalysis-based matrix/tensor decomposition2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] WormTensor: a clustering method for time-series whole-brain activity data from C. elegans2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] WormTensor: a clustering method for time-series whole-brain activity data from C. elegans2023

Author(s)

Journal Title

Data Source

[Journal Article] Non-negative tensor factorization workflow for time series biomedical data2023

Author(s)

Journal Title

DOI

Tsuyuzaki Kouki 露崎弘毅

Tsuyuzaki Koki 露崎弘毅