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Brandani Giovanni Bruno  Brandani Giovanni

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… Alternative Names

Brandani Giovanni  ブランダーニ ジョバンニ

BRANDANI Giovanni  Brandani Giovanni

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Researcher Number 70869073
Affiliation (Current) 2025: 京都大学, 理学研究科, 講師
Affiliation (based on the past Project Information) *help 2025: 京都大学, 理学研究科, 講師
2020 – 2022: 京都大学, 理学研究科, 特定講師
Review Section/Research Field
Principal Investigator
Basic Section 43040:Biophysics-related
Keywords
Principal Investigator
simulation / chromosome / all-atom / MD simulation / chromatin remodeling / molecular dynamics / nucleosome / twist defects / string method / all-atom MD simulation / nucleosome sliding
  • Research Projects

    (2 results)
  • Research Products

    (6 results)
  •  Decoding the Multi-Dimensional Remodeling of Chromatin: Bridging 1D Nucleosome Positioning to 3D Chromatin OrganizationPrincipal Investigator

    • Principal Investigator
      Brandani Giovanni
    • Project Period (FY)
      2025 – 2029
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 43040:Biophysics-related
    • Research Institution
      Kyoto University
  •  Characterizing the mechanism of chromatin remodeling by molecular dynamics simulationsPrincipal Investigator

    • Principal Investigator
      BRANDANI Giovanni
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 43040:Biophysics-related
    • Research Institution
      Kyoto University

All 2022 2021 2020

All Journal Article Presentation

  • [Journal Article] Molecular dynamics simulations for the study of chromatin biology.2022

    • Author(s)
      G.B. Brandani, S. Gopi, M. Yamauchi, S. Takada
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 77 Pages: 102485-102485

    • DOI

      10.1016/j.sbi.2022.102485

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06587, KAKENHI-PLANNED-20H05934, KAKENHI-PROJECT-21H02441
  • [Presentation] Elucidation of nucleosome sliding mechanism in all-atom detail via MD simulations2022

    • Author(s)
      Syed Hashim Shah, Giovanni Bruno Brandani, Shoji Takada
    • Organizer
      The 60th Annual Meeting of the Biophysical Society of Japan
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06587
  • [Presentation] Bayesian inference of chromatin folding from Hi-C data and application to enhancer-promoter communication in the Nanog locus2022

    • Author(s)
      Giovanni Bruno Brandani, Chenyang Gu, Soundhara Rajan Gopi, Shoji Takada
    • Organizer
      The 60th Annual Meeting of the Biophysical Society of Japan
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06587
  • [Presentation] Elucidation of nucleosome sliding mechanism in all-atom detail via MD simulations2021

    • Author(s)
      Syed Hashim Shah, Giovanni Brandani, Shoji Takada
    • Organizer
      The 59th Annual Meeting of the Biophysical Society of Japan
    • Data Source
      KAKENHI-PROJECT-20K06587
  • [Presentation] A metainference approach to modeling the 3d structure of chromatin from Hi-C data2021

    • Author(s)
      Giovanni Brandani, Chenyang Gu, Shoji Takada
    • Organizer
      The 59th Annual Meeting of the Biophysical Society of Japan
    • Data Source
      KAKENHI-PROJECT-20K06587
  • [Presentation] Remodelers Exploit Spontaneous Nucleosome Fluctuations to Reorganize Chromatin2020

    • Author(s)
      Giovanni Brandani, Shoji Takada
    • Organizer
      The 58th Annual Meeting of the Biophysical Society of Japan
    • Data Source
      KAKENHI-PROJECT-20K06587

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