Maruyama Yutaka 丸山豊

Researcher Number	80390665
Other IDs
Affiliation (Current)	2025: 明治大学, 研究・知財戦略機構, 研究推進員(客員研究員)
Affiliation (based on the past Project Information) *help	2020 – 2024: 明治大学, 研究・知財戦略機構, 研究推進員(客員研究員)
Review Section/Research Field	Except Principal Investigator Basic Section 43040:Biophysics-related
Keywords	Except Principal Investigator ペプチド / 環状ペプチド / 3D-RISM / 蛋白質 / 膜蛋白質 / 溶媒効果 / 安定性 / フォールディング / 化学物理 / タンパク質 … More / 計算物理学 / 計算化学 / 生体高分子 / 生物物理学 / 分子シミュレーション Less

Estimation of stability and functional changes due to amino acid substitution using molecular simulations
- Principal Investigator
  
  光武亜代理
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Meiji University

All 2023 2022 2021 2020

All Journal Article Presentation

[Journal Article] Effect of Main and Side Chains on the Folding Mechanism of the Trp-Cage Miniprotein2023
- Author(s)
  Maruyama Yutaka、Mitsutake Ayori
- Journal Title
  
  ACS Omega
  
  Volume: 8 Issue: 46 Pages: 43827-43835
- DOI
  10.1021/acsomega.3c05809
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-22H04756, KAKENHI-PROJECT-23K20301
[Journal Article] Analysis of Protein Folding Simulation with Moving Root Mean Square Deviation2023
- Author(s)
  Y. Maruyama, R. Igarashi, Y. Ushiku, A. Mitsutake
- Journal Title
  
  J. Chem. Inf. Model.
  
  Volume: 63 Issue: 5 Pages: 1529-1541
- DOI
  10.1021/acs.jcim.2c01444
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-22H04756, KAKENHI-PROJECT-23K20301
[Journal Article] Computational Analysis of the SARS-CoV-2 RBD?ACE2-Binding Process Based on MD and the 3D-RISM Theory2022
- Author(s)
  Yoshida Norio、Maruyama Yutaka、Mitsutake Ayori、Kuroda Akiyoshi、Fujiki Ryo、Kanemaru Kodai、Okamoto Daisuke、Kobryn Alexander E.、Gusarov Sergey、Nakano Haruyuki
- Journal Title
  
  Journal of Chemical Information and Modeling
  
  Volume: 62 Issue: 11 Pages: 2889-2898
- DOI
  10.1021/acs.jcim.2c00192
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K04980, KAKENHI-PUBLICLY-22H04756, KAKENHI-PROJECT-23K20301
[Journal Article] Structural Stability Analysis of Proteins Using End-to-End Distance: A 3D-RISM Approach2022
- Author(s)
  Yutaka Maruyama and Ayori Mitsutake
- Journal Title
  
  J
  
  Volume: J Issue: 1 Pages: 114-125
- DOI
  10.3390/j5010009
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K20301
[Journal Article] Mutation-induced change in chignolin stability from pi-turn to alpha-turn2020
- Author(s)
  Yutaka Maruyama, Shunpei Koroku, Misaki Imai, Koh Takeuchi, Ayori Mitsutake
- Journal Title
  
  RSC Advances
  
  Volume: 10 Issue: 38 Pages: 22797-22808
- DOI
  10.1039/d0ra01148g
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K20301
[Presentation] Analysis on Protein Folding Simulations with Relaxation Mode Analysis and 3D-RISM Theory2023
- Author(s)
  Yutaka Maruyama and Ayori Mitsutake（発表者）
- Organizer
  The 21st KIAS Conference on Protein Structure and Function,2023,2023,1,1
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K20301
[Presentation] MD と 3D-RISM 理論による SARS-CoV-2 スパイク蛋白質と ACE2 タンパク質間相互作用の研究2022
- Author(s)
  Yutaka Maruyama, Ayori Mitsutake, Norio Yoshida
- Organizer
  日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-23K20301
[Presentation] NMRを用いたシニョリンとその変異体の立体構造解析2021
- Author(s)
  小六隼平, 今井美咲, 丸山豊, 竹内恒, 光武亜代理
- Organizer
  分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-23K20301
[Presentation] Structure analysis of chignolin and its mutants by NMR2021
- Author(s)
  S. Koroku, M. Imai, Y. Maruyama K. Takeuchi, A. Mitsutake
- Organizer
  生物物理学会年会
- Data Source
  KAKENHI-PROJECT-23K20301
[Presentation] NMR解析を用いたシニョリンとその変異体の立体構造の決定2020
- Author(s)
  小六隼平, 丸山豊, 今井美咲, 竹内恒, 光武亜代理
- Organizer
  分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-23K20301
[Presentation] Analysis of simulation data of 18-residue thioether-bonded cyclic peptides P6 and P72020
- Author(s)
  S. Koroku, A. Mitsutake, Y. Maruyama, K. Takeuchi
- Organizer
  日本生物物理学会
- Data Source
  KAKENHI-PROJECT-23K20301

1. 光武亜代理 (00338253)

# of Collaborated Projects: 1 results

# of Collaborated Products: 10 results
2. 中野晴之

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Maruyama Yutaka 丸山 豊

Research Projects

Research Products

Co-Researchers

Estimation of stability and functional changes due to amino acid substitution using molecular simulations

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Effect of Main and Side Chains on the Folding Mechanism of the Trp-Cage Miniprotein2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Analysis of Protein Folding Simulation with Moving Root Mean Square Deviation2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Computational Analysis of the SARS-CoV-2 RBD?ACE2-Binding Process Based on MD and the 3D-RISM Theory2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Structural Stability Analysis of Proteins Using End-to-End Distance: A 3D-RISM Approach2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Mutation-induced change in chignolin stability from pi-turn to alpha-turn2020

Author(s)

Journal Title

DOI

Data Source

[Presentation] Analysis on Protein Folding Simulations with Relaxation Mode Analysis and 3D-RISM Theory2023

Author(s)

Organizer

Data Source

[Presentation] MD と 3D-RISM 理論による SARS-CoV-2 スパイク蛋白質と ACE2 タンパク質間相互作用の研究2022

Author(s)

Organizer

Data Source

[Presentation] NMRを用いたシニョリンとその変異体の立体構造解析2021

Author(s)

Organizer

Data Source

[Presentation] Structure analysis of chignolin and its mutants by NMR2021

Author(s)

Organizer

Data Source

[Presentation] NMR解析を用いたシニョリンとその変異体の立体構造の決定2020

Author(s)

Organizer

Data Source

[Presentation] Analysis of simulation data of 18-residue thioether-bonded cyclic peptides P6 and P72020

Author(s)

Organizer

Data Source

Maruyama Yutaka 丸山豊