Ota Yoshihiro 大田佳宏

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OHTA Yoshihiro 大田佳宏

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Researcher Number	80436592
Affiliation (Current)	2025: 東京大学, 大学院数理科学研究科, 客員教授
Affiliation (based on the past Project Information) *help	2016 – 2017: 東京大学, 大学院数理科学研究科, 特任教授 2014 – 2015: 東京大学, 数理(科)学研究科(研究院), 特任教授 2013: 東京大学, 数理(科)学研究科(研究院), 特任准教授 2011 – 2012: 東京大学, 先端科学技術研究センター, 特任助教 2010 – 2012: 東京大学, 先端科学技術研究センター, 特任研究員 2007 – 2008: 東京大学, 先端科学技術研究センター, 特任研究員 2007: The University of Tokyo, 先端科学技術研究センター, リサーチフェロー
Review Section/Research Field	Principal Investigator Bioinformatics/Life informatics / Life / Health / Medical informatics Except Principal Investigator System genome science / Genome biology / Living organism molecular science / Applied genomics
Keywords	Principal Investigator シミュレーション / 転写 / 超離散系 / 遺伝子 / セルオートマトン / 時空間解析 / ダイナミクス / 時空間 / 位相幾何学 / 数理モデル … More / 離散系 / 遺伝子転写 / 配列解析 / 超離散 / バイオインフォマティクス / RNA / RNAPII / ネットワーク / パスウェイ / テキストマイニング / シグネチャ / ハブ遺伝子 / シグネチャパスウェイ / シグネチャ解析 / マルチプルエッジ … More Except Principal Investigator ヒストン修飾 / プロテオミクス / シミュレーション / ゲノム科学 / 散逸構造 / 転写過程 / モデル化 / RNAポリメレース / エピゲノム / 炎症 / RNAポリメレースII / 転写 / 内皮細胞 / TNFα / RNA ポリメレース / モノクローナル抗体 / RNAプロセッシング / 核タンパク質 / 軟X線顕微鏡 / 核内受容体 / 軟Ｘ線顕微鏡 / 生体イメージング / 核微細構造 / クロマチン修飾 / 核小体 / 核スペックル / 細胞周期 / 転写調節 / スプライシング / 複合体解析 / 膜タンパク質複合体 / 転写複合体 / リン酸化 Less

Elucidation of gene transcription of single cell by fusion of topology and ultradiscretizationPrincipal Investigator
- Principal Investigator
  
  Ohta Yoshihiro
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  The University of Tokyo
Ultra-discrete model and ChIP-Seq analysis for gene transcriptionPrincipal Investigator
- Principal Investigator
  
  OHTA Yoshihiro
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
A study of thermodynamics and Information processing in the transcription factory
- Principal Investigator
  
  IHARA Sigeo
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  System genome science
- Research Institution
  The University of Tokyo
Analysis of transcription factory and epigenomic modification in inflammatory stimulation driven transcription wave
- Principal Investigator
  
  WADA Youichiro
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Genome biology
- Research Institution
  The University of Tokyo
High density simulation for transcriptional dynamicsPrincipal Investigator
- Principal Investigator
  
  OHTA Yoshihiro
- Project Period (FY)
  2010 – 2011
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
Dynamic Proteomics of Transcriptional and Nuclear Architecture
- Principal Investigator
  
  HAMAKUBO Takao
- Project Period (FY)
  2008 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Research Field
  
  Living organism molecular science
- Research Institution
  The University of Tokyo
Analysis of phosphorylation signaling pathways
- Principal Investigator
  
  IHARA Sigeo
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied genomics
- Research Institution
  The University of Tokyo
Dynamic Pathway Prediction by Signature Analysisusing Multiple EdgePrincipal Investigator
- Principal Investigator
  
  OHTA Yoshihiro
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Young Scientists (Start-up)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo

All 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 Other

All Journal Article Presentation

[Journal Article] Direct Evidence for Pitavastatin Induced Chromatin Structure Change in the KLF4 Gene in Endothelial Cells.2014
- Author(s)
  Maejima T, Inoue T, Kanki Y, Kohro T, Li G, Ohta Y, Kimura H, Kobayashi M, Taguchi A, Tsutsumi S, Iwanari H, Yamamoto S, Aruga H, Dong S, Stevens JF, Poh HM, Yamamoto K, Kawamura T, Mimura I,
- Journal Title
  
  PLoS One.
  
  Volume: 9 Issue: 5 Pages: e96005-e96005
- DOI
  10.1371/journal.pone.0096005
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-12J08634, KAKENHI-PROJECT-22229009, KAKENHI-PROJECT-24500360, KAKENHI-PLANNED-25116005, KAKENHI-PUBLICLY-25118505, KAKENHI-PUBLICLY-25125707, KAKENHI-PROJECT-25670035, KAKENHI-PROJECT-25670619, KAKENHI-PROJECT-26250041, KAKENHI-PROJECT-26290035, KAKENHI-PROJECT-26430121, KAKENHI-PROJECT-26560395, KAKENHI-PROJECT-26640069, KAKENHI-PROJECT-26670397, KAKENHI-PROJECT-26710013, KAKENHI-PROJECT-26860627, KAKENHI-PUBLICLY-26116708
[Journal Article] 真核生物の転写機構の数理解析2014
- Author(s)
  井原茂男, 大田佳宏
- Journal Title
  
  「生体の科学」(医学書院)
  
  Volume: Vol.65, No.5 Pages: 458-459
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-24500360
[Journal Article] 遺伝子転写機構の時空間シミュレーション2014
- Author(s)
  大田佳宏, 井原茂男
- Journal Title
  
  「生体の科学」(医学書院)
  
  Volume: Vol.65, No.5 Pages: 458-459
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-24500360
[Journal Article] Ultradiscrete Modeling and Simulation for Gene Transcription2013
- Author(s)
  Ohta Y and Ihara S
- Journal Title
  
  RIMS Kokyuroku Bessatsu
  
  Volume: 未定
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24500360
[Journal Article] Ultradiscrete Modeling and Simulation for Gene Transcription2013
- Author(s)
  Yoshihiro Ohta and Sigeo Ihara
- Journal Title
  
  Publications of the Research Institute for Mathematical Sciences
  
  Volume: in press
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23651201
[Journal Article] Ultradiscrete Modeling and Simulation for Gene Transcription2013
- Author(s)
  Yoshihiro Ohta and Sigeo Ihara
- Journal Title
  
  RIMS Kokyuroku Bessatsu
  
  Volume: B41 Pages: 101-124
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24500360
[Journal Article] A path preference cellular-automaton model for traffic flow through transit points and its application to the transcription process in biology2012
- Author(s)
  Yoshihiro Ohta, Akinobu Nishiyama, Yoichiro Wada, Yijun Ruan, Tatsuhiko Kodama, Takashi Tsuboi, Tetsuji Tokihiro and Sigeo Ihara
- Journal Title
  
  Phys. Rev. E
  
  Volume: 86 Issue: 2 Pages: 021918-021918
- DOI
  10.1103/physreve.86.021918
- URL
  http://link.aps.org/doi/10.1103/PhysRevE.86.021918
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21340034, KAKENHI-PROJECT-22310117, KAKENHI-PROJECT-23540071, KAKENHI-PROJECT-23651201, KAKENHI-PROJECT-24224002, KAKENHI-PROJECT-24500360
[Journal Article] Path-preference cellular-automaton model for traffic flow through transit points and its application to the transcription process in human cells.2012
- Author(s)
  Ohta Y, Nishiyama A, Wada Y, Ruan Y, Kodama T, Tsuboi T, Tokihiro T, Ihara S.
- Journal Title
  
  Phys Rev E Stat Nonlin Soft Matter Phys
  
  Volume: 86 Pages: 21918-21918
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22310117
[Journal Article] Cellular-automaton model of the cooperative dynamics of RNA polymerase II during transcription in human cells.2011
- Author(s)
  Ohta Y, et al.
- Journal Title
  
  Physical Review E
  
  Volume: 84 Issue: 4 Pages: 15-15
- DOI
  10.1103/physreve.84.041922
- URL
  http://link.aps.org/doi/10.1103/PhysRevE.84.041922
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22310117, KAKENHI-PROJECT-22700309, KAKENHI-PROJECT-23651201
[Journal Article] Cellular-automaton model of the cooperative dynamics of RNA polymerase II during transcription in human cells2011
- Author(s)
  Ohta Y, Kodama T, Ihara S
- Journal Title
  
  Phys. Rev. E (Stat. Nonlin. Soft Matter Phys.）
  
  Volume: ８４
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23651201
[Journal Article] Sev ere dermatitis with loss of epidermal Langerh ans cells in human and mouse zinc deficiency.2011
- Author(s)
  Kawamura T, Ohta Y, et al.
- Journal Title
  
  The Journal of Clinical Investigation
  
  Volume: 84 Issue: 2 Pages: 722-732
- DOI
  10.1172/jci58618
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22310117, KAKENHI-PROJECT-22700309, KAKENHI-PROJECT-23390282, KAKENHI-PROJECT-23591641, KAKENHI-PROJECT-24500360, KAKENHI-PROJECT-24659529
[Journal Article] Epigenetically coordinated GATA2 binding is necessary for endothelium specific endomucin sxpression2011
- Author(s)
  Kanki Y, Kohro T, Jiang S, Tsutsumi S, Mimura I, Suehiro J, Wada Y, Ohta Y, Ihara S, Iwanari H, Naito M, Hamakubo T, Aburatani H, Kodama T, Minami T.
- Journal Title
  
  The EMBO Journal in press
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20221010
[Journal Article] Epigenetically coordinated GATAT2 binding is necessary for endothelium-specific endomucin expression2011
- Author(s)
  Kanki Y, Kohro T, Jiang S, Tsutsumi S, Mimura I, Suehiro J, Wada Y, Ohta Y, Ihara S, Iwanari H, Naito M, Hamakubo T, Aburatani H, Kodama T, Minami T
- Journal Title
  
  EMBO J
  
  Volume: 30 Issue: 13 Pages: 2582-95
- DOI
  10.1038/emboj.2011.173
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-10J02514, KAKENHI-PROJECT-20221009, KAKENHI-PROJECT-20221010, KAKENHI-ORGANIZER-22112001, KAKENHI-PROJECT-22310117, KAKENHI-PROJECT-22700309, KAKENHI-PROJECT-22700875, KAKENHI-PUBLICLY-23125503, KAKENHI-PROJECT-23659050
[Journal Article] Proteomic analysis of native hepatocyte nuclear factor-4a(HNF4a)isoforms, phosphorylation status, and nteractive cofactors2011
- Author(s)
  Daigo_K, Kawamura T, Ohta Y, Ohashi R, Katayose S, Tanaka T, Aburatani H, Naito M, Kodama T, Ihara S, Hamakubo T.
- Journal Title
  
  J Biol Chem. 286(1)
  
  Pages: 674-686
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20221010
[Journal Article] Proteomic analysis of native hepatocyte nuclear factor-4alpha (HNF4alpha) isoforms, phosphorylation status, and interactive cofactors.2011
- Author(s)
  Daigo, K, Kawamura T, Ohta Y, et al.
- Journal Title
  
  The Journal of Biological Chemistry
  
  Volume: 286 Pages: 674-686
- Data Source
  KAKENHI-PROJECT-22310117
[Journal Article] Proteomic analysis of native hepatocyte nuclear factor-4α (HNF4α) isoforms, phosphorylation status, and interactive cofactors2011
- Author(s)
  Daigo K, Kawamura T, Ohta Y, Ohashi R, Katayose S, Tanaka T, Aburatani H, Naito M, Kodama T, Ihara S, Hamakubo T
- Journal Title
  
  J Biol Chem
  
  Volume: 286(1) Issue: 1 Pages: 674-686
- DOI
  10.1074/jbc.m110.154732
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20221010, KAKENHI-PROJECT-22590331, KAKENHI-PROJECT-22700309
[Journal Article] Epigenetically coordinated GATA2binding is necessary for endothelium specific endomucin sxpression2011
- Author(s)
  Kanki Y, Kohro T, Jiang S, Tsutsumi S, Mimura I, Suehiro J, Wada Y, Ohta Y, Ihara S, Iwanari H, Naito M, Hamakubo T, Aburatani H, Kodama T, Minami T.
- Journal Title
  
  The EMBO Journal
  
  Volume: in press(掲載確定)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20221010
[Journal Article] Active RNA Polymerases : Mobile or Immobile Molecular Machines.2010
- Author(s)
  Papantonis A, Larkin JD, Wada Y.Ohta Y, Ihara S, Kodama T, Cook PR
- Journal Title
  
  PLoS Biology
  
  Volume: Issue 7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20221010
[Journal Article] Active RNA polymerases2010
- Author(s)
  Papantonis, A., Larkin, J. D., Wada, Y., Ohta, Y., Ihara, S., Kodama, T., and Cook, P. R.
- Journal Title
  
  mobile or immobile molecular machines PLoS biology 8
  
  Volume: e1000419.
- Data Source
  KAKENHI-PROJECT-22310117
[Journal Article] Active RNA Polymerases : Mobile or Immobile Molecular Machines?2010
- Author(s)
  Papantonis A, Larkin JD, Wada Y, Ohta Y, Ihara S, Kodama T, Cook PR
- Journal Title
  
  PLoS Biology
  
  Volume: Volume8, Issue7 Issue: 7 Pages: e1000419-e1000419
- DOI
  10.1371/journal.pbio.1000419
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700309
[Journal Article] A wave of nascent transcription on activated human genes.2009
- Author(s)
  Wada Y, Ohta Y, Hamakubo T, Shirahige K, Aburatani H, Kodama T, Cook PR, Ihara S., et al.
- Journal Title
  
  Proc Natl Acad Sci USA. Oct 27 ; 106(43)
  
  Pages: 18357-61
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20221010
[Journal Article] A wave of nascent transcription on activated human genes2009
- Author(s)
  Wada Y, Ohta Y, Xu M, Tsutsumi S, Minami T, Inoue K, Komura D, Kitakami J, Oshida N, Papantonis A, Izumi A, Kobayashi M, Meguro H, Kanki Y, Mimura I, Yamamoto K, Mataki C, Hamakubo T, Shirahige K, Aburatani H, Kimura H, Kodama T, Cook PR, Ihara S
- Journal Title
  
  Proc Natl Acad Sci U S A
  
  Volume: 106(43) Issue: 43 Pages: 18357-18361
- DOI
  10.1073/pnas.0902573106
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20221010
[Journal Article] A wave of nascent transcription on activated human genes.2009
- Author(s)
  Wada Y, Ohta Y, Xu M, Tsutsumi S, Minami T, Inoue K, Komura D, Kitakami J, Oshida N, Papantonis A, Izumi A, Kobayashi M, Meguro H, Kanki Y, Mimura I, Yamamoto K, Mataki C, Hamakubos T, Shirahige K, Aburatani H, Kimura H, Kodama T, Cook PR, Ihara S.
- Journal Title
  
  Proc Natl Acad Sci USA 106(43)
  
  Pages: 18357-18361
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20221010
[Journal Article] Ultradiscrete Modeling and Simulation for Gene Transcription
- Author(s)
  Yoshihiro Ohta and Sigeo Ihara
- Journal Title
  
  Publications of the Research Institute for Mathematical Sciences (Supplement)
  
  Volume: (in press)
- Data Source
  KAKENHI-PROJECT-23651201
[Presentation] AI Smart Robot Network for Biomedical Analysis2017
- Author(s)
  Yoshihiro Ohta
- Organizer
  AI in Asia
- Place of Presentation
  早稲田大学国際会議場井深大記念ホール
- Invited
- Data Source
  KAKENHI-PROJECT-15K00397
[Presentation] Dynamic Approaches to Living System in Cell Biology2016
- Author(s)
  大田佳宏
- Organizer
  第68 回日本細胞生物学会大会　細胞生物学の生命動態研究シンポジウム
- Place of Presentation
  京都テルサ大会議室
- Invited
- Data Source
  KAKENHI-PROJECT-15K00397
[Presentation] Cellular-automaton model of the cooperative dynamics of RNA polymerase II during the transcription process in human cells2015
- Author(s)
  大田佳宏
- Organizer
  文部科学省科学技術試験研究委託事業「数学・数理科学と諸科学・産業との協働によるイノベーション創出のための研究促進プログラム」生命ダイナミクスの数理とその応用
- Place of Presentation
  東京大学大学院数理科学研究科大講堂
- Year and Date
  2015-12-11
- Invited
- Data Source
  KAKENHI-PROJECT-15K00397
[Presentation] Ultradiscrete Modeling of Pol II dynamics for gene transcription2015
- Author(s)
  大田佳宏
- Organizer
  BMB2015 第38回日本分子生物学会年会、第88回日本生化学会大会合同大会
- Place of Presentation
  神戸商工会議所3階神商ホールB（第27会場）
- Year and Date
  2015-12-03
- Invited
- Data Source
  KAKENHI-PROJECT-15K00397
[Presentation] 遺伝子の転写機構解明のための数理モデル2015
- Author(s)
  大田佳宏
- Organizer
  Seminar on Mathematics for various disciplines (諸分野のための数学研究会)
- Place of Presentation
  東京大学大学院数理科学研究科
- Year and Date
  2015-01-27
- Invited
- Data Source
  KAKENHI-PROJECT-24500360
[Presentation] 転写過程の超離散モデリングとシミュレーション2012
- Author(s)
  大田佳宏
- Organizer
  京都大学数理解析研究所研究集会
- Place of Presentation
  京都大学益川ホール
- Data Source
  KAKENHI-PROJECT-22310117
[Presentation] Ultradiscrete Modeling and Simulation for Gene Transcription2012
- Author(s)
  大田佳宏
- Organizer
  数理解析研究所共同研究集会「非線形離散可積分系の拡がり」
- Place of Presentation
  京都大学益川ホール(京都府）
- Invited
- Data Source
  KAKENHI-PROJECT-23651201
[Presentation] Proteomic analysis of circulating pentraxin3 (PTX3) complexes in sepsis revealed the PTX3-NETs complex formation: Implication of new protectiveroles against sepsis2012
- Author(s)
  Kenji Daigo, Naotaka Yamaguchi, Takeshi Kawamura, Koichi Matsubara,Shuying Jiang, Riuko Ohashi, Yukio Sudou, Makoto Naito, Kenji Inoue, and Takao Hamakubo
- Organizer
  9th International Conference on Innate Immunity
- Place of Presentation
  ギリシャ
- Year and Date
  2012-06-23
- Data Source
  KAKENHI-PROJECT-20221010
[Presentation] Ultradiscrete Modeling and Simulation for Gene Transcription2012
- Author(s)
  大田佳宏
- Organizer
  数理解析研究所共同研究集会「非線形離散可積分系の拡がり」
- Place of Presentation
  京都大学益川ホール (京都府) (招待講演)
- Data Source
  KAKENHI-PROJECT-23651201
[Presentation] 転写過程の超離散モデリングとシミュレーション2012
- Author(s)
  大田佳宏
- Organizer
  京都大学数理解析研究所研究集会
- Place of Presentation
  京都大学　益川ホール（京都府）
- Invited
- Data Source
  KAKENHI-PROJECT-24500360
[Presentation] High Density Spatial and Temporal Simulation Reveals Transcriptional Dynamics2011
- Author(s)
  Ohta, Yoshihiro
- Organizer
  The Pacific Symposium on Biocomputing(PSB) 2011
- Place of Presentation
  Kona, USA
- Data Source
  KAKENHI-PROJECT-22700309
[Presentation] High Density Spatial and Temporal Simulation Reveals Transcriptional Dynamics2011
- Author(s)
  大田佳宏、Yoshihiro
- Organizer
  The Pacific Symposium on Biocomputing (PSB) 2011
- Place of Presentation
  Kona, USA.
- Data Source
  KAKENHI-PROJECT-22310117
[Presentation] High Density Spatial and Temporal Simulation Reveals Transcriptional Dynamics2011
- Author(s)
  Ohta, Yoshihiro
- Organizer
  The Pacific Symposium on Biocomputing (PSB) 2011
- Place of Presentation
  Kona, USA.
- Data Source
  KAKENHI-PROJECT-22700309
[Presentation] High Density Spatial and Temporal Simulation Reveals Transcription Dynamics2011
- Author(s)
  Ohta Y, Wada Y, Kodama T, Ihara S
- Organizer
  Pacific Symposium on Biocomputing
- Place of Presentation
  Hawaii/U.S
- Data Source
  KAKENHI-PROJECT-20221010
[Presentation] Genome-wide Analysis of PPARd/RXRa Heterodimer Reveals Antiinflammatory Action of PPARd Ligand in Macrophages.2010
- Author(s)
  Tanaka T, Ohta Y, Ihara S, kobama T, et al.
- Organizer
  Keystone Symposia
- Place of Presentation
  Keystone, Colorado, USA,
- Year and Date
  2010-03-24
- Data Source
  KAKENHI-PROJECT-20221010
[Presentation] MultipleSnapshots Obtained Using Genomic TilingArrays Reveal the Dynamics ofTranscription in Human UmbilicalEndothelial Cells2008
- Author(s)
  Tatsuhiko Kodama, Yoshihiro Ohta, MengXu, Takashi Minami1, Youichiro Wada, Shu-ichi Tsutsumi, Shumpei Ishikawa,Takao HamakuboHiroyuki Aburatani, PeterR Cook, and Sigeo Ihara
- Place of Presentation
  SydneyAustralia
- Data Source
  KAKENHI-PROJECT-19800009
[Presentation] Multiple Snapshots Obtained Using Genomic Tiling Arrays Reveal the Dynamics of Transcription in Human Umbilical2008
- Author(s)
  Tatsuhiko Kodama, Yoshihiro Ohta, Meng Xu, Takashi Minami, Youichiro Wada, Shu-ichi Tsutsumi, Shumpei Ishikawa, Takao Hamakubo, Hiroyuki Aburatani, Peter R Cook, and Sigeo Ihara
- Organizer
  Endothelial Cells
- Place of Presentation
  Sydney, Australia
- Data Source
  KAKENHI-PROJECT-19310129
[Presentation] Packet traffic analysis of interactome networks2007
- Author(s)
  Nobuhiko Oshida, Naoko S. Nishikawa, Yoshihiro Ohta, Rikako Suzuki, and Sigeo Ihara
- Organizer
  The Conference on Interactome Networks, Welcome Trust
- Place of Presentation
  UK
- Data Source
  KAKENHI-PROJECT-19310129
[Presentation] HIGH-RESOLUTION TARGETED PROTEOMICS OF ENDOGENOUS NUCLEAR RECEPTOR COMPLEX USING HIGH-QUALITY IMMUNOMAGNETIC BEADS2007
- Author(s)
  Kenji Daigo, Takeshi Kawamura, Satoshi Katayose, Toshiya Tanaka, Yoshihiro Ohta Sieo Ihara
- Organizer
  Cold spring Harvar Meeting, Mecharlisms of eukaryotic transcription
- Place of Presentation
  Cold spring Harvar,NY,US
- Year and Date
  2007-08-30
- Data Source
  KAKENHI-PROJECT-19310129
[Presentation] Packet traffic analysis of interactome networks.The Conference on Interactome Networks2007
- Author(s)
  Nobuhiko Oshida, Naoko S.Nishikawa, Yoshihiro Ohta, Rikako Suzuki and Sieo Ihara
- Organizer
  Welcome Trust/Coldspring Harvar Meeting Interactome Network
- Place of Presentation
  Welcome Trust, Hinxton,UK
- Year and Date
  2007-08-03
- Data Source
  KAKENHI-PROJECT-19310129
[Presentation] High-resolution targeted proteomics of endogenousnuclear receptor comprex using high-quality immunomagnetic beads2007
- Author(s)
  Kenji Daigo, Takeshi Kawamura, Satoshi Katayose, Yoshihiro Ohta,Toshiya Tanaka, Sigeo Ihara, Tatsuhiko Kodama, Takao Hamakubo
- Organizer
  Cold Spring Harbor Laboratory Mechanisms of Eukaryotic Transcription meeting
- Place of Presentation
  Cold Spring Harbor, NY
- Year and Date
  2007-08-31
- Data Source
  KAKENHI-PROJECT-19310129
[Presentation] Robustness of the protein interaction networks2007
- Author(s)
  Nobuhiko Oshida, Jun-ichi Kitakami, Naoko S. Nishikawa, Yoshihiro Ohta, and Sieo Ihara
- Organizer
  The 7th international workshop on advanced genomics
- Place of Presentation
  Tokyo
- Data Source
  KAKENHI-PROJECT-19310129
[Presentation] Robustness of the protein interaction network.2007
- Author(s)
  Nobuhiko Oshida, Jun-ichi Kitakami, Naoko S. Nishikawa, Yoshihiro Ohta, and Sigeo Ihara and Sigeo Ihara
- Organizer
  The 7th international workshop on advanced genomics.
- Place of Presentation
  Tokyo, Japan.
- Data Source
  KAKENHI-PROJECT-19800009
[Presentation] Robustness of the protein interaction network2007
- Author(s)
  Nobuhiko Oshida, Jun-ichi Kitakami, Naoko S. Nishikawa, Yoshihiro Ohta, and Sigeo Ihara
- Organizer
  The 7th international workshop on advanced genomics
- Place of Presentation
  Tokyo, Japan
- Data Source
  KAKENHI-PROJECT-19310129
[Presentation] High-resolution targetedproteomics of endogenousnuclear receptorcomprex using high-quality immunomagneticbeads2007
- Author(s)
  Kenji Daigo, Takeshi Kawamura, SatoshiKatayose, Yoshihiro Ohta, Toshiya Tanaka, Sigeo Ihara, Tatsuhiko Kodama, TakaoHamakubo
- Organizer
  Cold Spring Harbor LaboratoryMechanisms of Eukaryotic Transcriptionmeeting
- Place of Presentation
  cold Spring Harbor, NY.
- Year and Date
  2007-08-31
- Data Source
  KAKENHI-PROJECT-19800009
[Presentation] Robustness of the proteininteraction network2007
- Author(s)
  Nobuhiko Oshida, Jun-ichi Kitakami, Naoko S. Nishikawa, Yoshihiro Ohta, and Sigeo Ihara
- Organizer
  The 7thinternational workshop on advancedgenomics
- Place of Presentation
  Tokyo, Japan
- Data Source
  KAKENHI-PROJECT-19800009
[Presentation] 転写機構解明のための数理モデルとシミュレーション
- Author(s)
  大田佳宏
- Organizer
  日本数学会（2014年度年会）
- Place of Presentation
  学習院大学
- Invited
- Data Source
  KAKENHI-PROJECT-24500360
[Presentation] 転写機構解明のための時空間数理モデル
- Author(s)
  大田佳宏
- Organizer
  生命動態システム科学四拠点・CREST・PRESTO合同シンポジウム「生命動態の分子メカニズムと数理」
- Place of Presentation
  京都大学芝蘭会館稲盛ホール
- Year and Date
  2015-03-16 – 2015-03-17
- Invited
- Data Source
  KAKENHI-PROJECT-24500360

1. IHARA Sigeo (30345136)

# of Collaborated Projects: 5 results

# of Collaborated Products: 24 results
2. HAMAKUBO Takao (90198797)

# of Collaborated Projects: 2 results

# of Collaborated Products: 10 results
3. KAWAMURA Takeshi (70306835)

# of Collaborated Projects: 2 results

# of Collaborated Products: 5 results
4. NAITO Makoto (30045786)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
5. MIYOSHI Motosuke (40345137)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. MOCHIZUKI Yasuhiro (80282523)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. IWANARI Hiroko (20176556)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
8. SAKIHAMA Toshiko (70187061)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. DAIGO Kenji (20466866)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
10. HORIUCHI Keiko (00456203)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. OHASHI Riuko (20447600)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
12. WADA Youichiro (10322033)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
13. KANKI Yasuharu (00534869)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. KHORO Takahide (40401046)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 南敬 (00345141)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 時弘哲治

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
17. 南敬

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Ota Yoshihiro 大田 佳宏

OHTA Yoshihiro 大田 佳宏

Research Projects

Research Products

Co-Researchers

Elucidation of gene transcription of single cell by fusion of topology and ultradiscretizationPrincipal Investigator

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Ultra-discrete model and ChIP-Seq analysis for gene transcriptionPrincipal Investigator

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A study of thermodynamics and Information processing in the transcription factory

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Analysis of transcription factory and epigenomic modification in inflammatory stimulation driven transcription wave

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High density simulation for transcriptional dynamicsPrincipal Investigator

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Dynamic Proteomics of Transcriptional and Nuclear Architecture

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Analysis of phosphorylation signaling pathways

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Dynamic Pathway Prediction by Signature Analysisusing Multiple EdgePrincipal Investigator

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[Journal Article] Direct Evidence for Pitavastatin Induced Chromatin Structure Change in the KLF4 Gene in Endothelial Cells.2014

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[Journal Article] 真核生物の転写機構の数理解析2014

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[Journal Article] 遺伝子転写機構の時空間シミュレーション2014

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[Journal Article] Ultradiscrete Modeling and Simulation for Gene Transcription2013

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[Journal Article] Ultradiscrete Modeling and Simulation for Gene Transcription2013

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[Journal Article] Ultradiscrete Modeling and Simulation for Gene Transcription2013

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[Journal Article] A path preference cellular-automaton model for traffic flow through transit points and its application to the transcription process in biology2012

Author(s)

Ota Yoshihiro 大田佳宏

OHTA Yoshihiro 大田佳宏