Makita Yuko 蒔田由布子

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MAKITA Yuko 蒔田由布子

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Researcher Number	80443026
Other IDs	https://orcid.org/0000-0001-5745-6007
Affiliation (Current)	2025: 前橋工科大学, 工学部, 教授
Affiliation (based on the past Project Information) *help	2022 – 2024: 前橋工科大学, 工学部, 教授 2021: 国立研究開発法人理化学研究所, 環境資源科学研究センター, 上級研究員 2017 – 2020: 国立研究開発法人理化学研究所, 環境資源科学研究センター, 研究員 2010 – 2012: 独立行政法人理化学研究所, 生命情報基盤研究部門, 研究員
Review Section/Research Field	Principal Investigator System genome science / System genome science Except Principal Investigator Basic Section 43050:Genome biology-related / Medium-sized Section 44:Biology at cellular to organismal levels, and related fields / Medium-sized Section 38:Agricultural chemistry and related fields
Keywords	Principal Investigator データベース / 発現量 / transcriptome / MOROKOSHI database / スィートソルガム / グレインソルガム / Sorghum bicolor Keller / Sorghum bicolor BTx623 / TSS / 転写開始点 … More / D gene / HY5 / 転写因子 / C4草本植物 / gDB-seq / CAGE / RNA-seq / ソルガム / トランスクリプトーム / Synecocystis / 光合成細菌 / マニュアルアノテーション / 放線菌 / Synochocystis / Streptomyces / ネットワークモチーフ解析 / プロモータ解析 / 比較ゲノム / 文献抽出 / 転写制御 / リファレンスデータベース … More Except Principal Investigator 植物 / 遺伝子発現 / NMD / 光受容 / リボソームプロファイリング / 翻訳開始点 / 転写開始点 / 翻訳変化 / 光応答 / 海洋メタゲノム / ゲノム解析 / 藻類 / クリプトクロム / フィトクロム / 光受容体 / プラズマ Less

植物の成長段階における転写・翻訳開始点に依存したmRNAの運命決定の解明
- Principal Investigator
  
  栗原志夫
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  Institute of Physical and Chemical Research
  The University of Tokyo
温度制御プラズマによる植物の生育促進機構解明及びソルガムの生育促進法の確立
- Principal Investigator
  
  柳川由紀
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 38:Agricultural chemistry and related fields
- Research Institution
  Institute of Physical and Chemical Research
Functional analysis of chimeric photoreceptor gene, PHYCRY identified from marine metagenome data
- Principal Investigator
  
  Shimada Setsuko
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 44:Biology at cellular to organismal levels, and related fields
- Research Institution
  Institute of Physical and Chemical Research
Construction of transcription related database of C4 grass plant, Sorghum bicolor and its applicationPrincipal Investigator
- Principal Investigator
  
  Makita Yuko
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  System genome science
- Research Institution
  Institute of Physical and Chemical Research
Database construction for transcriptional regulation in Streptomyces and Synechocystis and these applicationsPrincipal Investigator
- Principal Investigator
  
  MAKITA Yuko
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  System genome science
- Research Institution
  The Institute of Physical and Chemical Research

All 2024 2023 2022 2021 2020 2019 2018 2017 2013 2012 2010 Other

All Journal Article Presentation Book

[Book] Bacterial Gene Regulation and Transcriptional Networks2013
- Author(s)
  Yuko Makita
- Publisher
  Caister Academic Press
- Data Source
  KAKENHI-PROJECT-22710199
[Book] Chapter 10: Bacillus subtilis Transcriptional Network Bacterial Gene Regulation and Transcriptional Networks (M. Madan Babu Edit)
- Author(s)
  Yuko MAKITA and Kenta NAKAI
- Publisher
  Caister Academic Press
- Data Source
  KAKENHI-PROJECT-22710199
[Journal Article] The blue light signaling inhibitor 3-bromo-7-nitroindazole affects gene translation at the initial reception of blue light in young Arabidopsis seedlings2024
- Author(s)
  Yukio Kurihara, Chika Akagi, Yuko Makita, Masaharu Kawauchi, Emiko Okubo-Kurihara, Tomohiko Tsuge, Takashi Aoyama, Minami Matsui
- Journal Title
  
  Plant Biotechnology
  
  Volume: -
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K23868
[Journal Article] Transcriptional activation of ribosome-related genes at initial photoreception is dependent on signals derived from both the nucleus ans the chloroplants in Arabidopsis thaliana.2023
- Author(s)
  Akagi, C., Kurihara, Y., Makita, Y., Kawaguchi, M., Tsuge, T., Aoyama, T., Matsui, M.
- Journal Title
  
  J. Plant Res.
  
  Volume: 136 Issue: 2 Pages: 227-238
- DOI
  10.1007/s10265-022-01430-8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21H02505, KAKENHI-PROJECT-23K23868, KAKENHI-PROJECT-22K06279
[Journal Article] Intergenic splicing-stimulated transcriptional readthrough is suppressed by nonsense-mediated mRNA decay in Arabidopsis2022
- Author(s)
  Kurihara Yukio、Makita Yuko、Kawauchi Masaharu、Kageyama Ami、Kuriyama Tomoko、Matsui Minami
- Journal Title
  
  Communications Biology
  
  Volume: 5 Issue: 1
- DOI
  10.1038/s42003-022-04348-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K23868
[Journal Article] Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton2021
- Author(s)
  Makita Yuko、Suzuki Shigekatsu、Fushimi Keiji、Shimada Setsuko、Suehisa Aya、Hirata Manami、Kuriyama Tomoko、Kurihara Yukio、Hamasaki Hidefumi、Okubo-Kurihara Emiko、Yoshitake Kazutoshi、Watanabe Tsuyoshi、Sakuta Masaaki、Gojobori Takashi、Sakami Tomoko、Narikawa Rei、Yamaguchi Haruyo、Kawachi Masanobu、Matsui Minami
- Journal Title
  
  Nature Communications
  
  Volume: 12 Issue: 1 Pages: 3593-3593
- DOI
  10.1038/s41467-021-23741-5
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21438
[Presentation] Intergenic splicing-mediated readthrough transcripts are eliminated by NMD in Arabidopsis.2023
- Author(s)
  Kurihara Y, Makita Y, Kawauchi M, Kuriyama T, Matsui M.
- Organizer
  第23回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-23K23868
[Presentation] 遺伝子間スプライシングによるリードスルー転写物はNMDの標的となる2023
- Author(s)
  栗原志夫, 蒔田由布子, 河内正治, 蔭山杏実, 栗山朋子, 松井南
- Organizer
  第64回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-23K23868
[Presentation] 海洋藻類が保持する橙色光／遠赤色光と青色光を感知する新規光受容体・Dualchromeの単離と機能解析2022
- Author(s)
  嶋田勢津子, 蒔田由布子, 鈴木重勝, 伏見圭司, 陶久あや, 平田愛実, 栗山朋子, 栗原志夫, 濱崎英史, 栗原恵美子, 吉武和敏, 渡辺剛, 作田正明, 五條堀孝, 坂見知子, 成川礼, 山口晴代, 河地正伸, 松井南
- Organizer
  第22回　日本光生物学協会年会
- Data Source
  KAKENHI-PROJECT-20K21438
[Presentation] 新規光受容体・Dualchromeは橙色光／遠赤色光と青色光を感知する2021
- Author(s)
  成川礼、伏見圭司、蒔田由布子、鈴木重勝、嶋田勢津子、陶久あや、平田愛美、栗山朋子、栗原志夫、濱崎英史、栗原（大窪）恵美子、吉武和敏、渡辺剛、作田正明、五条堀孝、山口晴代、河地正伸、松井南
- Organizer
  日本植物学会第85回大会
- Data Source
  KAKENHI-PROJECT-20K21438
[Presentation] Characterization of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton2021
- Author(s)
  Minami Matsui, Yuko Makita, Shigekatsu Suzuki, Keiji Fushimi, Setsuko Shimada, Haruyo Yamaguchi, Tomoko Sakami, Rei Narikawa, Masanobu Kawachi
- Organizer
  International Symposium on Plant Photobiology (ISPP 2021)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21438
[Presentation] 海洋メタゲノムデータからの新規光受容体の発見2021
- Author(s)
  蒔田由布子, 鈴木重勝, 伏見圭司, 嶋田勢津子, 陶久あや, 平田愛実, 栗山朋子, 栗原志夫, 濱崎英史, 栗原恵美子, 吉武和敏, 渡辺剛,坂見知子, 作田正明, 五條堀孝, 成川礼, 山口晴代, 河地正伸, 松井南
- Organizer
  日本植物学会第85回大会
- Data Source
  KAKENHI-PROJECT-20K21438
[Presentation] 新規光受容体・Dualchromeの生物的機能解析2021
- Author(s)
  嶋田勢津子, 蒔田由布子, 鈴木重勝, 伏見圭司, 陶久あや, 平田愛実, 栗山朋子, 栗原志夫, 濱崎英史, 栗原恵美子, 吉武和敏, 渡辺剛, 作田正明, 五條堀孝, 成川礼, 山口晴代, 河地正伸, 松井南
- Organizer
  日本植物学会第85回大会
- Data Source
  KAKENHI-PROJECT-20K21438
[Presentation] 海洋メタゲノム配列からの新規光受容体の発見2020
- Author(s)
  蒔田由布子, 鈴木重勝, 伏見圭司, 嶋田勢津子, 陶久あや, 栗山朋子, 栗原志夫, 濱崎英史,平田愛実, 成川礼, 山口晴代, 河地正伸, 松井南
- Organizer
  生物多様性のDNA情報学
- Data Source
  KAKENHI-PROJECT-20K21438
[Presentation] ソルガムの転写制御解析とMOROKOSHI データベースの更新2019
- Author(s)
  蒔田由布子, 栗山朋子, 下平春香, 嶋田勢津子, 松井南
- Organizer
  第10 回ソルガムワークショップ
- Data Source
  KAKENHI-PROJECT-17K07265
[Presentation] Comparison of Expression profile of grain and sweet sorghum by using CAGE methods2019
- Author(s)
  Minami Matsui, Tomoko Kuriyama, Mika Kawashima, Haruka Shimohira, Yuko Makita
- Organizer
  第397回生存圏シンポジウムクリーンエネルギー生産に向けたリグノセルロース分子育種の現状と展望
- Data Source
  KAKENHI-PROJECT-17K07265
[Presentation] ソルガムのマルチトランスクリプトーム解析と遺伝子導入技術の応用2018
- Author(s)
  Tomoko Kuriyama, Yuko Makita, Mika Kawashima, Setsuko Shimada and Minami Matsui
- Organizer
  ソルガム研究会
- Data Source
  KAKENHI-PROJECT-17K07265
[Presentation] バイオマス植物ソルガムにおけるマルチトランスクリプトーム解析2017
- Author(s)
  蒔田由布子、川島美香、栗山（近藤）朋子、嶋田勢津子、松井南
- Organizer
  第40回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-17K07265
[Presentation] 組織別RNA-seqによるグレインソルガム(BTx623)とスイートソルガム(Keller)の比較2017
- Author(s)
  蒔田由布子、川島美香、栗山朋子、嶋田勢津子、松井南
- Organizer
  第8回ソルガムワークショップ
- Data Source
  KAKENHI-PROJECT-17K07265
[Presentation] MOROKOSHI: Transcriptome database in Sorghum bicolor and its updates2017
- Author(s)
  Yuko Makita, Mika Kawashima, Tomoko Kuriyama, Setsuko Shimada, Minami Matsui
- Organizer
  The 16th International Conference on Bioinformatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07265
[Presentation] C4草本植物ソルガムにおけるマルチトランスクリプトーム解析と MOROKOSHIデータベースの紹介2017
- Author(s)
  蒔田由布子、川島美香、栗山朋子、嶋田勢津子、松井南
- Organizer
  第35回日本植物細胞分子生物学会大会
- Data Source
  KAKENHI-PROJECT-17K07265
[Presentation] Construction of transcriptional regulatory database in Streptomyces and comparative analysis of transcription factor binding sequences2012
- Author(s)
  Yuko MAKITA
- Organizer
  2012年生命医薬情報学連合大会
- Place of Presentation
  東京都江戸川区タワーホール船堀
- Data Source
  KAKENHI-PROJECT-22710199
[Presentation] 放線菌転写関連データベース(DBSCR)の構築とゲノムGC含量と転写因子認識配列の相関2012
- Author(s)
  蒔田由布子
- Organizer
  第35回日本分子生物学会
- Place of Presentation
  福岡国際会議場
- Data Source
  KAKENHI-PROJECT-22710199
[Presentation] 放線菌転写関連データベース(DBSCR)の構築とゲノムGC 含量と転写因子認識配列の相関2012
- Author(s)
  蒔田由布子、石井崇洋、豊田哲郎、中井謙太
- Organizer
  第35回日本分子生物学会
- Place of Presentation
  福岡国際会議場
- Data Source
  KAKENHI-PROJECT-22710199
[Presentation] Construction of transcriptional regulatory database in Streptomyces and comparative analysis of transcription factor binding sequences2012
- Author(s)
  Yuko MAKITA, Takahiro ISHII, Tetsuro TOYODA, Kenta NAKAI
- Organizer
  2012 年生命医薬情報学連合大会
- Place of Presentation
  東京都江戸川区タワーホール船堀
- Data Source
  KAKENHI-PROJECT-22710199
[Presentation] 放線菌転写関連データベース(DBSCR)の構築と転写モチーフ解析2010
- Author(s)
  蒔田由布子
- Organizer
  グラム陽性菌ゲノム機能会議
- Place of Presentation
  ホテル木曽路
- Year and Date
  2010-09-03
- Data Source
  KAKENHI-PROJECT-22710199
[Presentation] 放線菌転写関連DB:DBSCR2010
- Author(s)
  蒔田由布子
- Organizer
  グラム陽性菌ゲノム機能会議
- Place of Presentation
  長野
- Year and Date
  2010-09-03
- Data Source
  KAKENHI-PROJECT-22710199

1. Shimada Setsuko (40432033)

# of Collaborated Projects: 2 results

# of Collaborated Products: 7 results
2. 柳川由紀 (90432591)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 沖野晃俊 (60262276)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 鈴木重勝 (10785108)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
5. 栗原志夫 (60455342)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
6. 青山卓史

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Makita Yuko 蒔田 由布子

MAKITA Yuko 蒔田 由布子

Research Projects

Research Products

Co-Researchers

植物の成長段階における転写・翻訳開始点に依存したmRNAの運命決定の解明

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

温度制御プラズマによる植物の生育促進機構解明及びソルガムの生育促進法の確立

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Functional analysis of chimeric photoreceptor gene, PHYCRY identified from marine metagenome data

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Construction of transcription related database of C4 grass plant, Sorghum bicolor and its applicationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Database construction for transcriptional regulation in Streptomyces and Synechocystis and these applicationsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Bacterial Gene Regulation and Transcriptional Networks2013

Author(s)

Publisher

Data Source

[Book] Chapter 10: Bacillus subtilis Transcriptional Network Bacterial Gene Regulation and Transcriptional Networks (M. Madan Babu Edit)

Author(s)

Publisher

Data Source

[Journal Article] The blue light signaling inhibitor 3-bromo-7-nitroindazole affects gene translation at the initial reception of blue light in young Arabidopsis seedlings2024

Author(s)

Journal Title

Data Source

[Journal Article] Transcriptional activation of ribosome-related genes at initial photoreception is dependent on signals derived from both the nucleus ans the chloroplants in Arabidopsis thaliana.2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Intergenic splicing-stimulated transcriptional readthrough is suppressed by nonsense-mediated mRNA decay in Arabidopsis2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton2021

Author(s)

Journal Title

DOI

Data Source

[Presentation] Intergenic splicing-mediated readthrough transcripts are eliminated by NMD in Arabidopsis.2023

Author(s)

Organizer

Data Source

[Presentation] 遺伝子間スプライシングによるリードスルー転写物はNMDの標的となる2023

Author(s)

Organizer

Data Source

[Presentation] 海洋藻類が保持する橙色光／遠赤色光と青色光を感知する新規光受容体・Dualchromeの単離と機能解析2022

Author(s)

Organizer

Data Source

[Presentation] 新規光受容体・Dualchromeは橙色光／遠赤色光と青色光を感知する2021

Author(s)

Organizer

Data Source

[Presentation] Characterization of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton2021

Author(s)

Makita Yuko 蒔田由布子

MAKITA Yuko 蒔田由布子