Kumagai Masahiko 熊谷真彦

Researcher Number	80738716
Other IDs
Affiliation (Current)	2023: 国立研究開発法人農業・食品産業技術総合研究機構, 高度分析研究センター, 主任研究員
Affiliation (based on the past Project Information) *help	2020 – 2022: 国立研究開発法人農業・食品産業技術総合研究機構, 高度分析研究センター, 主任研究員 2019 – 2020: 国立研究開発法人農業・食品産業技術総合研究機構, 高度解析センター, 主任研究員 2016 – 2019: 国立研究開発法人農業・食品産業技術総合研究機構, 高度解析センター, 研究員 2017: 国立研究開発法人農業・食品産業技術総合研究機構, 高度解析センター, 任期付研究員 2014 – 2015: 東京大学, 理学(系)研究科(研究院), 助教
Review Section/Research Field	Principal Investigator Genome biology / Basic Section 03060:Cultural assets study-related Except Principal Investigator Physical anthropology / Humanities and Social Sciences / Evolutionary biology / Transformative Research Areas, Section (I) / Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
Keywords	Principal Investigator イネ / 古代ゲノミクス / 次世代シーケンサー / 分子進化 / 栽培イネ / 古ゲノミクス / 葉緑体ゲノム / 栽培植物 / 進化 / 次世代シーケンサ … More / DNAバーコーディング / 歯石 / 古代DNA / AmpliconSeq / 雑穀 / 古代ゲノム / 栽培史 … More Except Principal Investigator 農耕 / 栽培化 / 弥生時代 / 縄文時代 / 古人骨 / 糞石 / ゲノム / 摂食物 / 縄文人 / 古環境 / 海進 / 水田 / 動物利用 / 植物利用 / 水田稲作 / 昆虫圧痕 / 衛星リモートセンシング / 動物資源 / 魚類資源 / 植物資源 / 植物遺体 / 動物遺体 / 環境 / 新石器時代 / 沖積平野 / 家畜 / 農耕経済 / 採集経済 / 花粉分析 / 珪藻分析 / 環境変遷 / 動植物遺体 / 栽培植物 / 都市化 / 長江下流域 / 稲作 / ダム遺構 / 良渚文化 / 自然環境 / 自然植生 / 海水準変動 / 家畜化 / 古環境変遷 / 農耕化 / 稲作文明 / 日本人の起源 / 古人骨DNA / ミトコンドリアゲノム / 核ゲノム / SNP解析 / ゲノム分析 / 旧石器時代 / 人類学 / 渡来系弥生人 / 歯石 / DNAメタバーコーディング法 / 摂食物同定 / 狩猟採集 / 農耕牧畜 / 先史時代 / ゲノム解析 / 植物性植物 / 狩猟採取 / 古代ゲノム / 腸内細菌 / 植物性食物 / メタゲノム / 先史日本列島人 / 食性 / メタゲノム解析 / DNAバーコーディング / 弥生人 / 古ゲノム解析 / 分岐時間 / 集団の大きさ / 大規模ゲノム解析 / 塩基置換推定 / 負の二項分布 / ポワソン分布 / ガンマ分布 / 分子進化 / 分岐年代推定 / 作物栽培化 / 植物考古学 / プロトシルクロード / マルチオミクス / 残存脂質分析 / 中央アジア / 考古学 / 考古生化学 / ゲノミクス / メタボロミクス / 古DNA / プロテオミクス / 土器圧痕 / ムギ / アワ・キビ / 脂質 / 次世代シークエンサー Less

Ancient genomics study on histories of crop species utilization in Jananese ArchiperagoPrincipal Investigator
- Principal Investigator
  
  熊谷真彦
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 03060:Cultural assets study-related
- Research Institution
  National Agriculture and Food Research Organization
Multi-profiling of Jomon people's nutrition, hygiene, and health status by coprolite genome analysis
- Principal Investigator
  
  太田博樹
- Project Period (FY)
  2021 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
- Research Institution
  The University of Tokyo
Archaeobotanical investigation to the exchange and transformation of rice, millet and wheat/barley food cultures
- Principal Investigator
  
  庄田慎矢
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (I)
- Research Institution
  Nara National Research Institute for Cultural Properties
Genome analysis of Yayoi people; its relevance for the origin of modern Japanese
- Principal Investigator
  
  MIZUNO Fuzuki
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Physical anthropology
- Research Institution
  Toho University
Metagenome analyses of coprolite and dental calculus for prehistoric specimens from the Japanese Archipelago
- Principal Investigator
  
  Hiroki Oota
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Physical anthropology
- Research Institution
  The University of Tokyo
  Kitasato University
Changes of paleoenvironment and Several stages of animal and plant utilization
- Principal Investigator
  
  KANEHARA Masaaki
- Project Period (FY)
  2015 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Humanities and Social Sciences
- Research Institution
  Nara University of Education
Crop Cultivation Process Deciphered by Large-Scale Genome Sequence Analysis
- Principal Investigator
  
  Itoh Takeshi
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Evolutionary biology
- Research Institution
  National Agriculture and Food Research Organization
  国立研究開発法人農業生物資源研究所
Genomic analysis of ancient rice remainsPrincipal Investigator
- Principal Investigator
  
  Kumagai Masahiko
- Project Period (FY)
  2014 – 2015
- Research Category
  
  Grant-in-Aid for Research Activity Start-up
- Research Field
  
  Genome biology
- Research Institution
  The University of Tokyo

All 2022 2021 2020 2019 2018 2016 2015 2014

All Journal Article Presentation Book

[Book] 炭化米DNA分析から明らかになった古代東北アジアにおける栽培イネの遺伝的多様性2019
- Author(s)
  熊谷真彦、庄田慎矢、水野文月、王瀝
- Total Pages
  262
- Publisher
  クバプロ
- ISBN
  9784878051616
- Data Source
  KAKENHI-PROJECT-17K07588
[Book] アフロ・ユーラシアの考古植物学2019
- Author(s)
  熊谷真彦、庄田慎矢、水野文月、王瀝
- Total Pages
  262
- Publisher
  クバプロ
- ISBN
  9784878051616
- Data Source
  KAKENHI-PROJECT-17H03738
[Book] 細胞工学　古代ゲノムでたどる人類史（監修植田信太郎）「遺伝情報から見た家畜化と栽培化」2016
- Author(s)
  熊谷真彦
- Total Pages
  4
- Publisher
  秀潤社
- Data Source
  KAKENHI-PROJECT-26890010
[Journal Article] Whole-Genome Sequencing of the NARO World Rice Core Collection (WRC) as the Basis for Diversity and Association Studies2020
- Author(s)
  Tanaka N, Shenton M, Kawahara Y, Kumagai M, Sakai H, Kanamori H, Yonemaru J, Fukuoka S, Sugimoto K, Ishimoto M, Wu J, Ebana K
- Journal Title
  
  Plant and Cell Physiology
  
  Volume: Epub ahead of print Pages: 922-932
- DOI
  10.1093/pcp/pcaa019
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H00939, KAKENHI-PROJECT-17K07588, KAKENHI-PROJECT-18K14364, KAKENHI-PROJECT-20H02892
[Journal Article] TASUKE+: a web-based platform for exploring GWAS results and large-scale resequencing data2019
- Author(s)
  Kumagai M, Nishikawa D, Kawahara Y, Wakimoto H, Itoh R, Tabei N, Tanaka T, Itoh T
- Journal Title
  
  DNA Research
  
  Volume: 26(6) Pages: 445-452
- DOI
  10.1093/dnares/dsz022
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H00939, KAKENHI-PROJECT-17K07588
[Journal Article] Rice varieties in archaic East Asia: reduction of its diversity from past to present times2016
- Author(s)
  Kumagai M, Kanehara M, Shoda S, Fujita S, Onuki S, Ueda S and Wang L.
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: 33(10) Pages: 2496-2505
- Data Source
  KAKENHI-PLANNED-15H05966
[Journal Article] Whole genome analysis of herbicide tolerant mutant rice generated by Agrobacterium-mediated gene targeting2015
- Author(s)
  Endo M, Kumagai M, Motoyama R, Sasaki-Yamagata H, Mori-Hosokawa S, Hamada M, Kanamori H, Nagamura Y, Katayose Y, Itoh T, Toki S
- Journal Title
  
  Plant Cell Physiology
  
  Volume: 56 Pages: 116-125
- DOI
  10.1093/pcp/pcu153
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-24241028, KAKENHI-PROJECT-26890010
[Journal Article] Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum)2015
- Author(s)
  Tsukazaki H, Yaguchi S, Sato S, Hirakawa H, Katayose Y, Kanamori H, Kurita K, Itoh T, Kumagai M, Mizuno S, Hamada M, Fukuoka H, Yamashita K, McCallum J, Shigyo M, and Wako T
- Journal Title
  
  Molecular Breeding
  
  Volume: 35 Pages: 55-55
- DOI
  10.1007/s11032-015-0265-x
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26890010
[Presentation] Genomics studies on Oryza species2022
- Author(s)
  Masahiko Kumagai
- Organizer
  The 4th meeting of Studies in Asian and African Geolinguistics
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K00996
[Presentation] 縄文人糞石を用いたマイクロバイオーム解析2021
- Author(s)
  西村瑠佳、谷野彰勇、鯵本眞友美、稲田健一、勝村啓史、小川元之、小金渕佳江、和久大介、熊谷真彦、杉本竜太、太田博樹、井ノ上逸郎
- Organizer
  日本進化学会第23回東京大会
- Data Source
  KAKENHI-PROJECT-21K19289
[Presentation] TASUKE+: A Web-Based Platform for Large-Scale Resequencing Data and Exploring GWAS Results2020
- Author(s)
  Kumagai M, Nishikawa D, Kawahara Y, Wakimoto H, Itoh R, Tabei N, Tanaka T, Itoh T
- Organizer
  International Plant & Animal Genome XXVIII
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07588
[Presentation] 沖縄島の旧石器時代人骨、港川1号の核ゲノム分析（第１報）2019
- Author(s)
  水野文月、林美千子、石谷孔司、熊谷真彦、五條堀淳、王瀝、黒崎久仁彦、近藤修、馬場悠男、植田信太郎
- Organizer
  第73回日本人類学会大会
- Data Source
  KAKENHI-PROJECT-17K07588
[Presentation] メタゲノム解析の基礎2019
- Author(s)
  熊谷真彦
- Organizer
  第214 回農林交流センターワークショップ「NGSデータ解析シンポジウム」
- Invited
- Data Source
  KAKENHI-PROJECT-17H03738
[Presentation] メタゲノム解析の基礎2019
- Author(s)
  熊谷真彦
- Organizer
  第214 回農林交流センターワークショップ「NGSデータ解析シンポジウム」
- Invited
- Data Source
  KAKENHI-PROJECT-17K07588
[Presentation] 居家以岩陰遺跡（縄文早期）及び土井ヶ浜遺跡（弥生中期）出土人骨のエピゲノム解析の試み2019
- Author(s)
  熊谷真彦、水野文月、石谷孔司、五條堀淳、林美千子、松下真実、松下孝幸、谷口康浩、近藤修、黒崎久仁彦、王瀝、植田信太郎
- Organizer
  第73回日本人類学会大会
- Data Source
  KAKENHI-PROJECT-17K07588
[Presentation] 居家以岩陰遺跡（縄文早期）及び土井ヶ浜遺跡（弥生中期）出土人骨の核ゲノム解析（予報）2019
- Author(s)
  石谷孔司、水野文月、熊谷真彦、五條堀淳、林美千子、松下真実、松下孝幸、谷口康浩、近藤修、黒崎久仁彦、王瀝、植田信太郎
- Organizer
  第73回日本人類学会大会
- Data Source
  KAKENHI-PROJECT-17K07588
[Presentation] 現代日本人におけるミトコンドリアゲノム系統の再構築2018
- Author(s)
  ◎水野文月、五條堀淳、石谷孔司、熊谷真彦、植田信太郎、松田文彦、日笠幸一郎、林美千子、長谷川智華、山田孝、黒崎久仁彦
- Organizer
  第27回日本DNA多型学会学術集会
- Data Source
  KAKENHI-PROJECT-17K07588
[Presentation] NGSデータ解析2016
- Author(s)
  熊谷真彦
- Organizer
  第201回農林交流センターワークショップ
- Place of Presentation
  農林水産技術会議事務局筑波産学連携支援センター
- Data Source
  KAKENHI-PLANNED-15H05966
[Presentation] 栽培イネ古DNA解析のための現生イネ大規模ゲノムデータ解析2015
- Author(s)
  熊谷真彦、王瀝、植田信太郎
- Organizer
  第69回日本人類学会大会
- Place of Presentation
  産業技術総合研究所臨海副都心センター（東京都・江東区）
- Year and Date
  2015-09-10
- Data Source
  KAKENHI-PROJECT-26890010
[Presentation] 初めて触れるデータ解析～NGSの現場から2014
- Author(s)
  熊谷真彦
- Organizer
  第２回次世代シーケンサー研究推進のためのデータ解析ワークショップ
- Place of Presentation
  茨城
- Year and Date
  2014-12-12
- Invited
- Data Source
  KAKENHI-PROJECT-26890010
[Presentation] Domestication history of rice inferred by ancient DNA and modern genomics.2014
- Author(s)
  Kumagai Masahiko
- Organizer
  Chile-Japan Academic Forum in UTokyo, Workshop on Genes, Cells and Organisms.
- Place of Presentation
  Tokyo, Japan
- Year and Date
  2014-10-08
- Invited
- Data Source
  KAKENHI-PROJECT-26890010

1. MIZUNO Fuzuki (50735496)

# of Collaborated Projects: 3 results

# of Collaborated Products: 6 results
2. Hiroki Oota (40401228)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
3. 植田信太郎 (20143357)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. KANEHARA Masaaki (10335466)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
5. Itoh Takeshi (80356469)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. SAKAI Hiroaki (20455322)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 丸山真史 (00566961)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 菊地大樹 (00612433)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 渡部展也 (10365497)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 鈴木三男 (80111483)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 黒住耐二 (80250140)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 小畑弘己 (80274679)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 大橋順 (80301141)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 勝村啓史 (10649544)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 須田亙 (20590847)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 庄田慎矢 (50566940)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. 西内巧 (20334790)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 遠藤英子 (60766947)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. 竹井惠美子 (90197252)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
20. 村上夏希 (90801267)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
21. 石谷孔司 (40826062)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
22. 梅崎昌裕 (30292725)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
23. 澤藤りかい (50814612)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
24. 和久大介 (60793578)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
25. ENDO Masaki

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
26. 土岐精一

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
27. 田中伸裕

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Kumagai Masahiko 熊谷 真彦

Research Projects

Research Products

Co-Researchers

Ancient genomics study on histories of crop species utilization in Jananese ArchiperagoPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Multi-profiling of Jomon people's nutrition, hygiene, and health status by coprolite genome analysis

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Archaeobotanical investigation to the exchange and transformation of rice, millet and wheat/barley food cultures

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Genome analysis of Yayoi people; its relevance for the origin of modern Japanese

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Metagenome analyses of coprolite and dental calculus for prehistoric specimens from the Japanese Archipelago

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Changes of paleoenvironment and Several stages of animal and plant utilization

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Crop Cultivation Process Deciphered by Large-Scale Genome Sequence Analysis

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Genomic analysis of ancient rice remainsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] 炭化米DNA分析から明らかになった古代東北アジアにおける栽培イネの遺伝的多様性2019

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Book] アフロ・ユーラシアの考古植物学2019

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Book] 細胞工学 古代ゲノムでたどる人類史（監修 植田信太郎）「遺伝情報から見た家畜化と栽培化」2016

Author(s)

Total Pages

Publisher

Data Source

[Journal Article] Whole-Genome Sequencing of the NARO World Rice Core Collection (WRC) as the Basis for Diversity and Association Studies2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] TASUKE+: a web-based platform for exploring GWAS results and large-scale resequencing data2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Rice varieties in archaic East Asia: reduction of its diversity from past to present times2016

Kumagai Masahiko 熊谷真彦

[Book] 細胞工学　古代ゲノムでたどる人類史（監修植田信太郎）「遺伝情報から見た家畜化と栽培化」2016