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FUKUNAGA Tsukasa  福永 津嵩

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Fukunaga Tsukasa  福永 津嵩

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Researcher Number 80791433
Other IDs
Affiliation (Current) 2025: 慶應義塾大学, 理工学部(矢上), 准教授
Affiliation (based on the past Project Information) *help 2022 – 2023: 早稲田大学, 高等研究所, 准教授(任期付)
2020 – 2022: 早稲田大学, 高等研究所, 講師(任期付)
2017 – 2020: 東京大学, 大学院情報理工学系研究科, 助教
Review Section/Research Field
Principal Investigator
Complex systems / Basic Section 62010:Life, health and medical informatics-related / Biological Sciences
Except Principal Investigator
Medium-sized Section 62:Applied informatics and related fields
Keywords
Principal Investigator
アルゴリズム / 遺伝子機能推定 / 高速化 / 系統プロファイル法 / 機械学習 / メタゲノム / 機能未知遺伝子 / 確率モデル / lncRNA / 深層学習 … More / RNA二次構造 / 進化 / ゲノム進化 / 比較ゲノム / 論理関係 / 多重検定補正 / ゲノム解析 / データベース … More
Except Principal Investigator
散在的リピート / BERT / 長鎖ノンコーディングRNA / 難溶性RNA / RNA結合タンパク質 / lncRNA / アルゴリズム / トランスポゾン / リピート要素 Less
  • Research Projects

    (6 results)
  • Research Products

    (23 results)
  • Co-Researchers

    (5 People)
  •  深層学習を用いたRNA二次構造情報解析の高速化Principal Investigator

    • Principal Investigator
      福永 津嵩
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Early-Career Scientists
    • Review Section
      Basic Section 62010:Life, health and medical informatics-related
    • Research Institution
      Waseda University
  •  大規模メタゲノムデータを用いた高精度機能未知遺伝子推定手法の開発Principal Investigator

    • Principal Investigator
      福永 津嵩
    • Project Period (FY)
      2022 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      Waseda University
  •  逆イジングモデル法に基づく機能未知な微生物遺伝子の機能推定Principal Investigator

    • Principal Investigator
      福永 津嵩
    • Project Period (FY)
      2020 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      Waseda University
  •  Elucidation of the function of long non-coding RNAs based on de novo discovery of repeat elements

    • Principal Investigator
      Hamada Michiaki
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 62:Applied informatics and related fields
    • Research Institution
      Waseda University
  •  Function estimation of functional-unknown genes using statistical logical relationship analysisPrincipal Investigator

    • Principal Investigator
      Fukunaga Tsukasa
    • Project Period (FY)
      2019 – 2022
    • Research Category
      Grant-in-Aid for Early-Career Scientists
    • Review Section
      Basic Section 62010:Life, health and medical informatics-related
    • Research Institution
      Waseda University
      The University of Tokyo
  •  lncRNA-mRNAの相互作用ネットワークに基づくlncRNAの機能推定Principal Investigator

    • Principal Investigator
      福永 津嵩
    • Project Period (FY)
      2017 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      The University of Tokyo

All 2024 2023 2022 2021 2020 2019 2018 2017

All Journal Article Presentation

  • [Journal Article] REPrise: De novo repeat detection using inexact seeding2024

    • Author(s)
      Atsushi Takeda, Daisuke Nonaka, Yuta Imazu, Tsukasa Fukunaga, Michiaki Hamada
    • Journal Title

      biorxiv

      Volume: -

    • DOI

      10.1101/2024.01.21.576581

    • Open Access
    • Data Source
      KAKENHI-PROJECT-23KJ2044, KAKENHI-PROJECT-20H00624
  • [Journal Article] DeepRaccess: high-speed RNA accessibility prediction using deep learning2023

    • Author(s)
      Hara Kaisei、Iwano Natsuki、Fukunaga Tsukasa、Hamada Michiaki
    • Journal Title

      Frontiers in Bioinformatics

      Volume: 3 Pages: 1275787-1275787

    • DOI

      10.3389/fbinf.2023.1275787

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-23K16997, KAKENHI-PUBLICLY-22H04891, KAKENHI-PROJECT-20H00624, KAKENHI-PROJECT-22H04925
  • [Journal Article] Mirage 2.0: fast and memory-efficient reconstruction of gene-content evolution considering heterogeneous evolutionary patterns among gene families2022

    • Author(s)
      Tsukasa Fukunaga、Wataru Iwasaki
    • Journal Title

      Bioinformatics

      Volume: 38 Issue: 16 Pages: 4039-4041

    • DOI

      10.1093/bioinformatics/btac433

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19K20395, KAKENHI-PLANNED-19H05688, KAKENHI-PUBLICLY-20H05582
  • [Journal Article] Inverse Potts model improves accuracy of phylogenetic profiling2022

    • Author(s)
      Fukunaga Tsukasa、Iwasaki Wataru
    • Journal Title

      Bioinformatics

      Volume: 38 Issue: 7 Pages: 1794-1800

    • DOI

      10.1093/bioinformatics/btac034

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K20395, KAKENHI-PLANNED-19H05688, KAKENHI-PUBLICLY-20H05582
  • [Journal Article] LinAliFold and CentroidLinAliFold: fast RNA consensus secondary structure prediction for aligned sequences using beam search methods2022

    • Author(s)
      Tsukasa Fukunaga、Michiaki Hamada
    • Journal Title

      Bioinformatics Advances

      Volume: 2 Issue: 1

    • DOI

      10.1093/bioadv/vbac078

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22H04925, KAKENHI-PUBLICLY-20H05582
  • [Journal Article] Mirage: estimation of ancestral gene-copy numbers by considering different evolutionary patterns among gene families2021

    • Author(s)
      Fukunaga Tsukasa、Iwasaki Wataru
    • Journal Title

      Bioinformatics Advances

      Volume: 1 Issue: 1

    • DOI

      10.1093/bioadv/vbab014

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-19H05688, KAKENHI-PROJECT-19K20395, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-20H05582
  • [Journal Article] Targeting the TR4 nuclear receptor-mediated lncTASR/AXL signaling with Tretinoin increases the Sunitnib sensitivity to better suppress the RCC progression2020

    • Author(s)
      Hangchuan Shi, Yin Sun, Miao He, Xiong Yang, Michiaki Hamada, Tsukasa Fukunaga, Xiaoping Zhang and Chawnshang Chang.
    • Journal Title

      Oncogene

      Volume: 39 Issue: 3 Pages: 530-545

    • DOI

      10.1038/s41388-019-0962-8

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PUBLICLY-17H05605, KAKENHI-PROJECT-16H05879
  • [Journal Article] Logicome Profiler: Exhaustive detection of statistically significant logic relationships from comparative omics data2020

    • Author(s)
      Fukunaga Tsukasa、Iwasaki Wataru
    • Journal Title

      PLOS ONE

      Volume: 15 Issue: 5 Pages: e0232106-e0232106

    • DOI

      10.1371/journal.pone.0232106

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K20395
  • [Journal Article] LncRRIsearch: a web server for lncRNA-RNA interaction prediction integrated with tissue-specific expression and subcellular localization data2019

    • Author(s)
      Tsukasa Fukunaga, Junichi Iwakiri, Yukiteru Ono and Michiaki Hamada
    • Journal Title

      Front. Genet.

      Volume: - Pages: 462-462

    • DOI

      10.3389/fgene.2019.00462

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K20032, KAKENHI-PROJECT-16K16143, KAKENHI-PUBLICLY-17H05605, KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-16H06279
  • [Journal Article] A Novel Method for Assessing the Statistical Significance of RNA-RNA Interactions Between Two Long RNAs2018

    • Author(s)
      Fukunaga Tsukasa、Hamada Michiaki
    • Journal Title

      Journal of Computational Biology

      Volume: 25 Issue: 9 Pages: 976-986

    • DOI

      10.1089/cmb.2017.0260

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-16H01318, KAKENHI-PUBLICLY-17H05605, KAKENHI-PROJECT-16H05879
  • [Presentation] 相同配列情報を活用した高速なRNA二次構造予測手法の開発.2024

    • Author(s)
      西村 友宏, 久保 顕登, 福永 津嵩, 浜田 道昭.
    • Organizer
      情報処理学会第77回バイオ情報学研究会
    • Data Source
      KAKENHI-PROJECT-23K16997
  • [Presentation] 比較ゲノム解析により明らかとなった, Synechocystis sp. PCC 6803におけるユニバーサルストレスタンパク質のステート遷移制御機能2023

    • Author(s)
      福永津嵩, 小川敬子, 岩崎渉, 園池公毅.
    • Organizer
      第65回植物生理学会年会
    • Data Source
      KAKENHI-PUBLICLY-22H04891
  • [Presentation] DeepRaccess: 深層学習を用いた高速なRNAアクセシビリティ予測2023

    • Author(s)
      原 快成、岩野 夏樹、福永 津嵩、浜田 道昭.
    • Organizer
      第76回バイオ情報学研究会
    • Data Source
      KAKENHI-PROJECT-23K16997
  • [Presentation] DeepRaccess: 深層学習を用いた高速なRNAアクセシビリティ予測2023

    • Author(s)
      原 快成、岩野 夏樹、福永 津嵩、浜田 道昭.
    • Organizer
      第76回バイオ情報学研究会
    • Data Source
      KAKENHI-PUBLICLY-22H04891
  • [Presentation] Mirage: A phylogenetic mixture model to reconstruct gene content evolutionary history using a realistic evolutionary rate model2020

    • Author(s)
      福永 津嵩、岩崎 渉
    • Organizer
      第9回生命医薬情報学連合大会
    • Data Source
      KAKENHI-PROJECT-19K20395
  • [Presentation] MotiMul: A significant discriminative sequence motif discovery algorithm with multiple testing correction.2020

    • Author(s)
      Koichi Mori, Haruka Ozaki and Tsukasa Fukunaga
    • Organizer
      IEEE BIBM 2020
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K20395
  • [Presentation] 統計的有意性を担保可能な系列パターンマイニングに基づく配列モチーフ検出ソフトウェアの開発2020

    • Author(s)
      Koichi Mori, Haruka Ozaki and Tsukasa Fukunaga
    • Organizer
      第9回生命医薬情報学連合大会
    • Data Source
      KAKENHI-PROJECT-19K20395
  • [Presentation] RNA相互作用解析のためのバイオインフォマティクスソフトウェア開発2019

    • Author(s)
      福永 津嵩
    • Organizer
      RNAフロンティアミーティング2019
    • Data Source
      KAKENHI-PUBLICLY-17H05605
  • [Presentation] Tarone法を用いた系列パターンマイニングの多重検定補正2019

    • Author(s)
      毛利公一、福永 津嵩
    • Organizer
      日本バイオインフォマティクス学会2019年年会
    • Data Source
      KAKENHI-PROJECT-19K20395
  • [Presentation] Tarone法を用いた頻出部分文字列マイニングの多重検定補正2019

    • Author(s)
      毛利公一、福永 津嵩
    • Organizer
      IBIS2019
    • Data Source
      KAKENHI-PROJECT-19K20395
  • [Presentation] ヒトlncRNA-RNAの網羅的相互作用予測及びデータベースの構築2017

    • Author(s)
      福永 津嵩、岩切 淳一、小野 幸輝、浜田 道昭
    • Organizer
      第五回NGS現場の会
    • Data Source
      KAKENHI-PUBLICLY-17H05605
  • [Presentation] lncRNA-mRNAの網羅的相互作用予測へ向けた高速なRNA-RNA相互作用予測ソフトウェアRIblastの開発2017

    • Author(s)
      福永津嵩、浜田道昭
    • Organizer
      第19回日本RNA学会年会
    • Data Source
      KAKENHI-PUBLICLY-17H05605
  • [Presentation] RIblast: An ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach.2017

    • Author(s)
      福永津嵩、浜田道昭
    • Organizer
      第6回生命医薬情報学連合大会
    • Data Source
      KAKENHI-PUBLICLY-17H05605
  • 1.  Hamada Michiaki (00596538)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 2.  足達 俊吾 (90783803)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 3.  小野口 真広 (30645297)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 4.  IWASAKI Wataru
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 5.  岩切 淳一
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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